RNA id: TU209105


Basic Information

Item Value
RNA id TU209105
length 458
RNA type TUCP
GC content 0.47
exon number 2
gene id LOC110496136
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74991655 ~ 75145608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCCAATCTACCTGTCCACTCTGCAAGGTGGAACTCAACAAGGGCTCCAAGGACCCTCCCAActacaacacctgcacagaatgCAAGAACACTGTCTGCAACCTCTGTGGATTTAACCCCATGCCACATGAAACAGTGAAGGAATGGCTCTGTCTGACCTGCCAGATGCAGAGAGCACTTGGAGCAGTGGAACCCCCAGGACCTCCCATGATGAAATCCCAACCGTTGCCCAGCATAGTCTCTACACCTGTTGCACTTCAAAAGGAGATTGTCACACCTGCTGCATCTCCAAAGCCGACTCCAGCTCCAGCTAAACCCCAGAAGGAAGAGATCCCAGTACCTGCGGCTGGCCAACAAGAGATCACTCCACCCACTGTACTTCAGGAGACACCAATTCCCGCTGGAACCCCAGCACCAAATGCAGACAAAAAGGAGGAGACCCCACCACTAGGATCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209125 lncRNA upstream 2309 75019103 ~ 75034943 (+) True G184332
TU208893 lncRNA upstream 156134 74878646 ~ 74881118 (+) True G184122
TU208844 lncRNA upstream 233438 74803595 ~ 74803814 (+) True G184075
TU208841 lncRNA upstream 244513 74792406 ~ 74792739 (+) True G184072
TU208829 lncRNA upstream 251584 74785432 ~ 74785668 (+) True G184060
TU209134 lncRNA downstream 15907 75056997 ~ 75057785 (+) True G184341
TU209151 lncRNA downstream 38842 75079932 ~ 75080163 (+) True G184358
TU209152 lncRNA downstream 40731 75081821 ~ 75082029 (+) True G184359
TU209153 lncRNA downstream 41317 75082407 ~ 75082650 (+) True G184360
TU209154 lncRNA downstream 42388 75083478 ~ 75083777 (+) True G184361
XM_036934200.1 mRNA upstream 48561 74971238 ~ 74988691 (+) True LOC118936821
XM_036955513.1 mRNA upstream 74262 74910467 ~ 74962990 (+) False LOC110496126
XM_036955514.1 mRNA upstream 74262 74910467 ~ 74962990 (+) False LOC110496126
XM_036955515.1 mRNA upstream 74262 74910467 ~ 74962990 (+) False LOC110496126
XM_036955516.1 mRNA upstream 74262 74910467 ~ 74962990 (+) True LOC110496126
XM_036955531.1 mRNA downstream 100912 75142002 ~ 75256839 (+) False LOC110501950
XM_036955521.1 mRNA downstream 106083 75147173 ~ 75256839 (+) False LOC110501950
XM_036955523.1 mRNA downstream 106083 75147173 ~ 75256839 (+) False LOC110501950
XM_036955525.1 mRNA downstream 106083 75147173 ~ 75256839 (+) False LOC110501950
XM_036955529.1 mRNA downstream 106083 75147173 ~ 75256839 (+) False LOC110501950
TU208835 other upstream 150752 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 323138 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 502226 74529649 ~ 74535026 (+) True G183361
TU206688 other upstream 1412734 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 1427015 73606892 ~ 73610237 (+) True G182139
TU209106 other downstream 45532 75086622 ~ 75087407 (+) False LOC110496136
TU210196 other downstream 1126567 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1126567 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1392727 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 1493288 76534378 ~ 76606975 (+) True G185549

Expression Profile