RNA id: TU209106



Basic Information


Item Value
RNA id TU209106
length 786
RNA type TUCP
GC content 0.37
exon number 1
gene id LOC110496136
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74991655 ~ 75145608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAAGGAATGGCTGTGTCTGAACTGCCAGACACAGAGGGCTCTCTCTGGACAACTGGGAGACATGGGAAAAATGGCCCAGTCCCAACCCATCAAGATCCAGGCCCAGCCCACACCACTCCCTGTAGTTCCAACCACCAAGACAGAGCCCCAGCCTCCAGCAGCAGTAAGCAGCAAGGCCCAGACTTTCTCTAAAACACAGCCTCCATCCCAGGCTGTGCCTCTCACCTCAGTGCCCACTCCGCCTACACCAATACCTGGCCTTGCACAAATGGAACCAAAGATGGAAGTCCCCAAGGCTGAAGCTCCCATGACTGTCGCAAAGGCTGAGGCTCCTGAGACGGAAGTCCGTAAGGCGGAGACAGAGGCACCAAAAATGGAGCCTTCTGTGGCAGAGTTTCCTAAGGCTTTGCTGCCTAAACCTGTACCACCTAAATCTGAACCACCCAAAACTGATGCTCCAGCAGTAGCTGCTTCAGTTGCCTCTGTCCTAGTGACTGAGGCCAtgactcctcctgctcctctatcCACCACAGTGGCTACTGCTGTTGCGGTCACTCCAGCCACTGTGGAGGAGAAGCCAGAGGCTGAAGCTCAACCAACAGAGCTACCTAAACTAGAAGAGGAGAAGGTTGAGAAGCAACCGAAACAACAGGAACCGCTTTATGTTGCTCCACAAACAGTCCAAACTGATACTATCAAGGAAGTGGCCACTCCATTGGTTGAAAAGGTGGATGATGTCCTTCCTGAACCTCAGCAGATACTCACTGAGAAGGAGACAGTGAAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209154 lncRNA upstream 2845 75083478 ~ 75083777 (+) True G184361
TU209153 lncRNA upstream 3972 75082407 ~ 75082650 (+) True G184360
TU209152 lncRNA upstream 4593 75081821 ~ 75082029 (+) True G184359
TU209151 lncRNA upstream 6459 75079932 ~ 75080163 (+) True G184358
TU209134 lncRNA upstream 28837 75056997 ~ 75057785 (+) True G184341
TU209158 lncRNA downstream 1495 75088902 ~ 75089146 (+) True G184365
TU209169 lncRNA downstream 33767 75121174 ~ 75121414 (+) True G184376
TU209177 lncRNA downstream 42127 75129534 ~ 75129742 (+) True G184384
TU209179 lncRNA downstream 43738 75131145 ~ 75131378 (+) True G184386
TU209180 lncRNA downstream 44509 75131916 ~ 75132123 (+) True G184387
XM_036934200.1 mRNA upstream 97931 74971238 ~ 74988691 (+) True LOC118936821
XM_036955513.1 mRNA upstream 123632 74910467 ~ 74962990 (+) False LOC110496126
XM_036955531.1 mRNA downstream 54595 75142002 ~ 75256839 (+) False LOC110501950
XM_036955521.1 mRNA downstream 59766 75147173 ~ 75256839 (+) False LOC110501950
XM_036955523.1 mRNA downstream 59766 75147173 ~ 75256839 (+) False LOC110501950
XM_036955525.1 mRNA downstream 59766 75147173 ~ 75256839 (+) False LOC110501950
XM_036955529.1 mRNA downstream 59766 75147173 ~ 75256839 (+) False LOC110501950
TU209105 other upstream 45532 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 200122 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 372508 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 551596 74529649 ~ 74535026 (+) True G183361
TU206688 other upstream 1462104 73622536 ~ 73624518 (+) True G182144
TU210196 other downstream 1080250 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1080250 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1346410 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 1446971 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 1743006 76830413 ~ 76832500 (+) True G185718

Expression Profile