RNA id: TU209085


Basic Information

Item Value
RNA id TU209085
length 2930
lncRNA type read_through
GC content 0.44
exon number 1
gene id LOC110496136
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74991655 ~ 75145608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcagtcagtcagtcagtcagtgagtgggGTTCAAATTgatgtatttgtttgtgtgtttttgtccttGGCTGCTTGAAAAAGTATGGAATGTTTGTTGTAAGATTCTATTTATGTTGTGTACAAAAAGTACAGTGCAATTATATGGTTGATAAGTAATTAACGAAACCTGACCATACCTGAACGCTCAAGTCCAGTAGGTGGCAGTAATGTACCATTACAGTTTGTTGCCAACAGCCATAAAACTCCAACTTGACCTTAACTGGATAGATGTACATGTACATTCAGATTTAGATAGATATATGTCAGAATATGAATCATATCAGAGACACAGTGTACAGAGAAATTGTATTTATGACCATAGATACATATATTACAGACGATATGAGGTGTCTCCTCATGTACAGTTTATTCTAAAGACTACATTCTGTACAGACAAGAGTATGGAAGGAGCACAGACAATCCAATCCCTTTAGCTCTGGTGTTATGCAGTTAAACTGGGTGTTATACAGTGGGAAAATAGGAAAATGCAGTTCAAATGGTGAATGTAGAACTCATAGCACAACTGAGACATTAGAGGAGAACTACTACATGGATATCCCTCCTCTTACAGGTGGGGAGAAGAGAACAGATAGAAGAGGATGCCAGGTCCCTTCCCTTCAAACTCATTTCAGTCTGATATATTGTGTTATGAGAGAGTCCATTCCATATAcagacagcagtgtgtaggaATGTTCCGTCCCCTCCCCTCATTATGTCCTGAATGTTACTCACTGAGGAAGATCCCATGATTTTACTGGACTCATCAGACTGGTTATGTTTTTGTGATGTCTTACGCACATGTGACTGGAGGCTTAAACAATCGTTTTGGTTTGAGAGCAAAACCGAGATTGCTGGCCACCTTGACCAACCTGCAATCTGACAGAGGGGTGTGTAGCCTCTCTCTGGTGAGTTGCTTTGCTCCCCTGTTTGGGCTGCTGGGCTGCTCACCTATTCTATGTTAAAGCAACAGTTAGACACACCTGTCCTCTGCGTGTGTGACATCACAGTCTggttctgtaaaaaacattttttttttaaagtttgttCAACAGAACACTCAACATCTTGCTGTAAACAGTACACTGTAAACAGTACACTGTAAATTGTACACTGTGCAGTTAGTGTCAGTGGATGTAATGCGACAACACAGTGAACCAGCCTTTGTCACTGCCTCTGATCAAAGCTCTAAGTCATTACCTATGTCCCAGTCATAACATGGCaggacacactgatacacactgaTATACAGTCCAGATCTATGGGCTCAGAACCATATGGCGCTACTGTTGTTAGTATATTATTATTTCCAGTGATCTATATAGTGGATCATAGTGAACAACTTCATCAAGTGACCCTACAGAGCTAGTACCCTCAACCATACTGTCAGTGTCTGAAGGCATATCACTGAGCAACTAGGGAGGACAGATGCAATTTCCTAATAAATTAAGTCCATATCAGAGCCTCGAAATTCAGACACTGAGTCAAGATGTCACAAATGTTCATAAGACAAATAAACGTGATTTTAAAGAGGGTTAGTtttacagaaaatgatgttgtCGTGCCAACCTTGTTTTGTATGCAAACCCATTGGTTGTGTTGAAGTCATTCTATGCAACATAGACCTTGTGTTTGAATGCATTTTCTTAACATGTAATATCAGTGAACATTGTGTCTGAAAATATGTATCTTATGAATAGAATTTTAATTTATTTTGGTTTATATATTATTGAAGAAAAGGATAAAAAAAATAGAGATTGTTTTACTACTTAACAGCTGTTATCATGTACATGAAGCTTGTGCACTTTAGTATTACATCGGTGATTGATTTCATTGTCCTGTGTAACGTGTCATGACATGCAAGTTGAAGTATCTGTTCCAGTTAGTGTCTCCATGTTGAGATGATGTTGAGTCATGTTATCTGTGCTGTAGGAAGAAGTTCAGACACCACTCTTTTTCATTTCCAAGGCaatagaaaaacaaaaaacaacatctACATTCACAGACAATTTAAGGTACATGTTGCTTCACAATGCACAAATCTAAGGAGACATCAATCTGTATGTTTGATACAACCACCAACACATGTATGTATAAATCAATGATGATGAGTCTGAGGACTGTCCAAGGACCCTTAATGGTCTCCTTAGATTTCCCTTAGCTAGATAGTTAATATACATTGTTCCTAAGTCCGTTGCTAGTAACCGTGAAACCATTCAAACGTGTATCTGTTGGGCGTGAATGTGGCATACTCATCTGATCTGTGTAAATACAAAGTGTTTTTATTTTCTAGAGAGATTGATGAATCATATTGTCTGAGGTTCGAGCATgtgagtgtaaaaaaaaaagaagacaaaaaactcaaacctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgcctgtctgtctgtctgtctctagtggTGTGTGTGAGGTACTTATGTGATCAGACTGTGTTGTCAACCCATGGGTGTCTGACTGTACAACCATGTCGCAGACGTCACCGAGCCAACCTGGATGTTGCATGTTTTGTTGATGGTCTGTCAATATTTTTGCTTCCAGATTATGTTTAAAAAGAGAGAATATGTATAGATTTATCGGAAATGGTATTCCGACTGTATAAAGATTCTGCTTGTAAAATTGTCTTGTTTTTCATTCAGTGTAAAAATGGAGAATCTAGCGTTCTGGTTTTGTGGTTGTACACAGGATGTGTTGAGATATTATTATGCAAATTGTGCTGTAAAAACCGTCTGTTTACCTAAAGTCTAAAGAATAAATATAAAAAGAGATTTATTCCACAACCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209180 lncRNA upstream 10556 75131916 ~ 75132123 (+) True G184387
TU209179 lncRNA upstream 11301 75131145 ~ 75131378 (+) True G184386
TU209177 lncRNA upstream 12937 75129534 ~ 75129742 (+) True G184384
TU209169 lncRNA upstream 21265 75121174 ~ 75121414 (+) True G184376
TU209158 lncRNA upstream 53533 75088902 ~ 75089146 (+) True G184365
TU209214 lncRNA downstream 49121 75194729 ~ 75195520 (+) True G184421
TU209228 lncRNA downstream 72719 75218327 ~ 75218871 (+) True G184435
TU209503 lncRNA downstream 183808 75329416 ~ 75329742 (+) True G184689
TU209505 lncRNA downstream 184301 75329909 ~ 75331362 (+) True G184690
TU209506 lncRNA downstream 185818 75331426 ~ 75331660 (+) True G184691
XM_036934200.1 mRNA upstream 153988 74971238 ~ 74988691 (+) True LOC118936821
XM_036955513.1 mRNA upstream 179689 74910467 ~ 74962990 (+) False LOC110496126
XM_036955521.1 mRNA downstream 1565 75147173 ~ 75256839 (+) False LOC110501950
XM_036955523.1 mRNA downstream 1565 75147173 ~ 75256839 (+) False LOC110501950
XM_036955525.1 mRNA downstream 1565 75147173 ~ 75256839 (+) False LOC110501950
XM_036955529.1 mRNA downstream 1565 75147173 ~ 75256839 (+) False LOC110501950
XM_036955534.1 mRNA downstream 1565 75147173 ~ 75256839 (+) False LOC110501950
TU209106 other upstream 55272 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 101589 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 256179 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 428565 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 607653 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 1022049 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1022049 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1288209 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 1388770 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 1684805 76830413 ~ 76832500 (+) True G185718

Expression Profile