RNA id: XM_036955531.1


Basic Information

Item Value
RNA id XM_036955531.1
length 5412
RNA type mRNA
GC content 0.47
exon number 41
gene id LOC110501950
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75142002 ~ 75256839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACAAGGTGGACATGAGGAAGAGGGTGGTCAGCTGGCACAAGCTGCTGGTCAGCTCcacacacaaccagtcatgaGAGATCGACTTGAGAGGACACCGAGGGGTCAACCAGAGAATAAAGGAATGGGTGGATCAGATGCAGATAGAGCTGGTGACCCTGGCAGACATGGCCAGCGCCGGGAAGAACCTCACACagATATTCCTGGACAACCAGAACCTGTACACAGTAGAGTCAAATGATGCTGAGGAACTAGTGGCTAGGGCAGCCAGGAATATAGAACAGCTGCTACTGAAGAGGGCTGCAGCTCTGGAGACTCTGGCCACATTTGCTGAGAATTTCCAGATGGAACACCAGTGGAAGGATGAGTATGCGGATGGTGACATTGTTTACTACAATGCAAAGGACAATttggAGGTGAATGAGACAGAGGGTCGGAAGAACCGGATCAGGCCAGCCTTTAAGGAAGATATGTTGTTTAAACGCCTCACCTCTCACAACCACACTGCTGTACACATCCCTACTGACATCTACGATGGCTccaccATCGTGCTGAATGAGTTGAACTGGACAGAGGCACTGGAGGGTGTGTTTAAGAAGAACAGAGAGGATGACCCTACTCTGCTCTGGCAGGTGTTTGGTAGTGCTACTGGACTGGCCCGATACTACCcagCCTCTCCATGGATGGATGCTCGGAAGACCCCCAGTAAGATCGACCTGTACGACGTACGCAGGAGACCCTGGTACATTCAGGGAGCTGCCTCACCCAAGGACATGCTGATCCTAGTGGACGCGAGTGGCAGTGTGTCTGGTCTGACTCTGAAGCTGATCAGGACCTCTGTCGGTGAGATGCTGGAGACTCTGTCTGATGATGACTATGTCAACGTGGTCTATTTCAACACCAGGGTGAATAACACGGCGTGCTTTGACCACCTGGTCCAGGCCAATGTGAGGAATAAGAAGATCCTGAAGGATGCTGTTCAGAACATCTCTGCTAAAGGCATCACCAACTACACCAAGGGATTTGAGTTTGCCTTCGAACAGCTCTATGCAACTAACATCACTAGAGCCAACTGTAACAAGATCATCATGCTGttcactgatggaggagaggagagagcgtcGGCCATACTGCAGAAATACAACGCTGACAAGAAGGTGCGTATCTTCACCTTCTCAGTGGGTCAACACAACTATGATAAAGGTCCAGTCCAGTGGATGGCCTGCGCTAATAAAGGATACTTCTATGAGATTCCCTCTATTGGAGCCATACGCATCAACACTCAGGAGTACCTGGATGTCCTGGGCAGACCCATGGTTCTAGCTGACCAGCTGGCCAAGCAGGTCCAGTGGACTAATGTCTACCTTGACGCTCTGgagCTAGGTCTGGTCATCACAGGAACCCTACCTGTCTTCAACAAGACCAAGTATAAAGATGAATCGGGTTTAGAGATTCAGAACCAGTTGATCCTAGGGGTGATGGGGATTGACGTGTCACTAGATGACATCAAGAAGCTCACACCGCGCTACActATTGGACCTAATGGCTATTATTTTGCCATCGACCCCAATGGATATGTACTGCTACACCCCAACCTCCAACCTAAGAATCCTAAATTCCAGGAACCTGTCACTCTGGACTTCCTCGATGCTGAACTGGAGAACGACATCAAAgtccagatcagGAGAATGATGATAGATGGGAACCCAGGTGAAGAGACCATAGAGACTCTAGTTAAAACTCAGGATGAGAGATACATCGACAGAGGAGTAAGGACGTACACCTGGGCTCAGGTCAATGGAACAGACTACAGCTTGGCCCtggtcctacctacctacagtgaACACTACATACAGGCCAAACTAGGAGACACCATCAGACAGACCATGGCTCCATGGGGGCAGAAGGCCATGGACACTCTGCAGctggagatgtttgatgagctGGGATACACCTTCATCGCCCCAAGGGAGTACTGCAAAGGCTTGAAAGACAACGACAACAACACCCAGTTCCTCCTGGACTTCAACCAGTTCATAGACAGGAACACACTGGAAGAGCCATGTAATGTGACTCTGGTCAGTAGGCTGCTGTTGGACGCTGGGTTGACTGCTGATCTGGTCAAACTGTGGAAGGAGCAGTCATTGGGTGGGATTCTGGCCAGGTTTGTAGCCACTGATGGAGGGATCACCAGAGTCTATCCCAGAAGtgctgGAGAGGAGTGGACAGAGAATGCTGAGACCTATGACTCAAGTTTCTACAAGAGGACTCTGGATAACAACATCTATATTTTCACCGCTCCATACTTCAACAagaGCAGGGAGTCAGGCTATGAGTCAGgtattctggtgagcaaggctGTAGACCTCAACATAGATGGAGTCAACCTCAAACCAGCTGTGGTGGGGGTGAAACTGAACGTCTCCGCCTGGATGAACAACTTCATGAACGCCACCATCAAAGCCAACTGCAAGGATGAAATCTGTGGCTGTCTGAAGAATAATAAGcacgttgactgtgtcatcctggatgatgGCGGCTTCCTGCTGATGTCCAATCAGGATGAGTATATCACTCAGATTGGTCAGTTCTTTGGGGAGGTAGACCCAGTCGTGATGATCAGTCTGGTCAACACGTCTCTGTACTCCTTCAACAAGACCTACGACTACCAGTCAGTCTGCGATCCTGAGAGAGACAGCAAGGCTGCTGCAGGGCCACGATCTGTCTATgtgCCCACTATAGCAGACATGCTGAGTATAGGTTGGTGGGCCTCCACTGCTACCTGGTCGATAATGCAGCAAGTCTTCTACGGTCTCATATTTCCCAGCTTCGTAGAGGCAGtggacTCAGATGATGACATGTCAGCTAACATGTTTAAGGAGAGTTGTATCACAGAGCAGACTCAGTACTTCTTCGACAACAAAGAGAGATCCTACTCGGGAGTCCTTGACTGTGGAAActgctccaggatgtATCGAGCTGAGAAGCTGCCCCACACTAACCTGGTGTTTCTGATCACTGATGCCAAGGCCACCTGTCTGTCTTGTGACCCCAGACCACTAAGACAAGCTGAGCAACCCTcccaGGGTCCAGACCCCTGTGAGCTGGCTCAGAACCCCAGATACAGGAAAGGACCTGACGTGTGTTTCGACAACAACATAGACGACGAGCCCCTGTGTCCAATCAGCGGTGTCTCTGGTCTGAGTCCCGTCCCCCTCCTCCTGTTGCTGCAGGTGTTGATGCTGGGCCCAGGGAGGATGATTCTGACTGTGGGGGCGGGACCTCTCTAAGCCCCTCCCTCTGGCCCTTGTTGGGGCTCCAACTACTGCTGCTGTGGCTCCTCACTGGCTCCCGAGACTCATGacccctacacaaacacacaaatgcacacacacacacatacacactcacatctCACTTAGACAGTGTTTTACATTGGACTGTTTTCTGACGCTCCATCCTCTGAACGTAGTCACTGATGTGTTAACTCACTGCCAGTATGGAAGAGGAGTCACTCTCCTGTTCTCCGATCGTTCTCCAATGCCAAAGGGTGCTCTCTCTCATCGCTCACTTCTCTTCTCTACCATGTTTCAATTGCCTgagatattctattctattctattatattctatggTGCAACAGTAAGAGCTAACCAAACCCTTTAATTCTGTAGTATCTATGTATTGGTTTGAGTCTGAGGGAGGTTGAGTGGCTGTCCTTTCATGCCAACATATTATTTTTCACTGACAGCAAATGATTTGTGTATGCCTAGTTGTTTGTATTATTGTTATATTTATTATATGTAGAAAAAGATCATGATGAAGACAACAAACGCTGTAACTGAAATGGACAGCAAAGTTCTCAATAATCCAAATGTTCCAGGTCAACCAGGAGCGAGTAAATAGATGCAGTAGACTAGAGTAGGGTTCACTCAACAGAGAGCTGGACAACACTAACTATGACACCAAATAAAGCTCATTAGAGTAATGGGGATAGTTGGCCCATGAAAGAGACTCTGATAACATGGTCAAATCATACTTTAATATCGTTATGGCCATGGTACCAACCTGAGCCAAATACTTTCTAAATACTTTTGGTGTGCTTCATTTAGGTTCACTTGCTGAGTGAGCATGGTtgtacttttgggactattccattggttccattgcaccgGGAAAGTGAAATCTAGTGCAACTCAAGTGATACACTATCTATTTGACCCAGGTCTTTATagatacatatacagtatagctTCATTTGATGCATCAGATTCCTAGTGCCTATGTAGCGTCAACATCCCATTCATATATCCAGAGTTAATCTTTGATGGGGAGTCATTGGAATGATGTCCCAATGTGTCCCAGTTGCACGCCGTACAGTATGCTATGTGTAGTAGTAGAGCAGGAGCAGTAGCTCAGAGATGTGTTTCTTATTTTACATAACTAGCTGGTATCTATCTAGCCTGGGTGTCAGTCTCATTCACCTTCAGACTGCCAGACAGACTTGAACCCACCTCTGTAGAACAATGTGCTCCTGAAGTTAGTTTCCTCTGGATCCCCAGACTCAGGATTTCAGCAAAGTGAAAGACAGAAAAGCTTTCCAGAAGACAACAGGAGTTTGTATCACATGCCCTGGTGAGCAGACAACTGGAGAATGATATCAGCATATACAGTATAAAGACTGTTTCTTTTCCGTCTTCTTCTACTGCTTGTTTCTTCTTTGTGTTGCTCTCTAAGTGCTGTCAACGAGACGCTGAAAGCGCGGTGTCAGAATGCTGCAATGTGACGGGATGAGTCTGTTCGATGTTGGACGCTCCTCAAACCATGGATATGtcactgtttggccatgatggagaggacCATGGTACAGGCACTGTTACCACAGACCTGAACCACAGACAGTTTCAAGTCTTACCCCACTCTTATCCCAACCTTACCAAAAGTTAAGTTCATTGTAAACTACACATTACAAAAAAGCAgcactgtaaccctaacccaaaatGAAGAACTAACAGCTCATGTTATGTCGTTTTTACATCGGGGCCTATCGCTGCCAGTGTTGTCCTTTCTGCCATGGCCATCGTGTGACTAAATGGTTTGGCGTTCAGGATCATGCCTGTTTATCGGAGTCACGTGTTGACGTGTGTATAACACCAAGAACATTATGTAGCCCTGGTACAGGCAGGTCCCTGGGGAAATCCTTGATTGTGCTTTAATACATGACTTACTCTTTTGTGTAACTTGACTAGCCTGATTCaattttgtatacatttgtaCAATAATGATATTTactgtaaaaaaagaaaagaaaaaaaagaaactgaaAAAAGGAGCTATAATGTTTATATAACATGGTTGTGATTCTTGTGCAAATATGATGTATTCACAATAAACGTATAGTATTGTTATGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209180 lncRNA upstream 9879 75131916 ~ 75132123 (+) True G184387
TU209179 lncRNA upstream 10624 75131145 ~ 75131378 (+) True G184386
TU209177 lncRNA upstream 12260 75129534 ~ 75129742 (+) True G184384
TU209169 lncRNA upstream 20588 75121174 ~ 75121414 (+) True G184376
TU209158 lncRNA upstream 52856 75088902 ~ 75089146 (+) True G184365
TU209503 lncRNA downstream 72577 75329416 ~ 75329742 (+) True G184689
TU209505 lncRNA downstream 73070 75329909 ~ 75331362 (+) True G184690
TU209506 lncRNA downstream 74587 75331426 ~ 75331660 (+) True G184691
TU209514 lncRNA downstream 90811 75347650 ~ 75347911 (+) True G184699
TU209537 lncRNA downstream 97059 75353898 ~ 75354438 (+) True G184722
XM_036934200.1 mRNA upstream 153311 74971238 ~ 74988691 (+) True LOC118936821
XM_036955513.1 mRNA upstream 179012 74910467 ~ 74962990 (+) False LOC110496126
XM_021571914.2 mRNA downstream 22031 75278870 ~ 75305291 (+) True LOC110496163
XR_005037883.1 mRNA downstream 296410 75553249 ~ 75553889 (+) False LOC118942025
NM_001145890.1 mRNA downstream 308640 75565479 ~ 75567166 (+) True lep
XM_021571949.2 mRNA downstream 366406 75623245 ~ 75634823 (+) True LOC110496192
XM_021571992.2 mRNA downstream 399340 75656179 ~ 75661643 (+) False gcsha
TU209106 other upstream 54595 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 100912 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 255502 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 427888 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 606976 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 910818 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 910818 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1176978 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 1277539 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 1573574 76830413 ~ 76832500 (+) True G185718

Expression Profile