RNA id: XM_021571914.2


Basic Information

Item Value
RNA id XM_021571914.2
length 2906
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110496163
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75278870 ~ 75305291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCTACTAAGAGGCATCTGTGCTGTAGCTGAGTGAACAACCCCAGTACCTCCGTCCCGCTGTCTGGACCTTGTCAACGAAAGACAACACCGTTACTATTATTGGGATATCAATAATCGTTTATAACGTGAACAGCTTTTGCAGCAACTATGTGGATTTACAACATTATTTTTACTCTCTTAATCGTCCGTTATTCAGagtgcaGGAGGAATGCATTACAGGACTACAAGAGGAGTGATGGCGTGAGATTGGTCCAACTGCCAGACTCTGCCCTCCATACCAAAAGCAGGAAGTTGAGCATTGTGAAGTGTGCCCGTGGTTGCAGCCGCAACAAGATTCTGCTCTTCACCTGCAGaGCGTTCTTGTATGATCAGAAAAACAGGAAATGCCAGTGGCTGTCGTTTGACAGGAACTCACCAGGAGTCCAAAGCCAACATGACTTCAACTACCAACTCTACCAGAAGAAAGCCTATGTGCAGGAGTGCATAGTGGGGACAGGAGTGAACTACAGAGGGAGAAGGTCTGTAACGGCCAGTGGAATCAGGTGCCAAGCCTGGGCCTCTCCTTTCCCTCATGAACACAATTTCCTACCAAGGAAGAACAGGAAGAAGGAGCTGACAAACAACTACTGTCGTAACCCTGACAACGCTATTTCAGGACCATGGTGCTTCACTACAGACCCCAACGTTAGACACCAGGTCTGTGGAGTACCTGAGTGCTTACAAGTGGAGTGTGTGAGCTGTAATGGGGAAAGTTACAGAGGTCCCATGGATCACACAGAGACGGGACGGGAGTGTCAACGCTGGGACCTAGAGGAACCACACAAACACCTCTTCCACCCcaagagGTATCCTGATAAAGGCCTAGATGACAACTATTGTAGGAACCCAGATGGACGTCAACGACCGTGGTGTTTCACCCTGGATGCACACACATCCTGGGAGTACTGCAACATCACAGCCTgccCCTCAGACAGTGTGGGAGAGGTAGATGTGACTACCGGGTGTTTCCTGGGTCGAGGTGAGGGCTACAGAGggacagtagcagtaacaccCAGTGGGGTGACCTGTCAACGCTGGGACTCACAGTACCCCCACAACCACACTTACATACCCCAGGACTATCGCTGCAAagacCTGAGGGAGAACTACTGCAGGAACCCTGACGGCCTTGACCTCCCATGGTGCTTCACTTCAGACCCTAACGTTCGCAAGGCATTCTGCACCAACATCCTCCGCTGTGGCACACAGAATACTGAACCCCATGACTGCTATGAGGGCAACGGAGAGAGCTACAGAGGAGAGGTGTCGAGGACCAGGTCAGGTCTTCCCTGTTCCCTCTGGAGAGACCACAGTTGGGACAGAGATGCAGCGGTGGTGGGACAGGAGGCGAGTTTCTGTAGgaacccagacagagacacacatggCCCCTGGTGTTATACTAACAGCACTGCTATACCCTGGGACTACTGCAGCATCAAACcatGTGTACCATCAAAGAACACCATTCCACAGAGAGTGGAGGTGTCCAATGTGTCATGTTTCATCCATAAGACGACCAGGATAGTAGGAGGAGCTCCAGTCGCCATCACAGACGGAAGCTGGATGGTCAGCATACAgaaacgGTCCAGTCACTGGTGTGGAGGTTCTCTCATACGAGAGGAGTGGGTCCTCACTGACAGACAATGCTTCTCCTCATGTGTTCCAGACCTGAGTGAGTATCGTGTGTGGTTAGGTGTATCAGACCTTCGTGGCTTGGCTCCTAACAGCTCCTTCAGACAGGAAGTCTCCATCTCCCATGTGATCTGTGGTCCTGAGGGCTCCAACCTGGCCCTCATACGGCTGGCCCAGCCTGCCCTCCCTGCAGACAGTGTCCACACCATTCAGCTGCCGGTGGCTGGGTGCTCTATTGTTGATGGCTCGATGTGTAGCATGCATGGATGGGGTGAAACcaaagGTACGGGTCATGAAGGTGTACTGAAGGTGGTCCATCTGCCCATGATCAGTAATGAGAGGTGTAGTGAACAACACAGAGGGAACCTCCACATCACAGACACCAAGATTTGCGCTGGGGGGAAGAAGGACGAGGGCGTCTGTGAGAGGGACTATGGCGGCCCCTTGGTGTgccaggaaggagagagcagggtcATAGTGGGGGTCAGTGTCCATGGCAGAGGCTGTGCCCGTGCCAATCGGCCTGGCATCTTCATCAACGTCCCCTTCTACACCCAGTGGATCCACAAGGTGTTCCGACACTACCCCGAACCTCAGATCAACTAGGCACTACCCTCAGATCAACTAGGCACGACCCTCAGATCAACTAGGCACGACCCTCAGATCAACTTGGCACTACCCTCAGATCATCTAAATATCAAATACAGATAAACCTTTATCCCATCATCAATTAGAGACTCACTCGACCCCCCTTGATATAGATACACCTGTGGCTCAGTCACGTAAGGACCAACTGAGTCCCTGTGCATTTGAAAGAGGGAAAGCTCCAGCCATACAGAAAGATATCAAACGCAACTCCAAACTTGATTCTGGAATTCAGACTCATGGGCTTCTATATGTCTTTGGAGTGGACCTGTGAAGTGGAATGTAATTGTGTTGATCAGACTGCGGGATCGATCCTTTAGATAATATAAATATGTAGTGTTACAGACATGCTACTAAGGACAACAGAGGTGTGGATATGTGGTTGGCTAAACACCATGTGCTGAAGCTGGTAAGGTTTGGATGTTCAGGACTCATATTGTACACAATCAGTAAGAATCTGTAGACAATGTGGtaataggggagagtggggtaaattgagacaccccttgtttctaggaaaccatataCAAAATTAATAATGTGACCACAtttttaggaagaggtcatcatttcatggagtcagAAGG

Function

GO: NA

KEGG:

id description
K05460 HGF; hepatocyte growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209228 lncRNA upstream 59999 75218327 ~ 75218871 (+) True G184435
TU209214 lncRNA upstream 83350 75194729 ~ 75195520 (+) True G184421
TU209085 lncRNA upstream 133262 75142679 ~ 75145608 (+) True LOC110496136
TU209180 lncRNA upstream 146747 75131916 ~ 75132123 (+) True G184387
TU209179 lncRNA upstream 147492 75131145 ~ 75131378 (+) True G184386
TU209503 lncRNA downstream 24125 75329416 ~ 75329742 (+) True G184689
TU209505 lncRNA downstream 24618 75329909 ~ 75331362 (+) True G184690
TU209506 lncRNA downstream 26135 75331426 ~ 75331660 (+) True G184691
TU209514 lncRNA downstream 42359 75347650 ~ 75347911 (+) True G184699
TU209537 lncRNA downstream 48607 75353898 ~ 75354438 (+) True G184722
XM_036955531.1 mRNA upstream 22031 75142002 ~ 75256839 (+) False LOC110501950
XM_036955521.1 mRNA upstream 22031 75147173 ~ 75256839 (+) False LOC110501950
XM_036955523.1 mRNA upstream 22031 75147173 ~ 75256839 (+) False LOC110501950
XM_036955525.1 mRNA upstream 22031 75147173 ~ 75256839 (+) False LOC110501950
XM_036955529.1 mRNA upstream 22031 75147173 ~ 75256839 (+) False LOC110501950
XR_005037883.1 mRNA downstream 247958 75553249 ~ 75553889 (+) False LOC118942025
NM_001145890.1 mRNA downstream 260188 75565479 ~ 75567166 (+) True lep
XM_021571949.2 mRNA downstream 317954 75623245 ~ 75634823 (+) True LOC110496192
XM_021571992.2 mRNA downstream 350888 75656179 ~ 75661643 (+) False gcsha
XM_021572014.2 mRNA downstream 407766 75713057 ~ 75718243 (+) True gtf3c6
TU209106 other upstream 191463 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 237780 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 392370 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 564756 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 743844 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 862366 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 862366 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1128526 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 1229087 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 1525122 76830413 ~ 76832500 (+) True G185718

Expression Profile