RNA id: XM_021571925.2


Basic Information

Item Value
RNA id XM_021571925.2
length 4469
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC110496174
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75356571 ~ 75361242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctctctctctatttttccctCACTGAGACTAAGGAAAGGACAAAAATACTCTCTCTCCTTCGACTgctttttcctctccctctctgcttctctttctCTAAAGCGTAGCTCCGGCAGCACTgcgctccctctcctcctcctcctctctctctaaccagcacccccatctctccacctcccccccaccccctcaggAAGAATACTGCTAACTGTGCTGCACGCGGCAGGCTGCAGCTGCTATAGCCACGGCCAGGCAAACCATCGCAGGGAGAGGaccagaagagaagagagaaaaagagaggacagTGGGATGACTGCGTCAGGAGTCCTttagctttttctctctctctttctccatccatcAGAGCGGGGCGAATCAGGCACCAGCTAGCCTTCGGCAAAGTCACCGAGACGGAGGGCTCTCAGCCgacatacacacagaaacacagaaacacacacacactcacgaggACCTGCAGAGACcggtggatttaaaaaaaaatttattGTCATTTTTTTCCTTTCTGCTCGGTGTGTCTGGCTTTTACTGCTTGATGGAGCAGTGTGATTCGTCAACAGAGGGGCCGTGTGTCTGCGGCtgcaggcagggagagggggagaggaggagggctgggGGACGCCAGTCACCTGCTTAGCTTAACCCACACGGCCTGTCTTTTCCCACCGAGCCTCTAGTCTCTACACGCGGCTCTGCTCCACTCTCACCACCGGCTAACAGGAGACATTTTGTTCCATTAGTTAACACAGGGACATTACCACCACTTTCCAGATTGAAGGAGAAGAACTGAATATAAATACACTTTTCACATTTCTGTTTTTCCATGGAAAGGGAAATATACATGACTCTGGTTCCTGATGGTTTTTTGTGATATTCAGAAAGGACGAAATAAGGGACCGTTTAAGAACTAATGAGCGTCACCCAGTCTCGTCGATGGCGTGGCGAATCCTGTCCTTGCTCCAGCCAGGGTAGGAGGGTGGTGCGTCCTCCTCTAGTGTCCGTCTCGCCCCAACATGCTGAACAATGAGCCCTCCGCAACATGAGTACTGTGGGCCGGGTTTCTCTGCAGCCCACCTGGAACGCAGCCCTGCTCGCCCTGCTAGCCCTCACCATGGTGCCAGCTCTCAGTGTGTGCCAGCCTGCCGGCCTGGGTCCTCCCCCCAACCCCCAGAACTGTCCGGTGGTGTGCTCCTGCACCAACCAGATCGGTAAGGTTGTGTGTACACGCCGTGGCCTGGTCAGGGTTCCCCCCGGGATCCCCACCAACACCAGATACCTCAACCTGATGGAGAACAGCATCGAGACCATCCAGGCTGACACCTTCAGACACCTACACCATCTGGAGGTGCTGCAGCTGGGCAGGAACGCCATCAGGCAGATTGAGGTGGGGGCCTTCAACGGCCTCACCAGCCTCAACACCCTGGAGCTGTTTGACAACAGACTGACGGGGATCCCCAGCGGGGCTTTTGAGTACCTGTCCAAGCTGAGGGAGCTGTGGCTGAGGAACAACCCCATCGAAAGCATCCCCTCCTATGCCTTCAACAGGGTGCCCTCTCTGATGAGGCTGGACCTAGGGGAGCTCAGGAGGCTAGAGTACATTTCTGACGGGGCCTTTGAGGGCCTGCAGAACCTCAAGTACCTGAACCTAGGGATGTGTAACCTCAGGGAGATGCCTGTCCTGTCTCCCCTGACTGGCCTGGAGGAGCTGGAGATGTCTGAGAACACTTTCCCTGAGATGAAGCCTGGCTCTTTCCGCGGCCTGCGCTCGCTGCAGAAACTCTGGATTATGAACTCTGGGATCACCGTGATCGAGAGGAACGCCTTCGATGACATCACAGCGCTGGTGGAGCTGAATCTAGCCCATAATAACCTGTCATCTCTCCCCCACGACCTCTTTGCCCCGCTGCAGTACCTAGTGGAGCTTCATCTCCACCACAACCCCTGGAGGTGTGACTGTGACGTGGTCTGGCTGTCCTGGTGGCTCAGGGAGTACATCCCCACTAACTCCACCTGCTGCGGCCGCTGCCACTCCCCTGCCCACATGAGAGGACGATACCTGGTGGAGGTGGACCAGACCACATTCCAGTGCTCTGCTCCCTTCATCCTGGATGCTCCAAGGGACCTCAACATCTCTGCAGAGAGAGTGGCTGAGCTCAAGTGTCTTACGGCCGCCATGTCATCGGTCCGATGGCTGCTTCCTAACGGGACCGTTCTGACCCACGGCTCGTCTCATCCTCGGATCTCTGTCCTCAATGATGGAACGCTCAACTTCTCCAACGTTTTGCCATCGGACAAGGGTGTCTATACTTGCATGGTGACTAACATGGCAGGTAACTCCAACGCCTCAGCCTACCTGAATGTCAGCAATGCCGAGCTCAACACCTCCAACCTGTCCTATTTCACTACAGTGACTGTGGAGGTGCTGGAGCCCACCGTAGAAGAGACCCCCAAACCCAAACCCACAGTCCCAGCCTCGCCCTCAGTGTTCCAGCCCGTCTTCATCTCCACGCCCACCATGCTGCTCCAGAGCACCCAGACCCCCCGCCAGGTGTCTCTCCCCACAGCCCGTGGCCCCACCCACCCCTCCGCCAGCCTGGACGAGGTCGTGAAGACAACCAAGATCATCATTGGCTGCTTCGTTGCCGTGACGCTCCTTGCCGCTGCCATGTTGATCGCCTTCTACAAGCTGCGTAAGCGGCACCAGCAGCGGAGCACGGTGGCAGTGGCGCGGACCATCGAGATCATCCAAATGGATGAGGAGGTTCCCGAGGTTCCACCGGCCAGGTCAGGTTCTAGCGAGTCTGAGGAGATGGGGCTGGCTCTGCCCACCATCTTAAAAGCAAGATACATCTCATCATCCTCATCGTCCtcccacagagacagagacagagacaaagacagagacagagacagggacagagctgCCTATGGGGCTCACTGGACCCATAACAACCTGGGAAACTCCCTGCACCGTTCCTCCAGCCGCCAGCATCATCAGCAGCACCACCACAGCCTCATCAGCACCATCGCAGAGCCCTACGTCATTAAGACAACTCACACCAAGGAGAAGGTCCAGGAGACCCAGATCTAAGGGACTCATGCTGGCCTTACTGTGGATCTAACTGTGTGGATCTAACTGTGTGGATCTAACTGTGGATCTAACTGGGTGGATCTAACTGGGTGGATTTCTATATGGATCTgactctactccctcctctcttcctctcctcactgctcacCAGTCCATGCAATAGAATGCACAAAGAAGACGGTAACTTTCTTTTGTACAGAGTGCAAAATGGAGACAGTTTTATCTATCTTGTACATGCTTATACATAAATatagaaatgtaaaaaatatacatCTATATAACTTAATCTAATGGTGGTGTTGGGATTATGTATCAAAGAAGAAAGTAaaatttaaactattttctaatAACTTGTAAGTTCTATTTAAAAGCGAGAGATGTTGAGGTCTCGATGATGGTATGTTTGATTGATTGAGGGAGGAGCTGTCTTGAGGGAAACTGTTATTTTTGTCATTTAGACCACTTAGGATGTAGTAAAAGCCCTTTATACCCACAGCAGTTTATAAAACAACAAGCCCTAACATCAGATCAGGCTTCGCAGGTTCATCTCATAAAAGCGGCAGTTTGTACTGTGCCAAACGTTACAAATACAATAAAGGACTCCGGAAGATTATGAAAACCAACAGCCACATCCAAGCAAAAtctagacagaaagacagagagtaattTGTCGAGGGAGAGACGTAGAGAGAAGAGCATAGATTTTGCTGTTCAGTAGCTATCAGCCAAATGGTTTTAGACTGCAGTGAATTTCTGCAGCTAAGGTTTAACCCTTTGTTTTCCGGAGCAAAGCTACACATCTATCTAAAAACAGCTCTTTATGTTACTGAATCTAAACCCGTTTAGTACGGTTCTATTTGATTTATCCCAGGTCCCCTTGGCTAAGATGAAGGACAGGCTATTATGAACAGAGATTTGGTGTGGTTTCTTCATGCAGATTTAGGTTGCATAAGgtattgttgttttttatttttgtctTGGGTTGTGACATGCTTCTTAATGGCATGTGTAGTGCTTAGGGTTAACGTAGTGCTGCATTACAGTggttctctgtctgctctctgtagGGGCTCGTTCTAATGGTAATCCCTCACAGTTACAGACGTGGTGCAGAGAGACTGGGGTTTGCTGACCAATCTGCTTTTGGAAGAAAAAAAGGAGCTGGGCTGAAATTAAATGAATGTCTGGACATTGGGCTTGTTTCTCTATGGACTTCATTGAAACAATGAAATTGTTTTTTCTTTTCCTTATTTTGGGTATTATTTCGAGCAACACTATTTTTATGGGGTGTCTATAAGGAGGCTACAAAAAATAAAACCTTTGGTTTGTATTTCTCTACTTGGA

Function

GO: NA

KEGG:

id description
K16351 LRRC4, NGL2; netrin-G2 ligand

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209546 lncRNA downstream 238 75355887 ~ 75356333 (-) True G184731
TU209545 lncRNA downstream 2122 75354009 ~ 75354449 (-) True G184730
TU209532 lncRNA downstream 9617 75346715 ~ 75346954 (-) True G184717
TU209530 lncRNA downstream 12212 75344152 ~ 75344359 (-) True G184715
TU209528 lncRNA downstream 12938 75343416 ~ 75343633 (-) True G184713
TU209547 lncRNA upstream 8827 75370069 ~ 75370289 (-) True G184732
TU209558 lncRNA upstream 17918 75379160 ~ 75379382 (-) True G184743
TU209572 lncRNA upstream 25048 75386290 ~ 75386515 (-) True G184757
TU209584 lncRNA upstream 34354 75395596 ~ 75395876 (-) True G184769
TU209586 lncRNA upstream 35186 75396428 ~ 75396897 (-) True G184771
XM_021571790.2 mRNA downstream 762145 74533285 ~ 74594426 (-) False LOC110496093
XR_005034539.1 mRNA downstream 848466 74501414 ~ 74508105 (-) True LOC118937295
XM_021571746.2 mRNA downstream 883255 74452532 ~ 74473316 (-) True LOC110496063
XM_036955509.1 mRNA downstream 883269 74452532 ~ 74473302 (-) False LOC110496063
XM_021571768.2 mRNA downstream 883271 74452532 ~ 74473300 (-) False LOC110496063
XR_005037884.1 mRNA upstream 217608 75578850 ~ 75582017 (-) True LOC110501959
XR_005037885.1 mRNA upstream 223315 75584557 ~ 75585136 (-) True LOC118936395
XM_021571935.2 mRNA upstream 234124 75595366 ~ 75605880 (-) False LOC110496186
XM_036955575.1 mRNA upstream 234124 75595366 ~ 75607735 (-) False LOC110496186
XM_021571963.2 mRNA upstream 283099 75644341 ~ 75656164 (-) False LOC110496199
TU208774 other downstream 623934 74730872 ~ 74732637 (-) True G184006
TU208238 other downstream 1245780 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 1363026 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 1680148 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 2010724 73344950 ~ 73345847 (-) True G182708
TU210008 other upstream 244985 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 516117 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 623917 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 731928 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 912282 76273524 ~ 76293392 (-) False G186197

Expression Profile