RNA id: XM_021572014.2



Basic Information


Item Value
RNA id XM_021572014.2
length 889
RNA type mRNA
GC content 0.43
exon number 6
gene id gtf3c6
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75713057 ~ 75718243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATAATGTTGAACCTGTGCAATAAATGATAGGAGTACAGACACAAAAAACATTGGCTTTTTTTAAGATTAAAAAAGGCAACCTTAAAAAATATTTCGATTGTTCTTTGCATGATAACTAGTATAACATATCGATATTTTTGCACATTTTCCATAATTTTCGCCGTAATTATTAATTAAACTGGAAAATACTTATATTCTGAAGGAGTCCCAAACTCCGTGACCAGGAAGTACTTAGTTATTATTGCCTGTTTCACAGCGGTGTGGGTCTTTGTTTATTATTCCCGGCAGTTTCTTATCAAGCATCGTGAATATGGAAGACGAATGGGAGGAGGAGgAGCAGTTGGTTGTGGTTGAGCTCTCTGGTATAATTAACTCAGATTTTTTGACCAAGTGTCAGGGAACCTGCAAGATACTGGACATTGACAGTGAGCAGCCAATGATGCAGGTGGGAAGATACGTGTTTGCGGGAGAGTATGACGATGCCTTGGGCACCTGTGTGCTCTTCGAGGAGGGACAGTCGAGTGggGCAGACCCTGAAGCCAGTCCAGAGCTGAGCTATAAGTGCCACACTGTTAAGAGACTGATGATGCAGAGAACCTTTCTTGCTGAGAAAAAGGAAGGAGACAACAGctcagGAGACTTTCAGTTTCAGCCACTGAGTGACGGAATGTCCCCAGCCAGACTCgactcactctctcacttcatCCAGAACCCAAAGAGGATCTCCAAGCCAGCAGGGGAAGGGGGAGCACACATGATGGGGCAGAAAACTGGGTAGAGGGGTCAGGCAGGACACTGTCAGCAACTCCATTAATTAGGTTTTACCTCTGAtttgtaattatatttttgtactGTGTATGTTGTTGAAATAAATATGACGCTTTCTAGA

Function


GO: NA

KEGG:

id description
K15203 GTF3C6; general transcription factor 3C polypeptide 6

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU209784 lncRNA upstream 51415 75656200 ~ 75661642 (+) True gcsha
TU209791 lncRNA upstream 54001 75657844 ~ 75659056 (+) True G184959
TU209767 lncRNA upstream 103330 75609516 ~ 75609727 (+) True G184938
TU209765 lncRNA upstream 106407 75606170 ~ 75606650 (+) True G184936
TU209754 lncRNA upstream 117009 75592282 ~ 75596048 (+) False G184927
TU210067 lncRNA downstream 55523 75773766 ~ 75781152 (+) True G185186
TU210070 lncRNA downstream 79005 75797248 ~ 75797581 (+) True otogl
TU210076 lncRNA downstream 121534 75839777 ~ 75840544 (+) True ptprq
TU210089 lncRNA downstream 124383 75842626 ~ 75843199 (+) False G185204
TU210088 lncRNA downstream 124603 75842846 ~ 75843401 (+) True G185204
XM_021571992.2 mRNA upstream 51414 75656179 ~ 75661643 (+) False gcsha
XM_021571949.2 mRNA upstream 78234 75623245 ~ 75634823 (+) True LOC110496192
NM_001145890.1 mRNA upstream 145891 75565479 ~ 75567166 (+) True lep
XR_005037883.1 mRNA upstream 159168 75553249 ~ 75553889 (+) False LOC118942025
XM_021571914.2 mRNA upstream 407766 75278870 ~ 75305291 (+) True LOC110496163
XM_021572025.2 mRNA downstream 1560 75719803 ~ 75722571 (+) True LOC110496239
XM_036934208.1 mRNA downstream 7818 75726061 ~ 75730218 (+) True LOC110496246
XM_036934224.1 mRNA downstream 12575 75730818 ~ 75797742 (+) False otogl
XR_005037899.1 mRNA downstream 18571 75736814 ~ 75737495 (+) True LOC118942028
XM_036955622.1 mRNA downstream 80263 75798506 ~ 75842546 (+) False ptprq
TU209106 other upstream 625650 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 671967 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 826557 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 998943 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 1178031 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 449414 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 449414 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 715574 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 816135 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 1112170 76830413 ~ 76832500 (+) True G185718

Expression Profile


XM_021572014.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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XM_021572014.2 Expression in each Bioproject

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XM_021572014.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.