RNA id: XM_021572025.2


Basic Information

Item Value
RNA id XM_021572025.2
length 1742
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110496239
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75719803 ~ 75722571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAATCAAAAGGCCGAAGCTGTCCAGAAGTGGAGTAATGGACGAGCGGTATGAAACAAGCTAATCTTAGTACAGGAAACGACTTTACTACGGCGATGGGTGTGTATCCGGAGTAGATGACGTTGACGGTCAAAATCGAAAGACTTCAGAAAGACCGagtatggCGCTGCGGCCGTTGGTCATGTGTTTTGCGCTGTGCGTGGTGCACGCCTCCAGTAAACCCACCATCGACAAGAAGGACCGTGTCATTCATGACGACCTGCTTAGCAACCGCAACCATGACGACGCAGATAACTTTGATTATGACCATGAAGCGTTTCTTGGACAGGATGAGGCCAAGACCTTCGATCAGCTCACACCtgaagagagcaaagagagattgggtatGTTGGTAGAGCGTATAGATGAGGACAAGAATGGGTATGTGTCAGTAGAGGAGATGAAGAAGTGGATCAAACACAGTCAGAAGAGGTGGATCTATGATGATGTGGACCGCCAGTGGAAAGGTCATGACCTTAACGGAGATGGACTGGTGTCCTGGGAGGAGTACAAGAATGCCACATACGGATACATACTGGATGATCCAGACCCAGAAGATGGCTTCAGCTACAGACAGATGATGTCACGTGACGAGAGGAGATTCAAAATGGCCGACTTGGACGCTGACCTGAAGGCCAATAAAGAGGAGTTTACAGCCTTCCTCCATCCTGAGGAGTACGACCATATGAAGGATATAGTTGTACTGGAGACCATGGAGGACATTGATAAAAACGGAGACGGCTTCATAGATCTGGAGGAGTACATAGGTGACATGTATAACCAGGAGGGTGATCCTTCAGAGCCAGAGTGGGTGAAGACAGAACGAGAACAGTTTACTGAGTTCAGAGATAAAAACAAAGATGGCCGCATGgacaaggaggagaccagagacTGGATCCTCCCTTCAGACTATGACCATGCAGAGGCAGAAGCCAAACACCTGGTCTACGAGTCAGATAacgacaaggACGGCCATCTGACCAAGGCAGAGATCGTAGAGAAGTATGACCTCTTCGTTGGCAGCCAGGCTACTGACTTTGGAGAAGCCTTGGCAAGACATGATGAATTCTAACTTTCCACTTCCCAcacagggttgggctcaattcagtCATGGAGTTGAAATCCCAATTAAAAACACTATATGGAGAATAGGGTGACGTTTGAGACGGAGCGTTTCACACTAGTGTACTAAGTAGTATACGAGTTTGGACATCAAGTTTGGACATCAAGACACACCTCCTGGTTTGGCTCCACCACCATCCTCTCGTCCAATCCAGACAATGGAAAGGATATACAGTATTTCCTTTGTCTTCGTTTGCAGATCAActttgtttttgtaagaagtgacAGAATACAGATGTTAGTGTTTGTTTTGGTAGCCTTGTTTGAACAATGTGTCAGGTGTGCAATGAAGGGCAGAACTGTGCATGTTGTGGTCATTTCAGGTTTAAATTCAGGAAGTGAGTCAAATTCAATAGAAAAAGtgaattgatcccaaccctggtgtATGTTCTGCACTGGACTATGAAGGGGAGATGTACAGTGCCCTCTACtaatattggcacccttggtGAATATGAGCAAACGGGCtgtgaaaaaaaaatgtatttgtttatccTCTTGGTCTTTCTTTCAAAATATTCACATAAATCTAACCTTTAATTAAAGTAAAAtaatttgaaaaaaatatatcataaaacaaa

Function

GO:

id name namespace
GO:0042470 melanosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0033018 sarcoplasmic reticulum lumen cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23901 CALU; calumenin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209784 lncRNA upstream 58161 75656200 ~ 75661642 (+) True gcsha
TU209791 lncRNA upstream 60747 75657844 ~ 75659056 (+) True G184959
TU209767 lncRNA upstream 110076 75609516 ~ 75609727 (+) True G184938
TU209765 lncRNA upstream 113153 75606170 ~ 75606650 (+) True G184936
TU209748 lncRNA upstream 123755 75592517 ~ 75596048 (+) False G184927
TU210067 lncRNA downstream 51195 75773766 ~ 75781152 (+) True G185186
TU210070 lncRNA downstream 74677 75797248 ~ 75797581 (+) True otogl
TU210076 lncRNA downstream 117206 75839777 ~ 75840544 (+) True ptprq
TU210089 lncRNA downstream 120055 75842626 ~ 75843199 (+) False G185204
TU210088 lncRNA downstream 120275 75842846 ~ 75843401 (+) True G185204
XM_021572014.2 mRNA upstream 1560 75713057 ~ 75718243 (+) True gtf3c6
XM_021571992.2 mRNA upstream 58160 75656179 ~ 75661643 (+) False gcsha
XM_021571949.2 mRNA upstream 84980 75623245 ~ 75634823 (+) True LOC110496192
NM_001145890.1 mRNA upstream 152637 75565479 ~ 75567166 (+) True lep
XR_005037883.1 mRNA upstream 165914 75553249 ~ 75553889 (+) False LOC118942025
XM_036934208.1 mRNA downstream 3490 75726061 ~ 75730218 (+) True LOC110496246
XM_036934224.1 mRNA downstream 8247 75730818 ~ 75797742 (+) False otogl
XR_005037899.1 mRNA downstream 14243 75736814 ~ 75737495 (+) True LOC118942028
XM_036955622.1 mRNA downstream 75935 75798506 ~ 75842546 (+) False ptprq
XM_036955623.1 mRNA downstream 75935 75798506 ~ 75842546 (+) False ptprq
TU209106 other upstream 632396 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 678713 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 833303 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 1005689 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 1184777 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 445086 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 445086 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 711246 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 811807 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 1107842 76830413 ~ 76832500 (+) True G185718

Expression Profile