RNA id: TU210070


Basic Information

Item Value
RNA id TU210070
length 334
lncRNA type sense_over
GC content 0.38
exon number 1
gene id otogl
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75730818 ~ 75797742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAGTGGTCAGATGTGCAGGGCTGTAACCTGTTCCTGCTGTACTATGATAACACTAGTCCTATCTGTACTGCTGTAGCCTGCTCCTCCTCGTGTGTAACACTAGCTAGTCCTCTCAGACTTTATCACGTTTAGATCAGTTGGTCTGAGCTGACAAGACCACTGCTGCTTTAGTATGGATCTAGTGCTCTCTTGATGACTGACATGTTTTATATGCCAATCAAATTTATCTTacaaaatagttattttttttacaagTGTAAAGCTTTTAtccaaaaatatttgtatttaactCAATCAATTATTTAGTAAGGTGATAATCCACCTGAGCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210067 lncRNA upstream 16096 75773766 ~ 75781152 (+) True G185186
TU209784 lncRNA upstream 135606 75656200 ~ 75661642 (+) True gcsha
TU209791 lncRNA upstream 138192 75657844 ~ 75659056 (+) True G184959
TU209767 lncRNA upstream 187521 75609516 ~ 75609727 (+) True G184938
TU209765 lncRNA upstream 190598 75606170 ~ 75606650 (+) True G184936
TU210076 lncRNA downstream 42196 75839777 ~ 75840544 (+) True ptprq
TU210089 lncRNA downstream 45045 75842626 ~ 75843199 (+) False G185204
TU210088 lncRNA downstream 45265 75842846 ~ 75843401 (+) True G185204
TU210090 lncRNA downstream 46180 75843761 ~ 75845575 (+) False G185205
TU210091 lncRNA downstream 46180 75843761 ~ 75844067 (+) True G185205
XR_005037899.1 mRNA upstream 59753 75736814 ~ 75737495 (+) True LOC118942028
XM_036934208.1 mRNA upstream 67030 75726061 ~ 75730218 (+) True LOC110496246
XM_021572025.2 mRNA upstream 74677 75719803 ~ 75722571 (+) True LOC110496239
XM_021572014.2 mRNA upstream 79005 75713057 ~ 75718243 (+) True gtf3c6
XM_021571992.2 mRNA upstream 135605 75656179 ~ 75661643 (+) False gcsha
XM_036955622.1 mRNA downstream 925 75798506 ~ 75842546 (+) False ptprq
XM_036955623.1 mRNA downstream 925 75798506 ~ 75842546 (+) False ptprq
XM_036955624.1 mRNA downstream 925 75798506 ~ 75842546 (+) False ptprq
XM_036955629.1 mRNA downstream 925 75798506 ~ 75842546 (+) False ptprq
XM_036955641.1 mRNA downstream 31799 75829380 ~ 75831472 (+) True LOC118942030
TU209106 other upstream 709841 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 756158 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 910748 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 1083134 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 1262222 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 370076 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 370076 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 636236 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 736797 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 1032832 76830413 ~ 76832500 (+) True G185718

Expression Profile