RNA id: XM_036955629.1


Basic Information

Item Value
RNA id XM_036955629.1
length 10124
RNA type mRNA
GC content 0.54
exon number 59
gene id ptprq
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75798506 ~ 75842546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACTACTCTGGTGTAGTTCAGCTGTGATACACTCCTCTTATACAGAGCTCTGACAACCTCAGACCTTACTGGAACCTCTGGTCGTGTAGTTTCTTCGCTCTTTGGTACATAGATGGGATATACAAACATCCATGAGTTTCTGATTCCAAAGCAACATTGATATTGGGTGTATGTTGTGGTACCATCTATAGATGATTGTGAATGCCATTCCTCTTGTGTGCTGATGAGATTACCAGGCTTCCCCATGGATGGAACCGTGCATATGTGGCTGCTGGCAGGGTTCATCCAGGTGGTCAGTCTCTTGTGTGTGCAGTGGTCAGATCCTGCGGTCATGGTTGTTGAGGTTGTGTTTGGCCACTTCCCCACCAGTCAGGATCCAGACTGGTACACCGTCTCCTACCAGATTGCACACAACCTCACGGTGTGGCTGGATCCGATTGGCCGCTCTGAGTGTTCTCCTGACTGCAGGCTGTTTCTGCAATTGGCTAAGGAGCCAGGAGGAAGTGACATCACGCTGAACGCTATAAAAAACAATACCACACTGAAGACTAAGACCTTTCATATCGctcctgtccccctctcccgTCTCCGTGTCGAGGTGACCACCACCAGCACTCTCCTGACCTGCAacctacagaacagacagagcTTCACTGCTCTCAGTCTACACAACATGCAcatcgaacacacacacactgaatacacacacactgaacagacacactctgaccacacacacacctcttcgtACGTAGTGAGAGGTCTGCAGCCTGGAGCACACTACAGCATCACAGCAGAGTTGACCACACCTCTCACACACCTCAACATCAGCCTCACCCAGAGACTACACACCACCATCGAGacagCCCAGTGTCCTATTGGTTGGCTGGCGAGTGGAAGGAGCTGCCACAGTGTGAGTAGGCGGAGCCTGTCGTGGGGCGATGCCCAGCAAACCTGTATAGGCATGGCTTCAGGAGGACACCTGGTGGATGTTAAAACAGAGagagacctcctcctcctctcctctcacctgacTACACACAACAACCTACTACTGCTCTGGACCGCTCTCAACGACagactgGATGAGGGGCTGCCCCGCTGGTCTGATGGCTCCTCCTACAACCTGACGAGTGCTATGACATCATCATCACTGCCAGCCAATCAGACAGACTGTTTTGCTCTACAGAGGAACACTACTGGACGAGGCTACTTCCTGACTTCGTTCTTTTGCCACATTCCTTTACCTTATATCTGTCACTGGGAAAtccctctcctccctcctttattCAACTTTCACCTGgtggaggtaacagagagagatgcagagctTCACTGGAGTGACCTCACATTCGTAAACTCCTCTCACCCTGCCCCCCAGCTCTATGTCCAATAccaagaagaggaggaaaaggaggaaaaacatggggaagagaaggagaggaggactgcAGGTCGAGTCCCAGTGTCTCTATTCTCCAGAGGGCTGAAAGTGCCAGGCCTGTACCCAGGCAAGGTCTACTCTCTGTCCCTCAGAGCCTCCCACCTTACTGGGGCCGCATGGAGCCTGGGGAGCACGCAGACTTGTCACACACGGCCCCTTCCCCCTCGAAACATCACCATTAGCAATGTGACAGCCAGTCAGATCACAGTaagctggacagccccagactccCAGCATGCTGTGCGGTGGAACTTTCTGGTTCGCTGGGAGGGTGTATCCTCAGGCCTGGAGACGAGAATGGTTGTGGCTAGTAGCGCCAGGTCCGCTGTGATTGCAGGACTGGAGGGGTTCAGGAAGTACAAGGTCAGAGTTGACTCCGTCACAGAACACGGTGTGGAGAGCTGTGGAGGGGAGGAACTGACCCTATACACTGcgGTGAGCCCCCcaggtggtgtggttgtgtctaGCAGAGGGGAGAATCTGACAGCGTGCTGGTCCGCCCCGTCAGGTGAAAGCCCTGATGGGTACTATGTTAGGCTACGCCCCGTCAGCCAGGCCCGCCCCATGGAACTGTGGGTAAATGAGTCCAGGTGTGTGTTCCTGGCAATATTCAGTCCAGGGCAGAACTACGAGGTGGGTGTGGCTtcagtgagaggagagaacatgagCCAAGAGATCAACACCACATACAGAACAGagCCTGGGCCCGTGCAGGCAGCCGTCCCTCTCTCGGTAGGAAGCAGTTTTGTGGTTCTGTATGTCCAGAGACCAGTActgggtgtgtgtgatggagtgagggtgtgtgtgtgtaagggagtgtgtgagggtgtgtgtgtgtgtaagggtgtgTGCGATTGGTGGCCATTCCCCCCAGGTAAGCACACAGTAACAATTGGCAGCCTGACTCCAGGGGAGGAGTACCATTTCAGTGTCTACAGCACCAGCCGTCACAGGACCGGACCAGcataccaaacacacacactcaggacaAgCCTGGCATCTCCCAGTACTGTGAGAGAGGGCTCAGTAACAGAGTCGTCAGTAGAGATGCTGTGGGATCCAGCCTCTGGACACGGACACAACTATGAAGTCATCTGTCTCAACTGTCACCACACACTCATGGTCCAGAAGGTGTGTGTTCCGAGGGCAGTGTTCTCTGGGTTGCTACCAGGCAGGCTGTACCACTTCTCTCTGAGGACGGAGAAAGAGTCCTTCACAGACAGCCCCCCTGTCACACTCAGCATCACTacagctccCAGTCCAGTGATGGTATCAGTCCTCAGTAGGACCACATCGTCTGTGACAGTTGGCTGGACCCAGGCCAGGGACGTTGTCAAAGGCTTCATCCTGTCAATCATAAACCAAACATCCAATCAGCAGCTGAACCTCTCAGTCCAGGAGCCATGgTCTTACAGGTTTGAGGACCTTTCCCCAGGAAGCTATTACACAGTATATGTTATCAGCAgcaatggagagaggaggagtacaCCGGCTTCTGTAGACTTCAACACCATCCCAGGAGCCCCACGGGAAGTGCTGCTGGTCGAAGAGGATGTGACCTCATCAGTGTTTGTGAGCTGGGGAGCCCCAGCAGGGGGCGTGGAGGGGTACAAGCTGCTGTTGTGTCTGTCTGGGGACAAGTCATCATGTCGTGAGATGGGGGTTCATAGCAACAGTCTCCAGGTAGGAGGTTTGACCCCAGGATCAGATTATGACATCACCATCCTGAGCCTGCTGGTATCAGACTTCAGCCAGCCTGTCACTACACAGTTCTCCACACGTCCGGCCGGTGTgtgttccctctctctgctctatgTTAACTCTTCCTGTGCCGTGGTGAGGTGGGACGCTGCCATTGGCCAGTTTGACTTCCACAGGGTAACTGTTGGAAATGGCTCGCAAGCACATACGATAGAGGTCTCCAAGGAGAGGCAGGTTGCTACAGTAACTGGGTTGAGGGATGGCTGTATGTACAACATGAGCGTGGAGCGCATTAGACGAGGAGAGGCAGGGACAGCTGCCTCCCTGACTGTTACCACAGTGCCGGGCCGTGTGCGTGGTGTAAATGTGGTTAGTGTGTCTGCTCAGAACTTCTCTCTGCGTTGGGAGCAGTCAGAGGGGTGTGTGGACCAGTACCTCGTCAGCCTGCTGCCCAACCAAGGAACTGTCTCTGTCTACCGCACAGTCGACAGACtcatacagGCTGACGTATCCAGTCTGAGTCCTCGAACAGTGTTTACGGTCATGGTGACCGCCGCCTCCTCCTCCAACCTCAGCCCACCGGTCAGCCGTATAATCAACACCAACAAGACTGCCCCAACATCCCCTCCCACCAATCTTGAGGGGGAGAGGGTGGGCTCCAATGGGATCCTTCTGTCTTGGACCATGCCCTCTGACTCCCGCGTCGACGGTTATGTCATCAGGTACAAAGAGGTGTGTCCATATCCAGACCCCACCTTCAAAGAGGTGACCAAACACCTGGACATTCCTGAGACCCTTCTCAATCTCTTCTTACCAGGGTCTACCTATAACATCAAGgttgCAGCAGAAAACTCTGCTGGTATTGGACCCTATAGCAAGTCTCTGTACATCAAAACTGCTGAGGCTCCCCCAGGCCTGGTGACTAACCTGACAGCGTTTGCTGAGAACCACACGTTTGTAGTGGTCACTTGGCTCCTGCCACTCCGCATCAACGGTCTGATCACCAAGTTTGCGGTCAAAGCCAAACACGCTCGTACTGGTCAGACCGTCCGCATACTGGAGCTGGATGCTGAGGACATCATGACCGGAGCGCTACCACACTGCAACgatgcaGCAGAAATTCTGTCTCGTGGGACCCCCAGTCCGTCAGAGGTGACAGCTCTGACAGCGTCCTCTCCTCCCGTCACCCTGTCAGCCGTCCCACCCGCCGCCACCTGGGCCGTACCAATATCCGTAGGGGTGGACCAGCTGCGACCTTACACAGCATACGTCTTCGAAGTGTCTGCTTTCACCTCCGACGGAGAGGGACAGGTAGCCTCCACCATGGTCCGCATGCCTGAGTcagCCCCAGAGGACCCCCCCCACAACCTGTTGGTATGGAACGTGACATCTAAGTCGGTCTCTGTCTCCTGGGATCCCCCAACCATCGTTACCGGACGTTTCAGCTACGTTATCTATCTCTACGGCcccacagggtttatcTATGAGAACAGCACATGGGACCTGAGGTTTGTGTATTCTGGTCTGACACCCTACACACGCTACAGAGTGGCGGTGCGGGCCAAGTCTGCTGGCCTGCTGGGGCCTGAGGCCTTTACTGCTGTACTGACACCTGCTGAGGctcccAGTGCAGTGCAGGCTCTGCAGGCAGTAGCAGTAGActctgtgtctgtgcgtgtgagtTGGAGAAGTCCTGCCCAGCCCAACGGTCTGATCACACAGTACAGACTCCTGGTTCTTTCTGATAACACACTGCTGCAGGACATCACCCTCACTGGAACACAGGAACTAAATTACACTGATCTCCTTGGTGATGGAACGTTTGCTGCTGTTATCCCTGACCACTCTCTCCGGCgagtGTATGTGAGGGACAAGGTCATAGACATGCAGGCTAAGGAGCTGTCTTACCTAGTCTCTGGTCTCAGTCCCTTCACTGACTACACCTTCACTGTTACCGCGGCTACTACTATTGGAGAGGGACCTGCAACACGCGTCACTGAGAAGACTCACGAACAGGTTCCTAGCTCAGTGGTGGGAGTGTCCTATCAGAATGTTAGCTCCACCTCTATCCTGGTCAGCTGGACTCTGCCCCTCAACCCCAATGGACGAATCACACACTACACTCTCTACGGACTCAACCTACACAGCAACCGGGCCCTGCAGAGAATTACACACAACACCAGCATActgctcacagGACTGGAGAAGTTTACAGGTTATAAACTGCGAGTGGCTGCATCTACTGCTGCAGGAGAGAGCTCTCTGTCTGACCTAGACGATATTTTCGCTGTCACACCCGAGGATgaaCCTGACACCCCGCCTGTAGGGTTAACAGTGGTAGACActtctccctccaccaccaccctctCTTGGTCGCCCCCGGAGAGAGCCAATGGGGTGATCCAACAGTATGAGGTTCTGTACGAGAACCAATCGTATGTGGCAGTGTTGAACAGCTCTGTCCCCAGAGTGACTCTGACAGGGCTAAGGCCGTTTTCATACTATAATGTCTCTGTCAGAGCATACACACGCATCGGACATGGGAACCACACCTCAGACACACTCACTATGCTGTCTGGGGAGGACGTCCCGGGTAGTCCTTCCTACGGCCTGTCCTACGTGTCTGTCAGTTCCAATGAGGTGAACGTGACATGGGAGCACCCCCTGGTGCCCAACGGAGTTATCACACACTACAGCCTTGAGCTGCGAAACTCCTCCCACTTCCTCAACCTGACCACTCCCATCAACCACGCCCAGATCACACACCTGAGGAAGTTTGCGCAATACACTCTGGTGGTGAAGGCACACACACGTATTGGCTCCGGAAACCACAGCAGTGACCCTCTCAACATTACCACTCTGGAGGACGTGCCCAGTGATCCGGTCCACAACCTCAGTGCTCAGATCTTCAGTTCTACGGCCATCATAGTAAGCTGGGACCCCCCTATGGAACCCAACGGACGCCCATTCTACCTGCTCACCCTGCAGGAGGCTGGACTCCCCCTTACCACTGAACCCCTGAACCCCCCTAAACCTAACAGCAACCCCCCCGGATCCCCCGCTGTCAACAATACCATCACCAAGATAACCAATGACAACGTCTTCCTGTTTACCAAACTCAGGAAGTACTATCCATACGTCTTCACTGTTACCCCGGCAACCAGTGCCGGCCCCGCCCACAACCACACCAGCCTGCTGCACGTAAGGACCGATGATGATAtCCCCAGTTCAGCTCCAGTGCTGGTGTCCAGTAGGAACCTGTCGTCCTCCTCAGTGTCTGTGGTGTGGCAGCGCCCCCTGGAGACCAACGGAGAGATAACTGACTATTCCCTCACCCTGTTCGGCCCTGGAGgctccaacaccacacacacccccaaCACCACCCTCACACTCACACTGCTGCTGCCCTACACAGCCTACAACCTCTCCATCACCGCAGCCACCCGCAAGGGCTCCGGACCCCcgctactactgatgctgcacACAGACGAAGCAGGTCCAATGTCTCCTCCCCGGAACCTGTCTCTGTATAACCACACAGCCTTCTCTGTGTGGCTGACCTGGGAACCCTCTCTGGAACCCAACGGTGTGGTCACACACTACGGCTTCAGGATCCTGGagaacaacacaaacacactcacttaccagaaCTCTACAGGTCCGTGGACAGAAGGACAGCTGAGTGGGATCCGGCCTCACAGCTCCTATGAGATCAGTGTGTTTAGCTACACCAGAGTGGGTCATGGAGACCAGTACAGCACTCCTGTGTACTTCACAACCAATGAATCAGTGTCAGAGGTGGTGGGTAACCTGTCCTGCTCTGGTCTGGGCTGGGACTCTGTGTTTCTACACTGGGAGCCTCCAGCCAACCCCAATGGACTCATCCTGTACTACCAGGTGGACACACGCTCACAGGCATACATACACCAGGCTTACACAAACCATTACACGGTCAGCGGGCTGGCGCCGGACACAGGATTCACACTCACCGTGGCGGCTGTCAACTCTGCTGGCCCAGGAGACAAGATCAACTGTACTGCCTACACACACCCCgagtcagTTCCTGGTGTCCCTCGCTTCCTGAGTGTGTCAGAGGCCACAGCCACCAGTGTAACGCTCCAATGggctcctcccctctctgctccGGGCATGCTCACTGAGTACCGCATCACCGTGCAGCTGCTGTCACCCGACTGCCAGTCTGACACACCCCTAGCTGAGGCCACACCCCTGCCAGAGCCGACCGCTGCCCTGGCTCCAGGCTGCGTCCATCAGGATGTGTTGGTGTCAGTGAATGGTTCTGATGGTGGTGAGGGCAACAGGAGCATCACTCTACAGTCTCTGGCCAAGTACCGCCTCTACCGCTTCAGAATCACAGCCCTTACGAATGCTGGGCCAGGAGAACACACACCctggaaatacacacacacactggctgggAacCCTGATGCCCCTCCCAGTGACCTGTCAGTGACCATGTCCTCCAACAGCCTCCGTATCCAATGGCAACTCCCAGATGTGATCACCGGCCCCACCTCCTACCTCATAGACGTCCTCTCTCTGGATAGCAAGGGGTTAAACCAGTCTGTGGTACGCAGTCCAGAGGAGCTGAGGATTGTAGTTGTGTCAAACCTGACTGCGTTCACTCGCTACTCTGTGACCGTGACCGCCTTCACTGGACCACTGGAGAACGCACGGCGGGACGGACAGGCCACTGAGCCCACTGTCATCAGAACAATGGAGGAAGAGCCCAGGGATCCTCCTAAGAACGTGACCCTGCAGGTGATTCCGGAGGAAGTGACCCGTGTGTTTGTGACCTTTGCCCCCCCTGAGGAACCCAATGGGAACATAAGTTCCTACACAGTGCTTGTCTACCGCCAGGGCCAGCTAGAGATGACCATTAACCACCTCAATGTGGTCAAAAATAAGAACCGCACTCTGACCGCAGTCATCGACGGGCTGAAGGGAGGCTACAACTATAGTATACGGattgcAGCAGTAAACGGAGCAGGTTTAAGCCCCCCCAGCTCAGAGGTTCGGATCACTACTGGAATCATAGctcctGCCAAGCCCACCCAGAGACCCCAGGCTGTGCTGGACCAAGGAGGAGTTGCCATGGTAACCTCCAGGAGCATCATTGTTCGCATGCCAGCCTGTTTCTACAGCGATGACAACGGACCAATCAGTAGCATCCAAATCATCGTGGCAGAATCTGGGGtgatGGACAGCAGGAACCTAACCAACTGGAAGATCGCATTCCTCTCTCGTCCCGCCCCCTACCTGACTGACAATGGCTTCCCCAACCCACTCTGTGTGAGGGACGGCGAaagcagtgacacacacacacaaaccagcaGACACAACAACTCACAGATTAGACACAGAATTGTGAGGGACAGGGTGCTGGACCGTAGAGACCACCAGGAAGACCACTATGTTATTGGAGAGGAGGGCAACTGTCTGACGGAGGAGTACAGTAACACACTCTGTAACGGACCCCTCAAACCAAACACTGTCTACGTATTTAAGTTCCGAGCCACCAACATCCGAGGCCAGTACACAGACTCTGACTACTCTGAGCATATCAGAACCGCAGTGGATGGGTTGTTGACCAGAGATGAACAGATCATTCTGGgagttctcctctccttcttcctggcTGTGctactcatcatcatcatctatgcCTCTGTCAGGATCCGTCAGCGTCAGAAGGAGGGAGGGACCTATTCTCCCCGGGAGGCGGAGATTACAGAGACCAAGTTTAAACTGGATCAGATGATCGCTGTGGCCGACCTGGAGCTGAAGGAAGAGAAGTTACAccgGTATTCCTCCTTCTTCTTTAGGCGGAAGGAGATATTTGTCATCCAACTTCTCAGCTACAGAAAGTCTCTCAAgccGGTCAATAAGAAGTCTTTTCTGCAGCATGTAGAGGATCTGTGTGCCAACGAGAACGCCAAGTTCCAGGAAGAGTTCGCAGAGCTACCCAAACTGCTGCACGACCTGGCTACATCAGACGCTGACCTTCCCTGGAACAGATCCACGAACCGCTTCACTAACATCAAACCCTACAACAACAACCGTGTTAAGCTGCTGTCTGAACCTGGCTTGCCTGGATCTGACTACATCAACGCTAGCTTCATCTCAGGCTATCTGTGTCCCAGTGAGTTCATAGCGACCCAGGGTCCTCTCCCCGGTACTGTGGCTGACTTCTGGAGGATGATCTGGGAGACTCGCACACAAACCATTGCTATGCTCACACAGTGCTATGAGAAAGGAAGGatccgGTGTCACCAGTACTGGCCAGAAGATAATAAGCCGGTGACAGTATTTGGGGACATCATCATCACCAAGTTGACAGAGGACGTCTATCCTGACTGGACCGTCAGAGCTCTCAAAGTGGAgaggcATGGGGACTACATGGTGGTTCACCACTTCAACTACACCTCCTGGCCAGAGCATGGTGTACCCGAGTCCAGCACCACACTCATACAGTTTGTTCGAGCCATCAGAGCCAACAGGCATGAGAACACTACTATAGTGGTGCACTGCAGTGCTGGCGTGGGCAGGACAGGAGTGTTTATAGCGCTGGATCACCTGATCCAACACGTCAGTGATCACGACTTTGTGGACATCTACGGTCTGGTGGCTGAACTACGCAGTGAgaggatgtgtatggtgcagaACCTGGCCCAGTATATGTTCCTACACCAGAGTACTCTGGACCTGCTGAACAGTAAAGGAAACAGCCAGTCCATCTGGTTCGTTAACTACTCTGCTCTGGAGAAGATGGACTCACTGGACGCTATGGAGGGTGATGTTGAACTGGAATGGGAGGAGACTACAATGTAAAGGCTGAGAACTTCTCAGTCAACTTCACACCTGATAAACACACCTATTCCTGAGTCATGGGGCCAAATCCTGGACATACTGACTGTTTGTCAGATGGATTGGTCAaccagagatagagggaggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210070 lncRNA upstream 925 75797248 ~ 75797581 (+) True otogl
TU210067 lncRNA upstream 17354 75773766 ~ 75781152 (+) True G185186
TU209784 lncRNA upstream 136864 75656200 ~ 75661642 (+) True gcsha
TU209791 lncRNA upstream 139450 75657844 ~ 75659056 (+) True G184959
TU209767 lncRNA upstream 188779 75609516 ~ 75609727 (+) True G184938
TU210089 lncRNA downstream 80 75842626 ~ 75843199 (+) False G185204
TU210088 lncRNA downstream 300 75842846 ~ 75843401 (+) True G185204
TU210090 lncRNA downstream 1215 75843761 ~ 75845575 (+) False G185205
TU210091 lncRNA downstream 1215 75843761 ~ 75844067 (+) True G185205
TU210097 lncRNA downstream 13583 75856129 ~ 75856857 (+) True G185211
XM_036934224.1 mRNA upstream 764 75730818 ~ 75797742 (+) False otogl
XR_005037899.1 mRNA upstream 61011 75736814 ~ 75737495 (+) True LOC118942028
XM_036934208.1 mRNA upstream 68288 75726061 ~ 75730218 (+) True LOC110496246
XM_021572025.2 mRNA upstream 75935 75719803 ~ 75722571 (+) True LOC110496239
XM_021572014.2 mRNA upstream 80263 75713057 ~ 75718243 (+) True gtf3c6
XM_021572129.2 mRNA downstream 51643 75894189 ~ 75902042 (+) False LOC110496295
XM_021572122.2 mRNA downstream 51809 75894355 ~ 75902042 (+) False LOC110496295
XM_021572113.2 mRNA downstream 51811 75894357 ~ 75902042 (+) True LOC110496295
XM_021572140.2 mRNA downstream 73091 75915637 ~ 75935997 (+) True LOC110496313
XM_036955699.1 mRNA downstream 97223 75939769 ~ 75982606 (+) False LOC110496319
TU209106 other upstream 711099 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 757416 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 912006 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 1084392 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 1263480 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 325111 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 325111 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 591271 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 691832 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 987867 76830413 ~ 76832500 (+) True G185718

Expression Profile