RNA id: XM_036955648.1


Basic Information

Item Value
RNA id XM_036955648.1
length 4430
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC110496262
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75846541 ~ 75885181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATCAGTGTCtgcgagggagagaggagagagaatctcTTATCACGGGAAGACAGGAATATTTACATCAGATCATTATctatttttctgtctctctctctctctctctctctttccattttgAAACGGAGTAGCCTATTTATCTGTCTCTTCGCTACCGATCATCTCAGAAACAGAACAGAGGATTAAAAACAGAAGAGAAGAGTAAAACAAAAGGAGAGACTAATGGAAGAATAAAAAGcaaaggagaagagatgaggaagaCCTCTCATCTCATTCATCTATTCTAGCAGGAAGAAGGAATTTAGGctacctctcctctacacttgatcatctctctctctttctctttctccttttctttctcttatctctttctctctctatggtcATGGCTGTGCAGGGGACCAGCCTGCTAGAGAACCCAGTTCAGGCGGTTCTGTACCTTAGAGAACTGACCACTATTGTTCAGAACCAACAGAGCCTCATCCAAACACAACGCCTGCGCATTGACGAACTGGACCTACGCGTGGATGAGCTGCTTGGGGAGAACAGGAATCTGCGTGAAGCAAGAGGTGTACAACCTCACCATCATCACCCAGACCACAACCCGAGCCTTCATTGTCATCATCCTCAGCATCAACATCCGTACCCACAAGACACCGGTTCTCTGCCCGCCCAGCCCATGCCTGAGGTTCATCCTGCTGAGACAGAAAAGTCCTCTCCTCAGCCCGCCAATCCGGAGGACATGCAGCTGGTACCGGCCCATTCCCAGCCACAGTCACTGAGCCCTTTGCAAGGCGAGGCCATCCTGGGCGAGGGGGAGGACAGCAGGGCCAGCATGGGCTGCCACACACTGGTTCCCCTGGTTCCCCTAGCTCCCCTCACTCCTACCACTTTCTGTCGCTCGCTGGCTCTCGCCAGGCAATCAGAGAGTCAGACAATACTACATCAGTTCTGTTGTCCTGCTCCAGAGGCTCCAGAGGCTGCTCTCACTGGCTCCTCCAGTGATGGGCAGCTGCTAGGTCTGGAGGGCGGGACTTCCTCCAgcagacaggaaggagaggggtCAGTAGGTGTGGCTCGTAGAGAAGGACCCAGCGACTATGAACTTGCCCTGGAGAACAAGaccaaacagatAGAGGAGTTGGAGCTGAGGTACGGTGGTCACCTGGTGTCGCGGCGCGCTGCGTGTCGTATTCAGACAGCGTTCCGTCAGTACCAGCTCAGTAAGAATTTCCAAAAGATCCGGAACTCTTTGTCAGAGAGCAAGTTGCCACGCCGCATTTCCCTGCGCCGGCCCAACCCCAGCCGGGGCCAGAACCCCACCCAGCGACACAGCTTCCTGTTAGAGAGTGGGGGCCCACCATTGCGCCCCAAaacacccccaccacccccctcACGTTCCACCTCCCTGCCGCCCTCAGCCTCCCCTGCCACGGGCCCTGGCCCCTCACTCACACAGCTGGAGGACTGCTTCTCAGAGCAGGTACGCTCGCTGGCCCATTCGATAGACGAGGCCCTGCGTGGGTGGAGCCTGTCGGAGGGGGTTGAGGGGGGGACAGGGGGGCTGTTGATGGACCCCGAGGTGTTTCGGGCGGCTGGTCAGAGTGCCTGCATGCCTCGCAGTGCCAGCTCCCTGCTCATGGCCTTCAGAGATGTCACCGTTCACATCGACACCAACAACTACACTGTCTCCACAActaccacctccacaaccaccactaccCACGGCAACACAGGGGCGGGAGGAAGCAGGCAAGCCTcaatggaagggggggggggagaggggggtggaggggtagggagagaaacAACAACCTCCCAGCTGGGGGGTGAGAAAGAGTTCCCTGCCCCCCCTCCCAGTGAGAAATTGTTGAAGGGAGGAGGGTTGAGGATGGAGTCAACTATgacagggcaggggagagagtTGGGGGGGCAGAGTGGCTCAGAGATACTCagttccacctctacctccacctcggCCCAGTCTAACCAGTATATCACTCAGTCCTCCTATCCCCAGTACCACCAGTATTCTACATACCCCCAGGCCCATCACCCCCAATCCCAGCCAGGGTCCCAGTCAGTCAGGGACCCCACCACTGAGGCCCTCCAGGCCCTGGTCCTCTCTCTGCCCAGAGACCGATGCCAGGACCCTGCCTCCTGCCGATCCCCCACACTCTCCACTGACACACACCGCAAACGACTCTACCGCATCGGACTCAACCTCTTCAACGTGAACCCAGAGAGAGGCATCCACTTCCTGATCACGCGTGGTTTCGTCCCAGACACGCCCATGGGCGTGGCCCACTTCCTGTTACAGAGGAAGGGCCTAAGCCGACAGATGATTGGAGAGTTCCTGGGGAACAGCAAGCTGCTCTTCAACAGAGATGTCCTGGACTGTGTGGTCGATGAGATGGACTTCTCTGGGATGGAGCTGGACGAGGCTCTGAGGAAGTTTCAGGCTCACATTAGAGTCCAGGGAGAGGCCCAGAAGGTGGAGAGACTCATTGAAGCTTTCAGtcagagGTATTGCATGTGTAATCCTGAGGTGGTGCAGCAGTTCCATAACCCAGACACCATCTTCATCCTGGCCTTTGCTGTGGTCCTCCTCAACACTGACATGTACTCCCCTAACATCAAACCTCAACGCAAGATGGGCCTCAACGATTTCATACGCAACCTACGAGGAGTGGACGACGGAGCAGACATCCCCAGGGAGATGGTGACAGGGATCTATGAGAGGACCCAGCAGAGAGAGCTACGCTCCAACGAAGACCACGTCACCTACGTCAGCCGTGTGGAACAGTCCATACTGGGCATGAAGACGATTCTGTCTGTGCCCCACCGTAGGCTGGTGTGCTGCTGTCGTCTGTTTGAGGTGGCAGACTTCAACAAACCCCTGAAACAGAAACTGGCCAACACCCAGAGAGAGGTGTTCCTGTTCAACGACCTCATACTTATCCTGAAGCTGTGTCCCAAGAAGAAGACTTCTGCCTCCTACACCTTCTGTAAAGCCATGGGTCTACTGGGCATGCAATTCCACCTCTTCAGTAACGAATactATGCTCATGGCATCACCATGTTGAGTCCGTTCTCGTCAGAGAAGAAGCAGATGGTGAGTTTCTGCTCCCCCAGTGGAGAGGAGCTCAGGAAGTTCACAGAGGAGCTACGAGAGTCCATCACTGAGGTCAACGAGATGGAGCAGATACACATTCaatGGGAGctgaagagagaacagggggtgCAGACTCACACCCCCCACACCAACGGAGGACAGATGGGCACACACTCAGCACACACAGGATCCCCcacagCCCAGAAAGATCTGTATGACAAGACTAGCAACAACACTGTGGAGGTGTCAATTCACAATAGGCTGCTGCAGACCTACCACATGACCCAGGCCAGCCCTGATAGGCTGCTTCAGACCTACCATGTGACCAGTCCTGACTCCACCCAACTGGCTCTGGCAGCACCCCTGGCAATGCTTAGCCCCACCCACCCTGGAGAACTCCGCCCAGACACCCTCATTCAATGCCAGCAGATCGTCAAGGTGATTGTTGTGGACCAGAGCGGCCAGGGGCGAATGGAAGCCTTCCTCAGTCAAGGAAGCCCCACCTCCCACCACCGCCTCATCCAATCAGCGATGTCCACACCAGTACGGATCAGAGAGGGATCTGAgccccctctgcctccccctcctcccccctacaACCACCCCCACCAGTACTGTCCCCCCGACTCCCCCTACCCCCTTCCACACACCCTTCCTCACCCCCTGCGCAGACGCAACTCTAGTGGTTCCCGCAGCCTCGTCTGACATATGTCCCCGGATCCTACCACACCTAATCCTCTGTCCTCTGAACTTTTGTTAAACAGTGATATactgggagaaacacacacaacacaaacactcatagacaaagatagagagggaaagggtGAGacgaggaagggaggaagagaaagagggaggtaaggaagtcagctgagagagagggaataagcCGAGAAATAGAGTGGGAGAAAATGGAGAGGTTTCAAATCAATATAAATTCAAAGTCATCTAACGATGTAATGTGTATTTTGGATTATGATGTCGTTTTGACAACATTTCTAAAGATAGATTTTCTAATCTGACAGCTCTTGTGACACAGTGTCATCTGTACATATCTATATCTGTACCTGGCTTTAGAAAGAACACTCTAGGATGCCCCTCTGACCCCCTAATCATAACCCTGCCCTGATATCACACAGCTGATGCAACAAAAGGAATTCCTCCCAGTGAATGGAACTGTCTGGACATAGatacatgcagttgaagtcggaagttaacatacaccttagccaaatacatttaaacacagttattcacaattcctgacattaatcctagtacaaattccctgtcttaggtcagttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210936 lncRNA downstream 1227 75843775 ~ 75845314 (-) True G185940
TU210983 lncRNA downstream 3065 75842601 ~ 75843476 (-) True G185985
TU210948 lncRNA downstream 48432 75796577 ~ 75798109 (-) True G185952
TU210947 lncRNA downstream 50089 75796244 ~ 75796452 (-) True G185951
TU209950 lncRNA downstream 115231 75636331 ~ 75731310 (-) True G185091
TU211005 lncRNA upstream 2178 75887359 ~ 75887638 (-) True G186006
TU210934 lncRNA upstream 47498 75932679 ~ 75935987 (-) True G185939
TU211114 lncRNA upstream 191237 76076418 ~ 76076724 (-) True G186106
TU211120 lncRNA upstream 198599 76083780 ~ 76084539 (-) True G186112
TU211132 lncRNA upstream 217002 76102183 ~ 76102549 (-) True G186120
XM_036955551.1 mRNA downstream 144735 75688498 ~ 75701806 (-) True LOC110501970
XR_005037881.1 mRNA downstream 182876 75661760 ~ 75663665 (-) False LOC118942024
XR_005037882.1 mRNA downstream 182890 75661762 ~ 75663651 (-) True LOC118942024
XM_021571963.2 mRNA downstream 190377 75644341 ~ 75656164 (-) False LOC110496199
XM_021571980.2 mRNA downstream 190377 75644341 ~ 75656164 (-) False LOC110496199
XM_021572081.2 mRNA upstream 16026 75901207 ~ 75915303 (-) False ddx11
XM_021572088.2 mRNA upstream 16026 75901207 ~ 75915303 (-) False ddx11
XM_021572101.2 mRNA upstream 16026 75901207 ~ 75915303 (-) False ddx11
XM_036955654.1 mRNA upstream 16026 75901207 ~ 75915303 (-) True ddx11
XM_021572187.2 mRNA upstream 99975 75985156 ~ 75988962 (-) False tnni1c
TU210008 other downstream 239893 75606227 ~ 75606648 (-) True LOC110496186
TU208774 other downstream 1113904 74730872 ~ 74732637 (-) True G184006
TU208238 other downstream 1735750 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 1852996 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 2170118 73676212 ~ 73676423 (-) True G182882
TU211053 other upstream 99978 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 207989 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 388343 76273524 ~ 76293392 (-) False G186197
TU211217 other upstream 389793 76274974 ~ 76293392 (-) True G186197
TU211248 other upstream 436626 76321807 ~ 76323890 (-) True si:dkey-234i14.6

Expression Profile