RNA id: XM_021572113.2


Basic Information

Item Value
RNA id XM_021572113.2
length 2781
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110496295
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75894189 ~ 75902042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTGTCGATAGTAAGATAGCTCAATGAGTAACGTTATTTGACTCCAGCTGAGAGTGTGCCAATCTCCCGAGCTGTCTGGGTCCACAACCCGGAGAGAGAGGGCTGTTGCCCGGGAGATGATGACTCCAGCACGTCAGTGGCTGGGGCCGCTGAGAGCTGGATGTAAAATGTTTACATGATCTCGCTGCACGGAAGATACACTAGctttatagctagctagctaactggacAGTACACAATGCTAACTTTGTTATATGGGACATCATTATAAGTATGAGTTGCTAAGGCTGTCACTTCCCAGGTTATTTATCTGTGTATGAGGTGACAGGTCCAGGAAGGACCAGAGCTGTCACGTCAGCTAAGGTTAAATGGTAAGCTGAGTCTGGGAGAAAGAATGAGAGCGACAGATGAAAGAGAGGTCACAAGCACCTGTAGGTGAAAAGTCAAAAAGgatGAGTGTGAAGCAGTGTCTGGAGGGTCAGGTGTACTCTGTGCCTCTGATACAGTCAGACCTGAGGAGGGAGGAGGCTGTTCACCAGATAGCAGACACCCTGCTCTACCTAGAGACTATCTCTACTGACATCtttaccagAGTGTCTGAGAGTGTAGAGCGGAACCGCTGTCAGCTGCAGAGTGTGACAGATCGAATCAGGCTAGCCCAGGCCCGTGTCAACAAGATCAAAGGTAGCAAGAAGGCCACCAAGgtgttctCCAGTGCTAAGTATCCAGCTCCAGAGCGTCTCCAGGATTACTCCTCCATCTTCAGTGGAGCCACAGACCCTGCCTCCCAGACACGCCCCCGATACCGTATACAGGCCAAACTACGACCCCTTGACGACAAGGCCCTGCAGgAGAAGTTGTGTTATTACCCGGTGTGTGTGAGCAGTAAGAAGCGTTCGGAGGATGAGACCGAGGAGGGGCTGGGCGGTCTGCCTCGAAACATCTCCTCTGTCAGCTCCCTGCTGCTGTTTAATACTACAGAGAACctGTATAAGAAGTATGTGTTCCTGGACCCCCTGGCTGGGGCGGTGACTAAAACACACACCACTCTGGagacagagaaggaagagaaaccATTTGACGCTCCCCTATCCATAACCAAGAGAGAACAGCTGgagagacagACAGCAGAGAGCTACTTCTATGTTCCAGACCTGGGTCAGGTCCCAGAGATAGACGTCCCCTCCTACCTACCAGACCTGCCAGGCATTGCTGACGACCTGTCCTACAGCCAAGACCTGGGGCCCGGCATCGCACCCTCTGGACCCACACACACCTTCCCTGAACTACCCTCCTTCTCTGGGGAGGACATGCCCGGTTCTCAATTCCAAGTTGCAGTCCCGCCTCCTCCCCCActtccccctcccccaccaccagAGCCCACACAtatccccacccctccccctggtctcccccctcctccacctcctcccccaccaGAGCCTGCAAATAGCCCTGCAGACGCCagcacagCTCCTGTAGTGGGCGCTCCCAGCGAGGTGGTTGAATCAAACAGCCGGGCCAGTCTACTAGAGTCCATACGCAACGCTGGAGGCATTGGAAAGGCCAAACTACGCAACGTCAAAGAACGcaagatggagaaaaaaaaacagaaggaGCAGGAACAagTGGTAGCAGCAGCCAGTGGAGGAGACTTCATGTCAGATCTCTTCAATAAGTTGGCCATGCGAAGGAAAGGTATCTCTGGTAAGGGTCCTGTAGGCGGGGACTCAGGGGAGGGCCCAGCTGGATCTGGCAGCGCATTCGCTAGGATGTCCGATGTAATCCCGCCTCTTCCTGCCCCCCATCAGCCAACCACTGAAGACGAGGACGACTGGGAGGCCTGAGACTAGCCAATCAGAACCAATGGAACTCTGAGCACATCTAGCTCTAAGCCAATCAAAGAAAAGAATACTGAGGAAGGAAACTAACACtcgatatatttttttttacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccgggccaattatgcgccgccctatggtactcccaatcacggttggatgtgatacagcctggattcgaaccagggactgtagtgacgcctcttgcaccgagatgcagtgccttagactgggATCCCTAAAAAACAAATGTGATGCTGTACTGTCTGTAGGGTTCCTTcaagatcagggatgggcaactgtatgtatatattttttgactCAGTCAGGTTCTCAACTTACTGTTAcgttatgtattatattattctaaGGTGCAGTTTTgacatttggttgtgcatcagcagtcactcaattagcccatgtcagcaaaaaTGATTTAGTCTAGTGGCCAGCTAATTTACCAatctatctaaacttgtagtaagcatTGTTGAATTACAGACCCGGGTGGAGCCCATTGATCATcagttatcatattaaaaactgcaaacatttgcctCCACCCTATAGGGGGGGGCGCAAAAAATGTTTGCTCATGGGGGGAGCAGCAGACCCACGAGCCACTGCGGCTGTTCGTGAGTTCCGTTTTTTGTGTGGCCCCCACagcccatcaaagttgcccatccctgttccAGATGATCCTTATTGAGAGAATACTGGACAAACAACTACAGGAGATAAGTCAGACCTCATCTCAGCATTATTAAGTATAATCAAGTAACACGTAAATATAATTACATAACTAACACCACACTAAAGCAGCACAACATTTCTATCAGAATGTTATGAACATCATTCAATAAAAATTATTTTGCATAAAA

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005769 early endosome cellular_component
GO:0071203 WASH complex cellular_component
GO:0043014 alpha-tubulin binding molecular_function

KEGG:

id description
K18461 WASH1; WAS protein family homolog 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210097 lncRNA upstream 37500 75856129 ~ 75856857 (+) True G185211
TU210090 lncRNA upstream 48782 75843761 ~ 75845575 (+) False G185205
TU210091 lncRNA upstream 50290 75843761 ~ 75844067 (+) True G185205
TU210088 lncRNA upstream 50956 75842846 ~ 75843401 (+) True G185204
TU210089 lncRNA upstream 51158 75842626 ~ 75843199 (+) False G185204
TU210114 lncRNA downstream 82008 75984050 ~ 75984401 (+) True G185228
TU210222 lncRNA downstream 202081 76104123 ~ 76104424 (+) True G185326
TU210252 lncRNA downstream 248493 76150535 ~ 76150879 (+) True G185352
TU210272 lncRNA downstream 285533 76187575 ~ 76187870 (+) True G185367
TU210281 lncRNA downstream 301214 76203256 ~ 76204036 (+) True G185376
XM_036955622.1 mRNA upstream 51811 75798506 ~ 75842546 (+) False ptprq
XM_036955623.1 mRNA upstream 51811 75798506 ~ 75842546 (+) False ptprq
XM_036955624.1 mRNA upstream 51811 75798506 ~ 75842546 (+) False ptprq
XM_036955629.1 mRNA upstream 51811 75798506 ~ 75842546 (+) False ptprq
XM_036955641.1 mRNA upstream 62885 75829380 ~ 75831472 (+) True LOC118942030
XM_021572140.2 mRNA downstream 13595 75915637 ~ 75935997 (+) True LOC110496313
XM_036955699.1 mRNA downstream 37727 75939769 ~ 75982606 (+) False LOC110496319
XM_036955696.1 mRNA downstream 37728 75939770 ~ 75982606 (+) False LOC110496319
XM_036955700.1 mRNA downstream 55570 75957612 ~ 75982606 (+) True LOC110496319
XM_021572234.2 mRNA downstream 91840 75993882 ~ 76053143 (+) False c2cd5
TU209106 other upstream 806950 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 853267 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 1007857 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 1180243 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 1359331 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 265615 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 265615 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 531775 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 632336 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 928371 76830413 ~ 76832500 (+) True G185718

Expression Profile