RNA id: XM_036955654.1


Basic Information

Item Value
RNA id XM_036955654.1
length 3954
RNA type mRNA
GC content 0.51
exon number 28
gene id ddx11
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75901207 ~ 75915303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTTCACCGGCGTGTCATTGGTCCGTTTCTGAAACGCTTGGCGCGCTTGTAGAAGATGCACGAACTCTGTCAACACATATTTGCTAGCTCCAGCCAGCCTCCAACTAGCCATTGAACTAAAATCAAACAATACCTTGTTCTAACCCCCAGGCAGCAAGATCATTATTAGCAGTGATGGAAGAGGCTGGTGCcccccacttccccttcccctacCAGCCATACCCCATCCAGGAGCAGTTCATGCAGGCCCTGTATGGGGCACTGGAGCACGGCAAAGTCGGCATCTTTGAGAGCCCTACtggaacgGGCAAGTCTCTGAGTCTGATCTGTGGAGCTCTGAGCTGGCTGAGGGACCATGAGgaaaagaggagacaggaggcaGACAGACTGCTGCAGGGGGATGGAGgtacatctctctccatctcctcatccctctctaccACAACATCCTCCACCCCGCCATCCTCCTCTGCTGAGCCTGACTGGATCACTGACTTTGTGCAGAAGAAGGCAGAACGGGACTTTGTGTCTAAATTGAAGGTAgatgaAGAGCTgcggaggaagaagagggaggaacACCTGGAAATGATCAGAAACAACTCTCAGCTGAAATACGCTCTGAAGAGAAAGagCTGTGAGGATGATGAGGCAGTGAAGCTGCTGCAGCTAAGTAAGGACCCCCAGGAGGGGGAGCTAAACAACCCTGAGGAGGAGCTTATTGTGGCTGAGTATGAAAGCGATGACGAATCAAAGACCAAGAACAAGTTCTGTGGTGGTGATGACGATGATGAAGATGACTTGTTGGAGGAGCACGTCACCAAGATCTACTACTGCAGCCGTACACACTCCCAGCTGGCTCAGTTTGTCCATGAGGTACAGAAGAGTCCCTTCAGCCAGGACATCAGCCTGGTCCCACTGGGGTCCCGacagAATATGTGTGTAAATGAGGAGGTGCGTCGGCTGGGAAGCGTCCAACGTATCAACGACCGCTGTATGGAAATGCAGAAGAACAAACACGACCAGCGTCCGAAGGAAGTGGAGGGTGGTAAGAGGAAGAGGGGTGCGCCTAAGGCGGTGTGTCCGTACGTAGGGGCTCAGGGGCTGCAGACACTGAGGGATACAGTGTTGGGGGCGGTACGAGACATAGAACAGCTGCTCAGCCTGGCCAGAGAAACACGCTCCTGTCCCTACTACGCTACACGCCTCGCTATACCCCCCGCACAGctgGTGGTGCTGCCCTATCAGACTGTACTTCATGAGGGGACGAGGAGAGCATCGGGGGTGCAGCTCAAAGGACAGGTGCTGATCATAGATGAGGCTCACAACCTCAGTGACGTTCTCTCCTGTATACACAGCTCAGAACTAACTGgagcacagCTATGCCGTGCACACTCCCAGCTTGCACAGTACTCTGAACgctacaggagtCGACTGAAGGCCAAGAACCTGATGTACATTAAACAGATCCTTTTTGTGGTGGAGGGGCTGGTGCGTGTGCTGGGagGTAAGGTGGGGCAGAATCCACACAGCCAGACTACTCAGCCAGTAACCGAACTGCTGACCATCAACAACTTCCTGTTCAAGGCTCAGATAGACAACATCAACCTCTTCAAGGTACAGCGATACTTTGAGAAGAGTATGATCAGCAGAAAGCTGTGTGGCTTCATAGAAAAGTATGCAGGTACAGGTGTGacgtcacacacacaaacctcacacacacagacagccaacAAAGAGAATCGTCGGACTGAAGGCCTGAACCGCTACCTACAGACACTGCAGAGCAGCCAACAGCCtgacacagagTCACCTCCAGGCCAGCAGGGAGCAGCAGAGGAGAGGGAGCTGGCAGCATCCCCTATGATGCAGGTAGAGGGCTTCTTCATGGCTCTCACCAACGCCAACACTGACGGACGTGTGGTGCTACACacacaagGTAATGTAGCGGTGAGTAGTATGAAGTTCCTCCTGTTGAACCCAGCGGTCCACTTTTCTCAGGTGCTGAAGGACTGTAGAGCTGTCATCATCGCTGGAGGAACCATGCAGCCTGTGTCTGACTTTAAGCAGGAGCTGTTGTTCTCTGCTGGTGTTGGAGCGGAGCGCATCATAGAGTTCTCCTGTGGTCATGTGATTCCTCCAGAGAATATCCTACCCATAGTGCTGTGCAGTGGCCCGTCTGGTCAGGAGCTGGAGTTCACCTTCCAGAACAGAGACACACCACACATGatggaggAGACTGGCCGTGTGCTGTCTAACCTGTGTAACGTGGTGCCGGGAGGCGTGGTGTGTTTCTTCCCTTCCTACGATTACTCCAGAAGGATTCTGGAGAACTGGGATGCCAGCGGAGTTCTGGCACGCCTCTCTAGCAAGAAGAAGATCTTCCAGGAGCCAAAGAAAGCCAACCAGGTGGAAAAGGTGCTCAATGAGTTCTCACGCACAATCCAGaggtgtGCTGTGGATGCGGGTACACTCTCTGGAGCGTTGCTGTTCTCTGTGGTCGGGGGAAAGATGAGCGAGGGTATCAACTTCTCAGACGACCTAGGCAGgtgtattgTGATGGTAGGGATGCCATATCCAAACATCAAGTCTCCAGAGTTAAAGGAGAAGATGGCTTACCTGGACAAGAACCTGCCTCACTCTGGTGGGAGGAGTCCAGGCCAGGCTCTGATAGAGAACCTCTGTATGAAGGCTGTCAATCAATCCATAGGAAGAGCCATCCGTCACCGTGAAGACTATGCATGTATCGTTCTGTGTGACCGACGGTACTCCCGACCTGCAACGCTGGCCAAACTCCCCGACTGGATcagagcacacacgcacacacacaccagcttcGGCCCTGCCTTCGCCAGCCTGAGACggTTCTTTATGGAGAAGAAGAAACAGCAGCAGCTATGAGAGGAAGGGGTAGCAGGTGTTCTGGTGTGTAACGCTGGTCAGAAGAGAGCTACCTCACCTCTCGGATATCCTCGCTCTGGAGACAGGACTTCTGATTGGATTCTCCTCGAGGGATGTTAAAGCACACACTCGTCAAAGCATGATGGTTGAGGCTCTTTGTATGTTTTACACCCATACCTCTCCAACAGTACAGATCAGTCAACTCTCCACTGCCAGTATTTTATGCAAAATAATTTTTATTGAATGATGTTCATAACATTCTGATAGAAATGTTGTGCTGCTTTAGTGTGGTGTTAGTTATGTAATTATATTTACGTGTTACTTGATTATACTTAATAATGCTGAGATGAGGTCTGACTTATCTCCTGTAGTTGTTTGTCCAGTATTCTCTCAATAAGGATCATCTggaacagggatgggcaactttgatgggctGTGGGGGCCACACAAAAAACGGAACTCACGAACAGCCGCAGTGGCTCGTGGGTCTGCTGCTCCCCCCATGAGCAAACATTTTTTGCGCCCCCCCCTATAGGGTGGaggcaaatgtttgcagtttttaatatgataactgATGATCAATGGGCTCCACCCGGGTCTGTAATTCAACAatgcttactacaagtttagatagatTGGTAAATTAGCTGGCCACTAGACTAAATCAtttttgctgacatgggctaattgagtgactgctgatgcacaaccaaatgtcAAAACTGCACCttagaataatataatacataacgTAACAGTAAGTTGAGAACCTGACTGagtcaaaaaatatatacatacagttgcccatccctgatcttgAAGGAACCCTACAGACAGTACAGCATCACATTTGTTTTTTAGGGATcccagtctaaggcactgcatctcggtgcaagaggcgtcactacagtccctggttcgaatccaggctgtatcacatccaaccgtgattgggagtaccatagggcggcgcataattggcccggggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaaaaa

Function

GO: NA

KEGG:

id description
K11273 DDX11, CHL1, CTF1; chromosome transmission fidelity protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211005 lncRNA downstream 13569 75887359 ~ 75887638 (-) True G186006
TU211000 lncRNA downstream 24077 75876195 ~ 75877130 (-) True G186001
TU210990 lncRNA downstream 43529 75856463 ~ 75857678 (-) True G185992
TU210936 lncRNA downstream 55893 75843775 ~ 75845314 (-) True G185940
TU210983 lncRNA downstream 57731 75842601 ~ 75843476 (-) True G185985
TU210934 lncRNA upstream 17376 75932679 ~ 75935987 (-) True G185939
TU211114 lncRNA upstream 161115 76076418 ~ 76076724 (-) True G186106
TU211120 lncRNA upstream 168477 76083780 ~ 76084539 (-) True G186112
TU211132 lncRNA upstream 186880 76102183 ~ 76102549 (-) True G186120
TU211133 lncRNA upstream 187427 76102730 ~ 76103045 (-) True G186121
XM_036955648.1 mRNA downstream 16026 75846541 ~ 75885181 (-) False LOC110496262
XM_036955650.1 mRNA downstream 16026 75847418 ~ 75885181 (-) True LOC110496262
XM_036955551.1 mRNA downstream 199401 75688498 ~ 75701806 (-) True LOC110501970
XR_005037881.1 mRNA downstream 237542 75661760 ~ 75663665 (-) False LOC118942024
XM_021572187.2 mRNA upstream 69853 75985156 ~ 75988962 (-) False tnni1c
XM_021572222.2 mRNA upstream 69853 75985156 ~ 75989010 (-) False tnni1c
XM_021572168.2 mRNA upstream 69853 75985156 ~ 75989027 (-) False tnni1c
XM_021572214.2 mRNA upstream 69853 75985156 ~ 75989056 (-) False tnni1c
XM_021572177.2 mRNA upstream 70308 75985611 ~ 75988974 (-) False tnni1c
TU211001 other downstream 23147 75877359 ~ 75878060 (-) True G186002
TU210008 other downstream 294559 75606227 ~ 75606648 (-) True LOC110496186
TU208774 other downstream 1168570 74730872 ~ 74732637 (-) True G184006
TU208238 other downstream 1790416 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 1907662 73993078 ~ 73993545 (-) True G183096
TU211053 other upstream 69856 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 177867 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 358221 76273524 ~ 76293392 (-) False G186197
TU211217 other upstream 359671 76274974 ~ 76293392 (-) True G186197
TU211248 other upstream 406504 76321807 ~ 76323890 (-) True si:dkey-234i14.6

Expression Profile