RNA id: TU211053


Basic Information

Item Value
RNA id TU211053
length 1853
RNA type TUCP
GC content 0.41
exon number 8
gene id tnni1c
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75985156 ~ 75989573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggttagagtgttgggccagtaaccgaaaggttgctggatcaaatcccctggctgacaaggtacacatctgtcattctccccctgaacaagacagttaacccactgttccctggtaggtcatcattgtaaataggaatttgttctaaactgacttgcctagttaaataaataaaaatgtaggaccctttccacagagggttctatgtagaaccaaaaaagggttctcctaggCAAAAAACCCCTTTGGAACctttattttaaatttttaaagagtgtacctctctctcaaacacatacactcactcaAACAGCACAGCTCGATCACACCAGATCATTACAGTAACTTAACTGAATACAGTGATAGAGCTGTGTCTTGTGTGCTGTTTGGGTTATAATCTTGTCAGGCTGTGGGAATCTGTAACATGAGTTAACAGTCCAAGATTTCCAGTTGATCCCGCATGATGGACTGATTGATTTACAGCAGTGTCACCGGGTCACAGGAGGGATGGCATGCTTCACACAGGCAGCCAATACcattgtctggtgtgtgtgtactATATATACCAGCCGATGCCTACATGCTTGCACAAAAGCCTTCAGTCCAAAAGCTTTCGACAAAGAGAGCACCTAACAGTGCAAATCAGTTTTTCAGGgatgtctctctgactctacgTCTCTGATACAAAACAGACTGCTCTCTCTCAAAGGTTCAACAATGGCTGATGAGTAAaaTGCCCCCATGCCAATGGCTCCAAAGGTCGAACACACCAAGGTAGATCTAATGTAAAGCCCAAGTCCAAGATCTCATCCTCCCGCAAGGTGTCACTGAAGATCCTCCTATTGTCACGTGCATTAGAGGAGCTGGAGGCAGAGAAACAagccagagaggaggagaaggttcGCTACCTGGGGGAGCAGCTACCGCCCCTGCAGGTGTCTGGCCTGTCCTTGGAGGAGCTGCAGaAACTGTGTAAGCAGCTCCATACCAGGATTGACCAAGTGGATGAGGAGCGCTATGACTGTGAGGCCAAAGTCTACAAGAACGGCAAAGATATCCACGAGTTGAAGCTGAAGGTGATGGACATGGGGGGTAAGTTTAAGAAGCCAGCTCTGAGGAAGGTCAGAGTATCAGCAGAAGAGATGATGAGAGCACTGCTGGGCACCAAACACAAAGAACATATGGACCTCCGATCCAACCTCAAGTCTGTTAAGAAAGAGGACATCAAACAGGAGAAGGAGGGCAACCTGGAAGTGGGAGACTGGAGGAAGAACGTGGAGGCCATGTCTGGCATGGAGGGCAGGAAGAAGATGTTTGATGCTGGCGGGGGCCAATAAGGTGGTTCCTCACCACATGGTGGTGGGGACACAGACTTCCATGACACTGaggagtaaaaaaaaatgttggagagagaagagagagagtggagatagTGAGAGGGACTGGGAAAACCTGTGTCCATGACTGAACTAAAGGTGCACAACTCAGGTCCTAAACCAGGGCTTTAAGACACCACACTTCACACTTCTGAGTCTCTGTGTCAAAGGTAttactgctgtagagctcatgtTGCCTGCTGCAGGTTATAGCGTAGCTACAAAAGTGCCTATCAAATCACTACTGCATTTAGTCTAACCAATGTTCTCTCAAGtagtatctttaaaaaaaaatcaagttAAGTTTAAGGAATGTGAATATACAAAACTGCCCAATGTTCTTTGTAAAAAGTCAGAAACTTGTAAATAGTAATTGTGTTGACTTAGCCTACACATACTGACTTGTCTGTAGTAACATAGCCAAAGGAAATGACATAACCACAAAAACATATTAAAAATCACTGTAATTCAAAAACC

Function

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210935 lncRNA downstream 49172 75871061 ~ 75935987 (-) False G185939
TU210934 lncRNA downstream 49172 75932679 ~ 75935987 (-) True G185939
TU211005 lncRNA downstream 97521 75887359 ~ 75887638 (-) True G186006
TU211000 lncRNA downstream 108029 75876195 ~ 75877130 (-) True G186001
TU210990 lncRNA downstream 127481 75856463 ~ 75857678 (-) True G185992
TU211114 lncRNA upstream 86845 76076418 ~ 76076724 (-) True G186106
TU211120 lncRNA upstream 94207 76083780 ~ 76084539 (-) True G186112
TU211132 lncRNA upstream 112610 76102183 ~ 76102549 (-) True G186120
TU211133 lncRNA upstream 113157 76102730 ~ 76103045 (-) True G186121
TU211135 lncRNA upstream 117205 76106778 ~ 76107013 (-) True G186123
XM_021572081.2 mRNA downstream 69856 75901207 ~ 75915303 (-) False ddx11
XM_021572088.2 mRNA downstream 69856 75901207 ~ 75915303 (-) False ddx11
XM_021572101.2 mRNA downstream 69856 75901207 ~ 75915303 (-) False ddx11
XM_036955654.1 mRNA downstream 69856 75901207 ~ 75915303 (-) True ddx11
XM_036955648.1 mRNA downstream 99978 75846541 ~ 75885181 (-) False LOC110496262
XM_021572362.2 mRNA upstream 77227 76066800 ~ 76069833 (-) True miox
XM_036955816.1 mRNA upstream 104749 76094322 ~ 76099909 (-) False adm2b
XM_036955838.1 mRNA upstream 145790 76135363 ~ 76167481 (-) False ppp6r2b
XR_005037930.1 mRNA upstream 145790 76135363 ~ 76167483 (-) False ppp6r2b
XM_036955821.1 mRNA upstream 148079 76137652 ~ 76167481 (-) False ppp6r2b
TU211001 other downstream 107099 75877359 ~ 75878060 (-) True G186002
TU210008 other downstream 378511 75606227 ~ 75606648 (-) True LOC110496186
TU208774 other downstream 1252522 74730872 ~ 74732637 (-) True G184006
TU208238 other downstream 1874368 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 1991614 73993078 ~ 73993545 (-) True G183096
TU211125 other upstream 103597 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 283951 76273524 ~ 76293392 (-) False G186197
TU211217 other upstream 285401 76274974 ~ 76293392 (-) True G186197
TU211248 other upstream 332234 76321807 ~ 76323890 (-) True si:dkey-234i14.6
TU211715 other upstream 1180390 77169963 ~ 77171639 (-) True LOC110496628

Expression Profile