RNA id: XM_021572296.2


Basic Information

Item Value
RNA id XM_021572296.2
length 5541
RNA type mRNA
GC content 0.48
exon number 27
gene id c2cd5
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75993882 ~ 76053143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACTTCTCTCCCCCATGGACCGGTTTGTACATGAAACATCCTCCATTTAGGGTGCACAGGCGTTGATTTACTCAACTCATATGTGGGAAAAAAATCGTGTTTTTGTTTTTTCGGACAACTTCTGGATGTTGCACACCTCTTGCGCTTTTTGCTTACTCCTGGTTGAACACGGTGGGCAACATCAGCAAGTAACGTTAGCATTAGACACTCTAGCATGGTGGTTGAAAATGTTGTTTTATTAAGACAGTGTGCATATGTCCCCCGTTTTTTTCACCAACAAACCATTAAATCGAGCTAAGGAGGTTACGGACACAAGTGCAGCCTGAGTGGAGGATGTTTTACGTACGATCCGGTCCATTTGTGACACCCTGGGCggcggggtagcctagtggttagagcgttggcttagtaaccgaaaggttgcaagttcatatcctcgagctgacatggtacaaatctgtcgttctgcccccgaacaaggctgttccgccgtcattgaaaataagaatttgtttttaactgacttgcctagttaaatagtaAAGCGTAAAGTAAGATTACAAACGACGTAAATGGAATAATAGCGACATCATGCGGTCAGTTGGGCTAAGTATGAGAAAGCCTAACGTGAAGATGAAGCCCGTGTTACAGTTTTACATCTCGTGAACAAGATTTAGTCACCACCTTTCCACCAGAAGAGAAGACAGCGCTGGCTAGCATTTTCCATTCGTTGAGCTGGCCGGGGATGCTAACCGCAATGTGTGTACAGTGAATTTGAATTagcttttttttaaagcagtCAATGGCCATAAAGCGTAGTTATAGTAAATATTAGCCACATCTACCGGGCTTTTGAGAGAAGATCTCGTCATGTTTGGTAGAGATGCGGAGGTCTGGCGCGCGGGCTGCCAACAAAGTCCGTCTGAAAAAACGCTGCTGTTTCCCCAGCTCTCTCGTTTGACATAGTCCGGGTGATGACAAAGCTGAATCATGCCGGGTAAATTGAAAGCTAAGATTGTGGCGGGGCGTCACTTACCAGTCATGGACAGAGCCAGCGACCTCACTGATGCCTTTGTAGAGGTCAAGTTTGGCAACACAACTTTCAAAACGGATGTCTACCCCAAGTCCCTTAACCCACAGTGGAACTCAGAGTGGTTCAAATTTGAGGTGGATGATGAGGATTTACAGGATGAGCCGTTACAGATCACAGTGTTGGACCATGACACTTACAGTGCCAACGACGCAATAGGGAAGGTCTACATTGACATCGACCCTCTGCTGTCCAGCGAGGCTGCTACCGTCATCTCTGGATGGTTCCCCATCTACGACACTATACACGGTATCAGAGGGGAGATTAATGTTCTGGTAAAGGTGGACCTCTTCAACGACCTAAACCGCTTCAGACAGTCCTCCTGTGGGGTCAAGTTCTTCTGCACAACATCCATCCCGAGGTGTTACCGCGCGGCGCTGGTCCATGGTTTTGTTGAGGAGCTGGTGGTGAACGAGGACCCGGAGTACCAGTGGATTGACCGCATCAGAACCCCCAGGGCTTCTAACGAGGCCCGCCAGCGACTCATCTCCCTCATGTCTGgtgagctGCAGAGGAAGATCGGTCTGAAGGTGTTGGAGATGGGTGGTAATGCGGTGGTGGGCTACCTGCAATGCTTTGATCTGGAGGGAGAGTCGGGTCTGGTGGTCCGAGCCATCGGCACAGCCTGCACTCTGGACAAACTCATCCCTGGGAGTGCTtccaacaccaacacacaccccaacactgCCCCGGCATCCAATGCCTGCAACTCCCCCTCTAAGGAAATCAAAGAGCCCGTGTTCAGTGAGGACCCAAcccaccccctctctgtccctcccacccctctcagaacacttccttcctcttcctctcctcctcccttctctccatccAAGCTATGCAGTCGCCAGTCCTCCTCCTCAGACACAGACCTCAGTCTGACGCCCAAGATGGGGATGGGGAGTGGGATCAGCGTTGGGAAAGAGGCAGGGCCTCTGAAGACCCTCCTCCGGCAGCAGGCCCAATCAGCATTGGAAcagaggGAGTTCCCCTTCTTCACGTTGACTTGTTTTCCCCCCGGCTTCCTGGTTCACATCGGGGGAGTGGTCAGCGCCCGCTCGGTCAAGCTGCTTGACCGCATACACAACCCTGCATTGGGTAACACACGCTCTTACAAACTGCTAGACTGGAATAGTGTTGCTGCAGacgAGCCAGAGACGAGGGACGCGTGGTGGGAGGAGATTCGTCAGGAGATCAAGTCTCATGCCAAAGCCCTGGGTTGCCACGCTGTGGTGGGATACAGCGAGAGTACCACCATCTGGTACATTACACACACCATACTTAGACCAACCTCTATTTCAAGTGAGGAGGTGTGTATCCTGTCTGCGTCGGGCACGGCGGCCATGTTGAATCCCAGGTTCATGCGTGAGGGCTGTTTGGACGCCGGCGGCAGCGACCAAAGGTTGTCAAGGCAACCACCCCTCGGCATGGTTGGGTCGGAGAGGGCAGAGGGGGAAGTTAGCTCATCTTGGCTGgggTTTGATGATGCGTCACCCCCTAGCTGTGGATTTTGTCACATCCCATATGATGAGTTCAACATGCCGTTCCCAGCTCAGCTCACATACTGCTACCACTGTAGGAGACAGAAGGTCCCTGATGTGCTCTTTACTACCATAGACCTACCTGCTGAGGCTGCTGTTACTGGGAAGGGCTGCCTCATACAGGCCAGGTTGTGTCGTACCAAGAAGAAGGCCCAAGGGGAGGTGAATGCCACAGCCATCTCTAACCTCCTCCCCTTCATGGAGTATGAGCTACACACCCAGTTGATGAACAAACTGAAGCTGCGCTGCATGAACGCTCTGTTTGGGCTCCGCATTCAGATCAGTGTGGGAGAAAACATGCTCCTAGGACTAGCTtctgcAACGGGTGTATACCTGTCAGCTCTTccagctccaggtggtatccagATAGCTGGTAAGACCCCCAGTGACCTGAGCTATGACCAACACATTTCAACCATGCAGAAGCGCATCAACGACACCATCGCCATGAATAAGGAGCTCTACAACATACACCCCccggagtGTATAGAGGAGGTGGTGGGGTCTCCTATCCCTGACAGACAGCGGTCCAGACTGTTCAGGTCTACCTCTGAGAGTTCAGATGAGCTGTCAGAACTAGACCTGTCCCACGGCAAGAAGGACGCCTTCGTACTGGAGATTGATGACACTGATGCAGTAGAGGACATCCAATCCCTTCTCACTGATGCCCCCATgcctgcagggttttACAGCTGTAACACGGAGGTCATGCCTGGGATTTACAACTGGACTTCAGGGCTACAGATGTTTACATCCGTCAGGGTGTACAGACTCAATAATGCCAATCTGACCAACCAGGGCCTCAACAAGATCTTCACTGACCTCTGTGAGAATTTACTCAAGAGTCTATACTTTAAGTTACGTTCCATGATCCCCTGCTGTCTATGCCATCTCAACTTCACTGTAGCCGTACCAGAGGAAGAACTCATACAGgTGGCGGTGACAGCTGTAGCCATGAGTTTTGACAAGGAGACTCAGCTGGCAGCAGACAAGGCTCTTAACAAGGGGAGTGGTGAGAATGAAGAGCAGCTACAGTTTTCTATGGAGCTGTGTGGAGAGTCAACGTCTTCCAACAACCAGCCTACAGCCAAACCTTCAGGTCTTCCAGAGAGTGCCATGACCCACTCCTCATCTCGAGCCTCGTCCTCAGAGCGCTGCAGTCCTCTCCCAGAGGTGCGGTCCCGGTCCCTACGCTCCACCAGGTCGTTGCCATGCGGTGCCCCTGTTACCGTGGTGAAGATGACTCCTCTGTCCTTTCTCCCCAGGACGCGTATAGTCAAATACTTGGGAATCATCAACATGTTCTTCATTAGAGAGACCACGTCACTACGAgaggaGGGGGGTGTAAGTGGGTTCCTGCATTCCTTCATAGCGGAGGTGTTTGCCATGGTCCGTGCCCATGTAGCAGCTTTGGGGGGCAACGCCGTAGTGTCATACAGCATGAAGGAGTGTGTCTTCATGGAAAATCCCAACAagaaccaggctcAGTGTCTGATTAATGTTAGTGGTGATGCTGTCATCTTTGTCAGAGAATCAGACCAGGAGGCCATACCCCCTCTGATTACTTGCGGACAGACCAGCACCACTGGGGCTGATGGGaccacatgacacacacacacacacttgagtcTAGCCATCCAAATAATTGTGATTTATGTCTGCCATAAACAGACTAATTGATGGAGAAATTGTCCATTAAGGCACTCTACATAAGCCATTTAGAGGCATTATGTaatgtcttgtctgtctgtctgtctgtgtctgtctgtctgtctgttggtgaTATAATAGACATTCCAATACATAGTGAAGTTTTAGGCAGCTAAAAGACTGATTGCTCTCCATCCAGACTCAGCAGTCACTAGCCGGCCATTCTAAAGTGTACAGGGTAGTCATTAGTACACAGCCATGGTAAAGAGTACCATACTCAGTACAGCAGGGTTTCCCAATAGGCAGCCCGTGGGCCAAATTCGACCCGTGTGTGGTTTTATATCATTTCAGAGCAAAACAAAACATGGTTTTATATCATTTTTGTTCTTTGACATaagactgtaaaatcaccaggaaattagctcaaagtgattttaatttaggaaatctgtttcCAAGTATTCACACGCATAGCTATAGGCATATGTGATCGTATCCTAATATAATAAAATCAAATCGTGTGAAATGATTGTTTTTGTGAAATActatatctgtttgggattcttgtggtcaatttgaaGGGTACTAATTATTTATAACTATTTTCTGGACCCCTGACCATCTGCTCAAGGAAAAGTAGGCCCACGATTTAGTAATTTGGGACCCCTGCAGTACAGGGTAGCCACTACTGAAGATGGCCATACTAGAGAACAAAATTGAGTTTAATTGTCTGTCACTGTATGACAATGTTTTTGgcaaacatgcacacaaacatacacccACCCTGTGGACAGCCTCCTGTCACACTCCTGGCTGTCCTGACTGCGGCCTCAACGGTGTCCATACTACTGAACTCTCCTGTTTTTAACAATCATGTAAATGCTGGAAAATAAACTTATTGCGATGACCTCTTTTTGTTCATAGTCTGGGTGCAACGATAACTTTTATTTGCGTAAATCTACTCTAAAATCTGATTTTAGTATTTTTATAAAGTTAAAGTATATTAGTGGTGTCTAATTTTGCATGTCTAATGAAGTCCTTGAAGTTTGATTCATTGTGTAAGAAGTAAGGGTACGTGATGCGTTCTACTGTTAATGAATACaacctgtttctctttctctgtaagacttgaatataaataaatatagagTGTGTTACTTAGTGTCTAGCAGCATGTGTCTACTATTGCCATGACTCTGTCAGCTTGTTGCCTGAGATAAACAGTACTGCACAATAAACTGAACTATAGTGAAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210114 lncRNA upstream 9481 75984050 ~ 75984401 (+) True G185228
TU210097 lncRNA upstream 137025 75856129 ~ 75856857 (+) True G185211
TU210090 lncRNA upstream 148307 75843761 ~ 75845575 (+) False G185205
TU210091 lncRNA upstream 149815 75843761 ~ 75844067 (+) True G185205
TU210088 lncRNA upstream 150481 75842846 ~ 75843401 (+) True G185204
TU210222 lncRNA downstream 50980 76104123 ~ 76104424 (+) True G185326
TU210252 lncRNA downstream 97392 76150535 ~ 76150879 (+) True G185352
TU210272 lncRNA downstream 134432 76187575 ~ 76187870 (+) True G185367
TU210281 lncRNA downstream 150113 76203256 ~ 76204036 (+) True G185376
TU210344 lncRNA downstream 247192 76300335 ~ 76300615 (+) True G185424
XM_036955699.1 mRNA upstream 11276 75939769 ~ 75982606 (+) False LOC110496319
XM_036955696.1 mRNA upstream 11276 75939770 ~ 75982606 (+) False LOC110496319
XM_036955700.1 mRNA upstream 11276 75957612 ~ 75982606 (+) True LOC110496319
XM_021572140.2 mRNA upstream 57885 75915637 ~ 75935997 (+) True LOC110496313
XM_021572113.2 mRNA upstream 91840 75894357 ~ 75902042 (+) True LOC110496295
XM_021572340.2 mRNA downstream 839 76053982 ~ 76066679 (+) True lmf2a
XM_021572387.2 mRNA downstream 114430 76167573 ~ 76181555 (+) False LOC110496459
XM_036955859.1 mRNA downstream 213260 76266403 ~ 76272163 (+) True LOC110496485
XM_036955869.1 mRNA downstream 220369 76273512 ~ 76293411 (+) False cd9a
XM_036955873.1 mRNA downstream 223259 76276402 ~ 76293411 (+) True cd9a
TU209106 other upstream 906475 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 952792 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 1107382 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 1279768 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 1458856 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 114514 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 114514 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 380674 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 481235 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 777270 76830413 ~ 76832500 (+) True G185718

Expression Profile