RNA id: XM_021572387.2


Basic Information

Item Value
RNA id XM_021572387.2
length 2692
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110496459
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76167573 ~ 76181555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCCATATTGACGCATTGCTTATGACGTTCCCACCCGGCTTGTTTATCTTCTCTCGTTTCCTTTCCTCGGCAGAAGGTATTTCTGTCTGTAgatgactaacgttagctagcattaTGGCCAACGTTGTGGATACCAAGCTATACGACATCCTCGGAGTTTCACCCTCCGCCTCAGAAAACGACCTAAAGAAGGCATACCGCAAATTGGCCAAAGAGTTTCACCCTGATAAGAACCCAGATGCAGGGGACAAGtTTAAAGAGATAAGTTTTGCGTATGAGGTGCTGACCAATCCAGAAAAGAAGGAGCTTTATGACCGCTATGGAGAGCAGGGGCTgcgggagggaggtggtggaggggctGGCATGGATGACATCTTCTCCCACATCTTTGGAGGGGGGCTGTTTGGCTTCATGGGGGGGCAGGGACGTGGAGGGGGAGGACGCAATGGAGGGCGCAGGAGAGGCGAGGACATGGTGCATCCCCTCAAAGTTTCACTGGAAGACCTCTACAATGGTAAAACAACCAAACTACAACTCAGCAAGAATGTCCTGTGTGCTTCCTGCAATGGTGCCGGGGGTAAGGCGGGGGCGGTGCAGAAGTGCGTGGCCTGCAGAGGGAGAGGCATGAGGATCATGATCAGGCAGCTGGCTCCTGGCATGGTCCAACAGATGCAGTCAGTCTGCACAGACTGCAACGGAGAGGGGGAGGTGATCAGTGAGAAGGACCGCTGTAAGAAGTGTGAGGGTCGTAAGGTGAACAAGGAGACCAAGCTGTTGGAGGTCCATGTTGATAAAGGCATGAGGCATGGCCAGAAAATAAGCTTCACTGGAGAGGCTGACCAAGCCCCAGGCACTGAGCCTGGAGACATCCTACTGGTCCTACAGGAGAAGGAGCATGAGGAGTTCCGTCGTGATGGCCATGACCTCCACATGACCCAGCGTATCGGCCTGGTGGAAGCTCTGTGTGGCTTTCAGTTGGCGGTCACACACCTCGATGGACGCCAGCTCGCTGTCAAATATCCCCCTGGCAAGGTCATAGACCCAGGTTGTATCCGGGTGGTGAAGGGTGAGGGTATGCCTCAGTACAGGAACCCATTTGAGAAAGGCGATCTGTTCATCAAGTTTGATGTCCTCTTCCCTGACAACAACTGGATCAGCCCTGAGAAACTCACCgagttGGAGGACCTGCTGCCTGCGCGTGCAGATGGACCAGTCATCTCGTCGGAGGCAGAGGAGGTTGACCTCCAGGActgtgaggtcagaggtcaggggtcagcggGGGCCAGAAGGGAGGCCTACAATGATAGCTCTGATGAGGAGGGGGGGCCGCACGGCCCAGGGGTACAGTGTGCCCACCAGTAGACTGAATACACACCCCGactaccctctctctccagtctgtgTGCCCATCTGTTGTGAGGGAAGGGCACCTCCTACTGCACCCTGCCCCAGGTCCCATCAGGACCCTCCATCCTCTTCATTCCACAATcagagtgtgtgggtgtggtcAGCAGGCTATGCTGGATGTGTGGTGGCCATTTGACATCCTAGGATTTTAGGCTCTACAGCTGTCTTTGGAAACGTCATTTGCGAACCTTGTGTATAAAATGAAAATATTGTCTTTAAAAATACATTCATTTATCTTCTTCAGTGTCGTAGTCTAGTCTGTCACATCAGCGCATGCTGAAAATACATTTAACACAGGCCTACCATAGCCCCTGGCCTACACGGCAGCCTGCTGAGCCACACAGGAAGTGATTGCATCACATTCTGTAAGCTCAAACTCCTCTCATCACTGAGTTACCTGAGGACTTCCTGGCTCAGATTTATCTCCACCAATCACATAGCTTGAATCTTTAGGCTTATTTACCTTTCAGTCAGAAAAAAATATTTCTTCTGCGTGAGGATTGTGTGCTTTTGCGCATCTGTGTGTGTGACCACAGAGCTTTTGTCTGAGTAGCATACTCTATTCCTCTTTCTAAACTCAGGCAAGgctctctgagggtgtgtgtgtgagatgctgGCTTCTCTACTCATAGCAGTATGTATTCTGTGTGTAGTGGCAGTGTGAGTGATGACCTCATGTTTATGCTCAATTTAAGATAAAAACATCTGAATTTGTTGAACTTGACCCACCTTGACCATGTCACCTTTTAACCCTCGACCCCAAACCTCTGTATTATACACAACTCTCCATGCCAGTAGAACTGTCACATGCCATCTCCAACGTCCATTCCCTTAGCTCTGTAAATACCAGCCACAATCCCATCCCCTGTGCACAGTTGCATCTCAGTACTCTTCAGCTGCCTCCTCCCTTCCAATCCAAATTCCTGTCCTTCATCTGCACTAATGGGACAAAACAGCAGGGTCATGTTTAGTTGGcacaaattagatttttttttgatCACAACCTAAAAAAACACTAATTTCCAGTTTCAAAATATTTAGCTAGTCTGCCCTATTTCCTTTTCCTGTCCAGTTCTGTGAGATCAGTGCAGATGGAGAGGATAGGAGGCTGCTTTAGACTGTAGAGATGTAGTCATGTGACTGTCACTGTAAATATGAAATGGGCCACTGAAGGGACACACTTCAGACCAACAGACAGGCTTTATTTAGTAAGTGATATTATTGTTGATGCTCATGTTTGTCAGGATGACAATTGAACTGTATAATAAACTCTGTCACCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210252 lncRNA upstream 16694 76150535 ~ 76150879 (+) True G185352
TU210222 lncRNA upstream 63149 76104123 ~ 76104424 (+) True G185326
TU210114 lncRNA upstream 183172 75984050 ~ 75984401 (+) True G185228
TU210097 lncRNA upstream 310716 75856129 ~ 75856857 (+) True G185211
TU210090 lncRNA upstream 321998 75843761 ~ 75845575 (+) False G185205
TU210272 lncRNA downstream 6020 76187575 ~ 76187870 (+) True G185367
TU210281 lncRNA downstream 21701 76203256 ~ 76204036 (+) True G185376
TU210344 lncRNA downstream 118780 76300335 ~ 76300615 (+) True G185424
TU210356 lncRNA downstream 127399 76308954 ~ 76310593 (+) True G185431
TU210380 lncRNA downstream 162437 76343992 ~ 76344405 (+) True G185450
XM_021572340.2 mRNA upstream 100894 76053982 ~ 76066679 (+) True lmf2a
XM_021572329.2 mRNA upstream 114430 75993882 ~ 76053143 (+) False c2cd5
XM_036955859.1 mRNA downstream 84848 76266403 ~ 76272163 (+) True LOC110496485
XM_036955869.1 mRNA downstream 91957 76273512 ~ 76293411 (+) False cd9a
XM_036955873.1 mRNA downstream 94847 76276402 ~ 76293411 (+) True cd9a
XM_021572486.2 mRNA downstream 207974 76389529 ~ 76398538 (+) False LOC110496527
XM_021572492.2 mRNA downstream 207997 76389552 ~ 76398538 (+) True LOC110496527
TU209106 other upstream 1080166 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 1126483 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 1281073 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 1453459 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 1632547 74529649 ~ 74535026 (+) True G183361
TU210392 other downstream 252262 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 352823 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 648858 76830413 ~ 76832500 (+) True G185718
TU210667 other downstream 966098 77147653 ~ 77160850 (+) True LOC110502025
TU212151 other downstream 1595572 77777127 ~ 77780793 (+) True LOC110496763

Expression Profile