RNA id: XM_036955873.1


Basic Information

Item Value
RNA id XM_036955873.1
length 1885
RNA type mRNA
GC content 0.43
exon number 8
gene id cd9a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76273512 ~ 76293411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTCTGTCTATCGCTCTTTGCTCtctttatctcctctctctttgtctctctcactctctgtgagGCTGTCTAGGGAAATAGGAGAGAAGTGTTCtgctctgttacagacagagatcACGTTAGTAACATGGCAGTGTTCGGAGGGATCAGGTGTGTGAAGTACATCATGTTTATCTTCAACGTCTTCTTCTGGctTGCAGGTACAGGAGTGCTGGCtatagggttgtggttgaggtttGACCCAAAGACCAGAGGGCTGTTTGAAGGAGCAGAATCTCCCCATGTCTTCTTCACAGgtGTACATATCCTCATAATTGCAGGGTCATTAATGATGGTTGTTGGGTTCTTGGGATGCTGTGGAGCGATTCAGGAGTCACCGTGTATGCTGGGGCTGttcttcttcttcctcctcatcaTATTCGCCATCGAGGTCGCCGCTGGAATCTGGGGGTTCTCCAACCAAAGCAAGGTGGTTGATGACATCACTCAGTTCTACTTGGAGACATATCAGAACTACAAGAACACTTCACAGgacacactgagagagacactCCGTCTCATACAGACTGGGTTGGACTGCTGCGGACCAACAGGTTCCTTTGAGGACTTTGCCAAAGACACCTGTCCCCCAAGAGATGGGCTGGACAGCCTCATCACCAAGAGCTGTCCTGATGCTATAGATGAAGTGTTTGACTCCAAGCTGCACATCATAGGAGGAGTGGGCATCGCTATTGGAGTCATcttgGTGTTTGGGATGATCTTCAGCATGCTGCTCTGCTGTGCCATTAGGAAGTCACGGGAGATCGTCTGATGATGTTATCATTACCATGACGATGCCTTTTAATGTTGCATGATGTCATTCCTAGTCACATGACTTTTGTTTACTTGTTGAGAAAGGTCGGCCAATGAGTACTTTAGATCCCCTAACCTCTGTAACAAGGATCTGTACACCTGGTGATCCAGGGGTTTAGCCTGAGGACGGTGCTGCGCAGAATCACCCTGTATCCTAAACATCTACTCATGAAGTGATCTAGGTTAGCAAATATGTGCAGTTCCTTTCTCAGGCTGATCCTCTCTAACATGGAATCTGTCCAGTGCTAAGGTCGACACTCCTAAATCATCATGGTGATGTCACTGTTCACTGATTGGCCCTGTGAGAAACTGGTTCAGGAAGTGAAATAAACATAACACATTTGTGATTTATGATGAATTAAGAGATCTATGAATAGTAGTCTAGAGGTGTCATAAACAAATGTTTTTGTAATATGAACAGACTTTCAATTACCACAACTGCTCAATGATTTAAATTAAACTCTTGATGAAATAATGTCATGACAATGTAAGCAACATGTATTCTATTAATGATTGTAATAATATTGTATTGTGATCACATTTCTACCAAAATAACATCTGAAGGACCAGGGGCGGTCCTAAGACAACTCCCTATAGCAAAGCCACTCAATCTATACCATTCCTTAGCAAGAACCAATTAAATCAGCACATTGTGACAAGTTCCCAATGATATTGCAGGCTGTGGTCTGTGGTGAACGTGGTTCTAAGTGTTATAGAGGAGCAGCCTGGTCGCTCCAGTAGAGTACAAGAACCCCTCtttctcttgatctctctctctctccctctcacactctctctccgtactctctttctctacccaaTTTGAAAACGCCTTGAAGTCTCTGACTCTTTTTATAAAGTTGATTTTTATTTGTGACCAAGTTTTTGGTGAGTTGTAGTCAGTTTTACAGTATATTTAGATCTCTGTTAGATTACAGTGACTTTTATAACATCCATGCCATTTCACACTGGTCTGGTTGGTTGATGCACCAAAACAAATGAGCCAAATAAACTGTAACCTCTGAACCTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210281 lncRNA upstream 72366 76203256 ~ 76204036 (+) True G185376
TU210272 lncRNA upstream 88532 76187575 ~ 76187870 (+) True G185367
TU210252 lncRNA upstream 125523 76150535 ~ 76150879 (+) True G185352
TU210222 lncRNA upstream 171978 76104123 ~ 76104424 (+) True G185326
TU210114 lncRNA upstream 292001 75984050 ~ 75984401 (+) True G185228
TU210344 lncRNA downstream 6924 76300335 ~ 76300615 (+) True G185424
TU210356 lncRNA downstream 15543 76308954 ~ 76310593 (+) True G185431
TU210380 lncRNA downstream 50581 76343992 ~ 76344405 (+) True G185450
TU210387 lncRNA downstream 57618 76351029 ~ 76351362 (+) True G185457
TU210389 lncRNA downstream 59678 76353089 ~ 76353307 (+) True G185459
XM_036955859.1 mRNA upstream 4239 76266403 ~ 76272163 (+) True LOC110496485
XM_021572387.2 mRNA upstream 94847 76167573 ~ 76181555 (+) False LOC110496459
XM_021572340.2 mRNA upstream 209723 76053982 ~ 76066679 (+) True lmf2a
XM_021572304.2 mRNA upstream 223259 75993883 ~ 76053143 (+) False c2cd5
XM_021572486.2 mRNA downstream 96118 76389529 ~ 76398538 (+) False LOC110496527
XM_021572492.2 mRNA downstream 96141 76389552 ~ 76398538 (+) True LOC110496527
XM_036990350.1 mRNA downstream 238008 76531419 ~ 76537667 (+) False LOC100135907
NM_001124274.1 mRNA downstream 238684 76532095 ~ 76537667 (+) True LOC100135907
XM_021572558.2 mRNA downstream 245265 76538676 ~ 76674073 (+) False mapk8ip2
TU210196 other upstream 107107 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other upstream 107107 76167657 ~ 76169295 (+) True LOC110496459
TU209106 other upstream 1188995 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 1235312 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 1389902 74886098 ~ 74886500 (+) True LOC110496116
TU210392 other downstream 140406 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 240967 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 537002 76830413 ~ 76832500 (+) True G185718
TU210667 other downstream 854242 77147653 ~ 77160850 (+) True LOC110502025
TU212151 other downstream 1483716 77777127 ~ 77780793 (+) True LOC110496763

Expression Profile