RNA id: XM_021572542.2


Basic Information

Item Value
RNA id XM_021572542.2
length 3596
RNA type mRNA
GC content 0.44
exon number 12
gene id chkb
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76416202 ~ 76434654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTGTTGCTGACGACACACTAACGCTGGTCAAATTCAGCAGAAAACGAGGAAGCGGAGATATGAAGTACGGTATCTCTGGAGAAagtatctaacgggtggcatacAGTAATCTACCGAGGCGACATTACCACAATTATAAGAAAGAGCTAGAAACTAACAAGCCAAGTCAAACAGCGATGCAGTCGGGCCAAAATGTGATGGAGTGTCACAGCGAAGGGGCGCTTGGCAAATCTGACAAGACGGCGACTTTGAGATACATTCCCACTCTGAAGACGGGGGACACTGGTCCAACCGTGGATAATAAACATGTTGGGGACACCCTGGTCATCAATGAGAGCAACCTCAGGGCGCCGAGTCCCCGTGGAGCAAATGGTGATGACGACTCTGAAGCAGAGTCGTACCGGGATGGGCGGACAGAGGTGGTGGACATGGATATGAAAGGCAGAGCGTTCGCCTGGTGCCGAGACTTCCTTTCCGGGTCATGGAAAAGCATTCCCGAGGCAGATTTTCAGATCAGCATTGTCAGTGGTGGACTCAGCAACCTGCTGTTCATGTGCAGTCTGCCAGACCATGCCCACACTATTGGAGATGAACCTCGCAGGGTCTTGTTGCGAGTTTATGGGGCCATCCTACAGggagtggaTTCTCTGGTCTTGGAGAGTGTGATGTTTGCCATCCTGGCGGAGAGAGCCCTGGGGCCACGGCTCTATGGAATCTTCCCTGAGGGACGCCTGGAACAGTACCTGccgAGCAACCGCCTGCGTACAGAGCAGCTCTTTGTTCCGGAACTGTCCGCTGAGATTGCCTCAAAGATGGCCCGCTTCCATAGGATGGTCATGCCCTTTAACAAGGAACCCAAGTGGCTGTTCGGGACCATTGGCAGGTACATGGATCAGGTGATAAACTTAAAGTTTGCCCGGGAGGCTCACGTCAAGAAATACAACAAGCTGATTAAGTACGACCTCCCGGCAGAGCTGGAGAGTCTCCGagTATTGTTGTCAGCGACCCCATCTCCAGTGGTGTTCTGTCATAATGATGTGCAAGAAGGTAACATTTTGATGTTGGAGGACAGAGACCACACCTCCACTGGGAAACTCATGCTCATAGACTTTGAGTACAGCAGCTACAACTACAGggGTTTTGACTTTGGGAACCACTTCTGTGAGTGGTGCTATGACTACACATACAGCCAGTGGCCCTTCTACAAGTGTACACCTGACAACTACCCCAGCAGAGAACAACAGCTGCATTTCATCCGTAACTACCTGGTGGAGACGGGAGGCTATTCAGAGAGCACCATGCACGAGGACCAAGCTCGTATAGAGCAAGACTTGCTGGTCGAAGCCAATCGATTCGCCATGGCATCTCACTTCCTCTGGGGCCTGTGGTCTATCATTCAAGCCAGGATATCCAAGATCGAGTTTGGCTACATGGACTATGCCCAGTCACGATTTGATGCCTACTTCAAGCAGAAAAAGTTATTTTCCTAAATCGCTAAAAGAACAGATTGACTTCAATGGAATGTACTGTCATTTTTATATCTGCTGATTCTTCCTGTACGCAACTGTCCTGATGCAGAAACGTAGTTAGCTAGGCATATCTGTTAAGTGTTGAAACCAAACCAAATATGAGGGGTAAACGCCCACTGAAGAGTCTTGGGTGGATTTTTACAAAATGATCTATTGTTTGAACTTGATGTTTCTAATATACCAGGACCCCATCCATCTAGTAGCATCCAATACGTTGCTCTGACTGAGACAAGTAACAGTGAAGCAGGGACTCAGCTGCACTCCAACAAAATGCACTTATCTTCCCCTACTATGAAATGTGAAATTCTGTGAAAATGCACAGCAAAAAAAAGCATGTTATTTGTTTACATTAGTTATGATCTACTGGTTCCATACATTTTATGTTTCAAACCCTGTAGTCATGTGCTTTATTTTAGTCATTCAACTCTGCTTCTTTCTTTACCCCACCTCGTAATGTAATTGTTGAACTTCAGAACACCCTTGATTTCAGGGTCGAAATATGCTCATTTTGTGCCGTCTTTTTTCTTTTTCCTTGACTTGTTTGTTAAATGCCTGTTCTATGCATGGACACAGTACAGCATGGCAGAGAATCAAGCTGCATAGCACAACTCTGTTCATACTGTAGTTCTGTTTCTTTGTAGTGCAGTAGGGAAATCTGGACTCTTGGCCCTATTAATTCAGAACTAGTAAGAAAAGAACATGCTCCATTGCATAGTAAGTCAAATATGTTCTTAAACAGGATGTTGTTTTTGACCTTTCTCCATGACTGGTTCTGATTGAATTGGGCTTAAAACCCATGTATGACCTGTCTGTTTTAGCATTTTCTCTAGTCAAACTATATATAGAGGGGTTGCAGTTGTCAGAAATCACTTAGCAATCATGCCAGGCGCCATGTTGGAAGACCAGTCACTGTGGTGGAAGAATAGTGCAGCATGCTAGCTGTTTGTGAGCATGCACACTGCATTGCACTGCCAATTGTTTCTTAGCAAGGCAATTTGTTTTCTCAGCTACAATGTCTTGGCTCCCAATTACGGCACAGAAATTGACCATGGTGATGAACTAAGTGGGTTTAGGCACTGTTATCATTCAGCGTGGGGTTGCCACTCAGTTGTCAGAAGAATTGATGCggtggtcttccaacatggcTGCCAGGAGGTGTCGCATTTCACCTCCTGGCACAAGTGTTTTGTGTCATTCTACCTCTTCACAACAATGAGGGTCATTTTACACTTTGAATGATAAATTAGCAAATGTAGACCTGAAACTAAATGattaaaaaattattatttttttggttATAGACAATAACAGCTTATTGCACAACCTCTCAGAAGAGAGCAGtttatgaaaatatatatatatatagcttttGTCTGGCTTTGATGTCATTGCATTCTGACTAGGTTTACCATTCATTCTAAAGCTGTTCCATTACTAGTAAACTGGTATAGAACTGTCTGTCACGGTTTGACTCTGCCCAAGGTTTGGATGTTTTGTCCTTTTCCATTTCTGACCAAGAACCACAATGGTTAAAGAAAGCTGTCCATGACTTTCAACAACAGATGTTGTATCTTATTTAAATGTGCATTTGGCTCCTGTGCGTGTCTGCCTGCCTAACATTATTAAAACCAAATGGAATATCTGCATGCTTTTGGAATTCAGATCCAAAGATTTTGAAAATGGGATcatggttgtttttttttttctccaatggcAATCATTTGAACACATGGAAATGTTTTTCAGTATAATTTGTTATTTATTTGCCCAGTGAAGTGCTCTTTGTTTTGATGTGAGTTCTAATAAAGGTGGACCTGTGAGGTTACCCTTTTGTATAATGTTAGAATATATGTTGTGGATGTAGGCCAATGTTCGATTTCCGAGAATATGAAGCTGCCTAGTCTAGAAGCCAGTGTCTCGTCAACTAGCTAAATTAAGTAACTTTCTTTTCATTGCACATCAATCCTGTCCAAAACCCTTTGGTGTTATTGATATTCTCCCTGCAATGCAGCTGCTGTGTAAGTATAACTGAACTGCAAATAAACATGCTTGATACCTGATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211218 lncRNA downstream 18582 76389468 ~ 76397620 (-) True G186198
TU211264 lncRNA downstream 64498 76351489 ~ 76351704 (-) True G186241
TU211263 lncRNA downstream 66441 76349466 ~ 76349761 (-) True G186240
TU211260 lncRNA downstream 70445 76345430 ~ 76345757 (-) True G186237
TU211258 lncRNA downstream 71971 76344021 ~ 76344231 (-) True G186235
TU211302 lncRNA upstream 16877 76451531 ~ 76451733 (-) True G186277
TU211331 lncRNA upstream 83193 76517847 ~ 76518254 (-) True G186306
TU211334 lncRNA upstream 87191 76521845 ~ 76522089 (-) True G186309
TU211394 lncRNA upstream 173990 76608644 ~ 76657511 (-) True G186353
TU211541 lncRNA upstream 389824 76824478 ~ 76825291 (-) True G186491
NM_001171855.1 mRNA downstream 5487 76400220 ~ 76410715 (-) True LOC100329197
XM_021572474.2 mRNA downstream 36374 76365671 ~ 76379828 (-) True prpf18
XM_021572465.2 mRNA downstream 36383 76365671 ~ 76379819 (-) False prpf18
XM_021572453.2 mRNA downstream 74368 76321757 ~ 76341834 (-) False si:dkey-234i14.6
XM_021572399.2 mRNA downstream 203283 76209339 ~ 76212919 (-) True LOC110496468
XM_036955908.1 mRNA upstream 23069 76457723 ~ 76516834 (-) True LOC110502016
XM_021572601.2 mRNA upstream 130245 76564899 ~ 76570311 (-) True LOC110496606
XM_021572613.2 mRNA upstream 150128 76584782 ~ 76590246 (-) True LOC110496614
XM_021572587.2 mRNA upstream 167397 76602051 ~ 76608058 (-) True LOC110496598
XM_021572625.2 mRNA upstream 241400 76676054 ~ 76690444 (-) True arsa
TU211248 other downstream 92312 76321807 ~ 76323890 (-) True si:dkey-234i14.6
TU211216 other downstream 122810 76273524 ~ 76293392 (-) False G186197
TU211217 other downstream 122810 76274974 ~ 76293392 (-) True G186197
TU211125 other downstream 316352 76093170 ~ 76099850 (-) True adm2b
TU211053 other downstream 426629 75985159 ~ 75989573 (-) True tnni1c
TU211715 other upstream 735309 77169963 ~ 77171639 (-) True LOC110496628
TU212651 other upstream 1035739 77470393 ~ 77471097 (-) False G187490
TU212754 other upstream 1268245 77702899 ~ 77703489 (-) True G187579
TU213521 other upstream 2181928 78616582 ~ 78617307 (-) True G188257
TU214411 other upstream 2788576 79223230 ~ 79224998 (-) True G189093

Expression Profile