RNA id: NM_001124274.1


Basic Information

Item Value
RNA id NM_001124274.1
length 1397
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC100135907
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76531419 ~ 76537667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAATTCTTATTGTGAAGCCATGGCGATGAAGTGGAGTGTAGTTTGTCTCGTGGCAGTGGCCATGCttggctgtctgtgtgttgctCAGAATTGGCCACCCTTCAGTAAACCAGTGCAGCAACCCTTCAGACCCAATCGTCAGCCACCTCAGCAGCCTCAGCAGCCTCAGCAACCACCGTATCAGAAACCCAGGATCCCACCAAAAGACCAAACCCAGGCCAAGCAGAAGTTCGAGACACCATTGGATTGGACCTATCCTCTGGACCCAAAGCCAGAGCCCAAGATTATTGGGAGCTCAGAGGCGAGAACCCCTGTGGCTGCCAATTCAGTGAGGGCTGAGTGCAGGGAGAACATGGTCCACGTGGAAGCGAAGCATGACCTGCTGGGGATCGGCCAGTTGATCCAGCTAGAAGACCTCACTTTGGGAGACTGCCCTATGACTGGATTTGACAATATCAACCAGGTGCTCATCTTTGAGTCTCCGCTGCAGTCATGTGGCAGCCAGCTAAGGATGACTACCAACTCCCTCATCTACATCTTCACTCTATATTACAAACCCAAACCTCTGGCAAACACCCCCCTCATCAGGACAAATGACGCGATGATCAATATTGAGTGCCACTATCCAAGgaaACACAATGTGAGCAGCCTGGCCCTGATCCCAACCTGGACCCCTTTCTCCGCTGCTAAGTATGCAGAGGAACTCCTGTACTTCTCCATGAGGCTCATGACTGCTGACTGGCAGTATGAGAGGGCCGGTAACATGTACGTGTTGGGTGATATGGTGAACATCGAGGCCTCTGTCATGCAGTACTTCCACGTCCCCCTGCGTATCTTTGTGGACAGCTGTGTGGCCACCCTGGAACCCAACATAAACGCCAATCCCAGATACGCCTTCATTGAGAATCATGGGTGTCTGATCGACGCCAAAATGACAGGTTCCCACTCCCAGTTCATGCCTCGTTCCGCAGACTACAAGCTGTATTTCCAGGTGGAGGCTTTCAGGTTCCAGAGCCAGAAGGGGAGTGACCCAATTAATCCGCAGAAAACAAAGATACCTTTTCAGGCTGCTTCAGATTATCCCGCTACGCTCGACATGATCTTCATTACCTGTCACCTGAAGGCAACCACAATCGCTTTCCCCATTGATTTTGAGTACAAGGCCTGCTCCTACATTAATACGTGGAGGGAGGCTGGTGGGAATGATGGAGTGTGTGGCTGCTGTGACTCCACCTGTAGCAACAGGAAGGGACGCGATACCACTAAGCATCAAAAACCAGCAAATATATGGGAGGGAGATGTTCAGCTTGGTCCCATCTTTATCTCGGAAAAGGTTGCGCAATAAATTCAGACCCTGCCATTGGCATGCCCATTGAAATAAACAAGTTGATGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210391 lncRNA upstream 113741 76416215 ~ 76418354 (+) True G185461
TU210393 lncRNA upstream 131330 76354349 ~ 76400765 (+) True G185463
TU210389 lncRNA upstream 178788 76353089 ~ 76353307 (+) True G185459
TU210387 lncRNA upstream 180733 76351029 ~ 76351362 (+) True G185457
TU210380 lncRNA upstream 187690 76343992 ~ 76344405 (+) True G185450
TU210498 lncRNA downstream 136239 76673906 ~ 76714965 (+) False mapk8ip2
TU210502 lncRNA downstream 136239 76673906 ~ 76714965 (+) False mapk8ip2
TU210496 lncRNA downstream 136937 76674604 ~ 76676611 (+) False mapk8ip2
TU210501 lncRNA downstream 136937 76674604 ~ 76677734 (+) False mapk8ip2
TU210503 lncRNA downstream 136937 76674604 ~ 76677734 (+) True mapk8ip2
XM_021572486.2 mRNA upstream 133557 76389529 ~ 76398538 (+) False LOC110496527
XM_021572492.2 mRNA upstream 133557 76389552 ~ 76398538 (+) True LOC110496527
XM_036955869.1 mRNA upstream 238684 76273512 ~ 76293411 (+) False cd9a
XM_036955873.1 mRNA upstream 238684 76276402 ~ 76293411 (+) True cd9a
XM_036955859.1 mRNA upstream 259932 76266403 ~ 76272163 (+) True LOC110496485
XM_021572558.2 mRNA downstream 1009 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572567.2 mRNA downstream 1009 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572576.2 mRNA downstream 1009 76538676 ~ 76674073 (+) False mapk8ip2
XM_036955942.1 mRNA downstream 325782 76863449 ~ 77159844 (+) False LOC110502025
XM_036955945.1 mRNA downstream 417891 76955558 ~ 77159844 (+) False LOC110502025
TU210392 other upstream 97480 76433817 ~ 76434615 (+) True G185462
TU210196 other upstream 362800 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other upstream 362800 76167657 ~ 76169295 (+) True LOC110496459
TU209106 other upstream 1444688 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 1491005 75037252 ~ 75041090 (+) False LOC110496136
TU210702 other downstream 292746 76830413 ~ 76832500 (+) True G185718
TU210667 other downstream 609986 77147653 ~ 77160850 (+) True LOC110502025
TU212151 other downstream 1239460 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 1510220 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 1510220 78047887 ~ 78048800 (+) False LOC110502077

Expression Profile