RNA id: XM_021572558.2


Basic Information

Item Value
RNA id XM_021572558.2
length 5123
RNA type mRNA
GC content 0.52
exon number 15
gene id mapk8ip2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76538676 ~ 76714965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACCTCCGCTTCGTGTCACAGGCATCATCACAGCGGCAGACATTTGGCAAGGCAGTCAGCAGACTGCGGGTGTGTGGCTGTTCTGGCTGCATCgggaaaatagttttttttcgtGTGATTACCGCAGTGTTGTTCTTTTTCTCTGCCGTTTCCGGGCTGTAGAGTGGATAGCAGCTCAAGGCAAATGTGATGGTGATGCTGAGTACGCGTATCTGATTTGACTAGATCGAGGCCAGGGGGATCTGTAACAGCGTGGCGTCACTTTGAGCCGTTTTTGGAGGAAGATGGCGGACAGGGCTGAGATGTTTTCCCTCTCCACCTTCCACTCCCTCACTCCTCCAGGCTGCAGACCTTCCCATGACATTAGTCTCGAGGAGTTTGATGATGAGGATCTGTCTGAAATCACAGACGACTGTGGAATAGGACTCAACTATGACTCTGATCCCTATGAAAAGgACTGTCTGATTCTGGAGAAGAGCGATATGCACCACCCGGTCTGCTCCTTCCAGGACGACTTCCAGGAGTTTGAGATGATCGATgacgaggatgaggaggatgaggaagaggaagatgaagacGAGGTGGATCCTGACGCTCCTCCCTCCCCCACCGCTTCCCCTCCTTCTTCCCCCACCCTTGGCACGCTGAAGAGCCGGCCCACTACCCTCAACCTCACCACCGCTGTCTCACAggactcACTGAACAACAACAGCAGTCTTTCTCCAAAGAAGGGCAGCTGGCAGGACTCTCTACGCAACCCTACCTCACAGGGCCGTCTGTCTCCAACCCACTCTTGTCTGGAGGATGGGAGTCACGTGATGGGCCAATGCCCTTCCCAACCAGCCCCCCAGGCCCCAGGGTCCCAGAGCAAAGGTACTCCCCCCAAACAGGCAGGGGAGGGCGCCTACCCCCAGTCCCCTCGCAGGCCCCTCCTTTGCGACATGGAAGGCAACAGACGGGAGAGGCCTGAATACGGCTCCTTCGGTCAACACAAGTCTCACCCGGGCTCTAATGAGGTCATTAACTCCTCAGCTGACCCTCTGATCTTCAGAGTTACATCCCTGGATGACCAATCCCAATGCTCTGACACTGAGGTTGACCACGACCTCAACAGcgctgaccacaaccacaaacTTTCACGGTCCTGCACGTCCACCCAGCGACGTGCTACCGACACCTACACGGTCACCACTGAGTCAGGCCTAGACCCGGAACTGGAGAACGATCCAGATGGGACCAGCCGATGCCTGTCCTCCACTGCTCCCATTGGGGGGAATGACGGAGCTGACACCCCTCTGTCAGATGAGGAGCTGGAGAAAGATTTTGACGTAGAGTTTATGTGTAAGGAGACTTATGACATGGTGTGTAAGGAGAACCAGAGCTCAGTCTATGTTGAGTTCCCCTCCATCGAGCCCTCTGAGCTGGCTTCCTTCTCCAGCTACATGTCATCAAGCCGCTCTGATGTTCTCGACCAATCCCGAAGCACTAATCAGAGCCAGCATCCAGGTGCAGCTATTGAGGTGGCCAATGACTCCAACTCTCCATCCTCGGACCCGGGCATTGCTGACATGAACGCTAAGCGGTGCTACACCACCTCAGACCAAGACCAGGACCTGAGCTCTCCCGGGTCAGACTCAGACATCGAAGGGGAGCTTGAGGCAGCATTCGCCTGCGGAGGACCCCTGGTCTCCAACATGATCTCTTCCATCTCAGAGACAGAGCTGGACCTGACTAGTgatgacagtagtagtggacGCTCCTCCCACCTCACCAACTCCATCGAGGAGGCCAGTTCACCCACCTCCGACCAGGAACTGGACCCGGACACCGAGTTAGAACAGGACAGTGGAATTGTGGGAATGAAGGTATCACTCCTCCTTGGCCAGCCAGACCCCATCAAAGAGGACTCACCCTTACCCTCACCTTCACAACTTTTCTCCTCAACCCTGGCCACCCCCTCCCCTGCTGACTCCCTCGTCCTACCTCCTGAGCCCTATGATGACGGCCAGGCTCTGATGGGCCTACAAAgtgtagatgatgatgatgataatgacctGCCCTATGAGCACCAGGCCGACCCAGATGAGACCCTGCCCCCAGCCCAGCACTGTGAGGACAGCATGTCCAGACAGATGGTCCTCCAGATAGAACCAGACCACAGCCTGGAGAGCTTCAAACGCTCCTTCTACCTGCCAGTAGGACCAAGACTCATACCCACCCATGCTGACGACTACGATGGGAACAGTGAGGGAGGGTCTGAGTCGGAGAGCGAGGATGAGCTGAGTGAGAATTCAGACTCACCTTGGTTGCTAAGCAACCTGGTGAACAAGATGATCTCGGAGGGGTCTTATCCAATCAGCTGTCCTGAGGACTGTTTCAAGAGGTCAGTGTCCATCTCGGACACCATCTCACCCTCCTCGGACATCGAGCCAGACGCGTTCACCGAAGCCACGGACGAACAAATGCAGAAAACTGGGACGAAGAGATCGGAGGAGGAGGATAAAGAAGGGACGGGCCtgaggaaggaagggaaggatAGAGATAAGAGGGAGAAGAGTGCAGAGCCACCCAAAGGGAATGCAGGGAAAGCAAACAAAAGATTCGGCTCCTGTCTGTACATGAACAATCCTACAGCTGACACCATCAGACCGGTGATCGTGGAGCGCTATGGCAACAGGATATCcacagacaacaaccacactCAGGATTCTGAGAAAGACACCAGCCCTAAATCTGGCAAAAACACCAAGAAGAAGGATGAGGAAATGGATGTTATTGTGGAGCCTGATAACGACCTGATGATGCTGGAGGGGAGGAAGGAACTGGACTCTCCCAGTCTGAGTGACAGCGTAGCGAGTGACAAGGACGAAGGCCGCGAGATGGAGGCCAAGCCCACCGGACGCTCTACGGCCTCCCTGGAACGCATCACCACGGTCAAACACAGCATGACGCTGGACATCCCCACTGCCCAGACCAACCGATGCTTCAGCCTCACCTACtccaccgacaacgatgaggaagaggaggaggaagaggaaggagactGCTCCCCGTTCCTGAGCTGCCTGAGGAAGCAGTCATCCTATCGTGGCAGCAATCAATATCTGGACAGCTCACCGCCTATCGATGAGAGCGTCCGGGACCTCCCCCTGTCAAAGCAGGACCCCACCCTGTGTGTGAGGGACCTCCCCCTGCAGGCCCTGCGGTCCAGGCCAGATGATGATGGTCTGGCGTACGACTCCATGAAGTACACTCTGGTGGTGGATGAGAACACTACACTGGAGCTGGTCAGCCTCAGGCGATGTACCTCAGTGCTGAGTGACGACAGTGAGCTGTCTACACTGTGTGATGATGACCCTCTGGGGACGGGGGAGGTGGGAAACGGCCAGGGGAATGGAGGGGTGCGGCCAGAACTCCTCAGCTCCTCAGAAGACTCCTCCCCTGAGGCTGACATGCATTTCTCCAAGAAGTTCCTCAATGTGTTTGTCAACAGCACCTCTCGATCCTCCAGCACAGAGTCGTTTGGGCTGTTCTCCTGTACCATCAATGGAGAAGAGCGGGACCAGACACACAGGGCTGTCTACAGGTTTATCCCCAGACATGTGGATGAGTTGGAGCTGGATGTGGACGACCCTCTATATgtcgaggaagaggaggatgactactggtacagaggctacaacatgcggacgggagagagggggatattcCCAGCCTTCTACGCCCATGAGGTCATAGGGCAGTCCAAGGAGATAATGGGAATGAAGAGGAACCCAGCCTGGATGGAcagtttcagtgttcagttcctgGGTTCTGTGGAGGTGCCCTATCACCAAGGCAATGGCATCCTCTGTGCTGCCATGCAAAAGATTGCGATAGCGAGGAAGCGGACGGTCCATTTGCGGCCCCCCTCTCTGTGTGAGCTGGAGATCAGTCTACAAGGGGTTAAACTGGTGATGAGCCTGGAGGATGAATACGACACTATGGATGAGtttgACAGATGTAGTCACTTCTTCCAGATGAAGAACATCTCTTTCTGTGGATGCCACCCCAAAAACAATTGcTACTTTGGCTTCATCACTAAGCACCCCATGCTGAACAGGTTTGCCTGCCACGTCTTCGTCTCCCAGGAGTCAATGCGGCGTGTGGCCGAGAGTGTTGGacGGGCTTTCCAGGAGTATTACCAGGAGCACCTGGAGTATGCCTGCCCCACCGAAGACATCTACCTGGAGTAGAGTAGGCAGGAAGCAGGAAATGTTGCCATGACAAcagtcttctcttcttcttcctgCTGCTGCTTGTATGTTTATCAATTTCAATCACCAGAGGATGCTGGTGGGTCTTCTCTCCATTGCAAAAAAtacccctatatctctctctgaaACTGAAATGTTCATTTCAGTTCTACAGTATGCTATGTGTTTTATTTATTGattcatttgtttgtttattttcccTCTTCTAGATGGATTGCCTGTTTATTTGACCTTTTGTTTTCTATGATAGTTATAGGAATAAGGGTCTTGGCACCTGTTATTTTAGATATGACGTATTATATTCCTACTACTGCTATTTCACATGTTCGAATGCATGGTTAGGAGGGTAATGCACACACAGAGCTATTAGGACACAAAACCAGCTCAACATTGAATAGGACCTGGATCATATTGTTTGGtgtaaatatacactaccgttcaaaagcttggggtcacttgtttttaaaagaaaataacttttttttgtccattaaaataacaccaaattgatcagaaatacagtgtagacattgttaaagttgtaaattactattgtagctggaaactgagtATTTTTTGTATGgaatctacataggtgtacagcgGCCCATTAACAGCAACCATCACTACTGTGTTCCaaaggcatgttgtgttagctaatccaagtttatcattttataaGGCTAATTGatgattagaaaacccttttgcaataatGTTAGCACATTTCCAGCTGAAAactgcctaaaaggccagcatcccggagtcacctcttcactgttgacattgagactggtgttttgcgggtactatttagtgaagctgccagttgaggacttgtgaggcgtctgtttctcaaactagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210391 lncRNA upstream 120322 76416215 ~ 76418354 (+) True G185461
TU210393 lncRNA upstream 137911 76354349 ~ 76400765 (+) True G185463
TU210389 lncRNA upstream 185369 76353089 ~ 76353307 (+) True G185459
TU210387 lncRNA upstream 187314 76351029 ~ 76351362 (+) True G185457
TU210380 lncRNA upstream 194271 76343992 ~ 76344405 (+) True G185450
TU210496 lncRNA downstream 531 76674604 ~ 76676611 (+) False mapk8ip2
TU210501 lncRNA downstream 531 76674604 ~ 76677734 (+) False mapk8ip2
TU210503 lncRNA downstream 531 76674604 ~ 76677734 (+) True mapk8ip2
TU210585 lncRNA downstream 6535 76680608 ~ 76681061 (+) True G185624
TU210699 lncRNA downstream 154076 76828149 ~ 76833657 (+) False G185717
XM_036990350.1 mRNA upstream 1009 76531419 ~ 76537667 (+) False LOC100135907
NM_001124274.1 mRNA upstream 1009 76532095 ~ 76537667 (+) True LOC100135907
XM_021572486.2 mRNA upstream 140138 76389529 ~ 76398538 (+) False LOC110496527
XM_021572492.2 mRNA upstream 140138 76389552 ~ 76398538 (+) True LOC110496527
XM_036955869.1 mRNA upstream 245265 76273512 ~ 76293411 (+) False cd9a
XM_036955942.1 mRNA downstream 189376 76863449 ~ 77159844 (+) False LOC110502025
XM_036955945.1 mRNA downstream 281485 76955558 ~ 77159844 (+) False LOC110502025
XM_036955949.1 mRNA downstream 297567 76971640 ~ 77159844 (+) False LOC110502025
XM_021572682.2 mRNA downstream 621014 77295087 ~ 77306466 (+) False LOC110496661
XM_021572750.2 mRNA downstream 1023153 77697226 ~ 77716788 (+) False nfat5a
TU210392 other upstream 104061 76433817 ~ 76434615 (+) True G185462
TU210196 other upstream 369381 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other upstream 369381 76167657 ~ 76169295 (+) True LOC110496459
TU209106 other upstream 1451269 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 1497586 75037252 ~ 75041090 (+) False LOC110496136
TU210702 other downstream 156340 76830413 ~ 76832500 (+) True G185718
TU210667 other downstream 473580 77147653 ~ 77160850 (+) True LOC110502025
TU212151 other downstream 1103054 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 1373814 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 1373814 78047887 ~ 78048800 (+) False LOC110502077

Expression Profile