RNA id: TU210498


Basic Information

Item Value
RNA id TU210498
length 2541
lncRNA type read_through
GC content 0.40
exon number 2
gene id mapk8ip2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76538676 ~ 76714965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaacccttttgcaataatGTTAGCACATTTCCAGCTGAAAactgcctaaaaggccagcatcccggagtcacctcttcactgttgacattgagactggtgttttgcgggtactatttagtgaagctgccagttgaggacttgtgaggcgtctgtttctcaaactagacacactaatgtacttgtcctcttgctcaagtgtgcaccggggcctcccactcctctttaaattctggttagagccagtttgcgctgttctgtgaaaggagtagtactcagcgttgtacgagatcttcagtttcttggtaatttgtCCCATGGAATAGCCTCCATTtctcagaagaaagttctttgtttatggctattttgagcctgtaatcgaacccacaaatgctgatgctacagatactcaactagtttaaagccagttttattgcttctttaatcaggacaacagttttcagctgtgctaacataattgcaaaagggttttctaatgatcaattagccttttaaaatgataaacttggattagttaattagtgccattggaacataggagtgatggttgctgaaaatgggcctctgtacataTTCCATAagaaaatcagctgtttccagctacaatagtcatttataacattaacaatgtctatactgtatttctgatcaatttgatatttttatggaaaaaaaagtcttctttcaaaaatgtctaagtgaccccaaacttttgaacggtagtgtatatttgttCAATATCGACAAACTGCTTTTCGACTGGTAGTGAGATTGAAGCGAAGTAGAGCAGTTATCTGACTTGGTCCGAGGTAACCCCTGTACCGTATGAGACATTGTGTTCTGTAAATATATGTATAGGCAGTAGAGAAATACAGACACCTCATGCATCCACAACCAATAATCAAACAGGAGGAAGACGTTTTAGCCCAGTGTTTATCAAACAGTGGGTCGGGAACCAGAGAACTTATCCTTTAACTGGTTTGTTCTGTGGCTTATGCCTGGTTACATTTCTCTTCTgtagtcccttcccctagcttATTTGATGTCCACCATTTTGAAATTTGTTGGCGTCAGATCAGAAAGAACAGTTGCAATAGTCATCTCTCATTGGAAAACAACTCCTCTCATCAAATCTCCAGCGGGGTGTCAGGAAGAGGTTGCTATGGAAACTGGGGTGATAACTGTCAGCACTTTGGGAACAGAGCGAGAAGAAAAAATGATTTAGCTTCTGGACTTCTAATGGTGTAAATACAATAATATCATATTCCTTTCCAACAGTGAAGTGTCCTGATGTACTACACCATGTTTAGAGATCATCAATCAATATCAGGTCGAGGACAGGAGAAGCCATAATTCAACACTACTCCCTCACAGGAAACACTATTGTACATGTGTGTCGGTCTGTTTAAGTTGATGAGTACACTGAGAATAAGGCCACAGATAATGCTTAGAATTGAGTGGTGTATTCTTCTCGTGTCCCTCCACCTTCTCTTTGAGGTGGATCAGGGTAGAGTTTAAGttaaactttatttttttctatttggTCTGAGCAGTACAGTTTTAGAAGTTGATTTTACAATGTCTAATGGCTCATATTCTGCTTAAGAAATGACCCTTCCAAATGTACTCCTTGATTTTCCTCTGGTCATAGGTAaaccaatatacagtacatggtttGCTTACTTATAGTAGGACATTATACTTTTTAGTTGTCTTTTTCCAGTTCAATTAGCATACTGTAGACTACAGTGCAACATCAAACAGATGGGAGTATAGAGAagtggagaacacagaatgaattGAAATAACAGGCATCCTACTGCAATCCCCAATATCAGgttgagtacagtagtgtagacgAGGGGCTCGCTTCTAGACCCAGATACATCTACTGCTTTTATTCTTCAACAAATATTAAACAGCAAAAAAAAGGATAATGTAGTCAAGAGCGTCATGGGACCTCCATGGTGACCAGTTTATCATTAGTGACAGTGTGTATCGCTGTCAGTTAGATCCTGTAAATACTATAAAGAGTGGAAAAGATTGTGCTGTGTCCTTTACGTTATGTATGTTATTGAaattaaatatttaaaataaGAGAAATTCAAAAAAGATGACAAACATGAAAACCAATTTAAATTACCAGTTTTATTTGTGTGCTACGTCAACCACTAAGGTGACATTTTGGGTTCTTGCTAACTCAAACATTCACCCCACAGACAGGCTTTAGCAACACAGGGGACAAATGTAATGTGTCACCTTTGACCTTGCTGAGATCCAACACCCACCCAATTGCTGGCCAATCTGTTGATAGAGCAGAACCAATTAAAACAGCTTTCAGAGAGCCTGCTTTTATACAGGAACCTATCGCATCTTGCCAATATAGCCCATGGCTTTGAGCTCCAGACATGCTCCATCTCTTACCTGtaccaGTTTGTTTTTCTGACACCACTCTCCGAGTGCCCTCACGGCACCTATCTAACATGTACCAGTATGAGCCTGGATGTGATACCATATTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210391 lncRNA upstream 255552 76416215 ~ 76418354 (+) True G185461
TU210393 lncRNA upstream 273141 76354349 ~ 76400765 (+) True G185463
TU210389 lncRNA upstream 320599 76353089 ~ 76353307 (+) True G185459
TU210387 lncRNA upstream 322544 76351029 ~ 76351362 (+) True G185457
TU210380 lncRNA upstream 329501 76343992 ~ 76344405 (+) True G185450
TU210699 lncRNA downstream 113184 76828149 ~ 76833657 (+) False G185717
TU210701 lncRNA downstream 113184 76828149 ~ 76831474 (+) True G185717
TU210769 lncRNA downstream 212953 76927918 ~ 76932510 (+) True G185783
TU210665 lncRNA downstream 447050 77162015 ~ 77165608 (+) False G185695
TU210666 lncRNA downstream 447050 77162015 ~ 77165608 (+) True G185695
XM_036990350.1 mRNA upstream 136239 76531419 ~ 76537667 (+) False LOC100135907
NM_001124274.1 mRNA upstream 136239 76532095 ~ 76537667 (+) True LOC100135907
XM_021572486.2 mRNA upstream 275368 76389529 ~ 76398538 (+) False LOC110496527
XM_021572492.2 mRNA upstream 275368 76389552 ~ 76398538 (+) True LOC110496527
XM_036955869.1 mRNA upstream 380495 76273512 ~ 76293411 (+) False cd9a
XM_036955942.1 mRNA downstream 148484 76863449 ~ 77159844 (+) False LOC110502025
XM_036955945.1 mRNA downstream 240593 76955558 ~ 77159844 (+) False LOC110502025
XM_036955949.1 mRNA downstream 256675 76971640 ~ 77159844 (+) False LOC110502025
XM_021572682.2 mRNA downstream 580122 77295087 ~ 77306466 (+) False LOC110496661
XM_021572750.2 mRNA downstream 982261 77697226 ~ 77716788 (+) False nfat5a
TU210492 other upstream 66931 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 239291 76433817 ~ 76434615 (+) True G185462
TU210196 other upstream 504611 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other upstream 504611 76167657 ~ 76169295 (+) True LOC110496459
TU209106 other upstream 1586499 75086622 ~ 75087407 (+) False LOC110496136
TU210702 other downstream 115448 76830413 ~ 76832500 (+) True G185718
TU210667 other downstream 432688 77147653 ~ 77160850 (+) True LOC110502025
TU212151 other downstream 1062162 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 1332922 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 1332922 78047887 ~ 78048800 (+) False LOC110502077

Expression Profile