RNA id: TU210501


Basic Information

Item Value
RNA id TU210501
length 3073
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id mapk8ip2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76538676 ~ 76714965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctttcaaaaatgtctaagtgaccccaaacttttgaacggtagtgtatatttgttCAATATCGACAAACTGCTTTTCGACTGGTAGTGAGATTGAAGCGAAGTAGAGCAGTTATCTGACTTGGTCCGAGGTAACCCCTGTACCGTATGAGACATTGTGTTCTGTAAATATATGTATAGGCAGTAGAGAAATACAGACACCTCATGCATCCACAACCAATAATCAAACAGTGGGTCGGGAACCAGAGAACTTATCCTTTAACTGGTTTGTTCTGTGGCTTATGCCTGGTTACATTTCTCTTCTgtagtcccttcccctagcttATTTGATGTCCACCATTTTGAAATTTGTTGGCGTCAGATCAGAAAGAACAGTTGCAATAGTCATCTCTCATTGGAAAACAACTCCTCTCATCAAATCTCCAGCGGGGTGTCAGGAAGAGGTTGCTATGGAAACTGGGGTGATAACTGTCAGCACTTTGGGAACAGAGCGAGAAGAAAAAATGATTTAGCTTCTGGACTTCTAATGGTGTAAATACAATAATATCATATTCCTTTCCAACAGTGAAGTGTCCTGATGTACTACACCATGTTTAGAGATCATCAATCAATATCAGGTCGAGGACAGGAGAAGCCATAATTCAACACTACTCCCTCACAGGAAACACTATTGTACATGTGTGTCGGTCTGTTTAAGTTGATGAGTACACTGAGAATAAGGCCACAGATAATGCTTAGAATTGAGTGGTGTATTCTTCTCGTGTCCCTCCACCTTCTCTTTGAGGTGGATCAGGGTAGAGTTTAAGttaaactttatttttttctatttggTCTGAGCAGTACAGTTTTAGAAGTTGATTTTACAATGTCTAATGGCTCATATTCTGCTTAAGAAATGACCCTTCCAAATGTACTCCTTGATTTTCCTCTGGTCATAGGTAaaccaatatacagtacatggtttGCTTACTTATAGTAGGACATTATACTTTTTAGTTGTCTTTTTCCAGTTCAATTAGCATACTGTAGACTACAGTGCAACATCAAACAGATGGGAGTATAGAGAagtggagaacacagaatgaattGAAATAACAGGCATCCTACTGCAATCCCCAATATCAGgttgagtacagtagtgtagacgAGGGGCTCGCTTCTAGACCCAGATACATCTACTGCTTTTATTCTTCAACAAATATTAAACAGCAAAAAAAAGGATAATGTAGTCAAGAGCGTCATGGGACCTCCATGGTGACCAGTTTATCATTAGTGACAGTGTGTATCGCTGTCAGTTAGATCCTGTAAATACTATAAAGAGTGGAAAAGATTGTGCTGTGTCCTTTACGTTATGTATGTTATTGAAATTCAAAAAAGATGACAAACATGAAAACCAATTTAAATTACCAGTTTTATTTGTGTGCTACGTCAACCACTAAGGTGACATTTTGGGTTCTTGCTAACTCAAACATTCACCCCACAGACAGGCTTTAGCAACACAGGGGACAAATGTAATGTGTCACCTTTGACCTTGCTGAGATCCAACACCCACCCAATTGCTGGCCAATCTGTTGATAGAGCAGAACCAATTAAAACAGCTTTCAGAGAGCCTGCTTTTATACAGGAACCTATCGCATCTTGCCAATATAGCCCATGGCTTTGAGCTCCAGACATGCTCCATCTCTTACCTGtaccagtttgttttgtttttctgtccTGTAAGAGCTTAGATGAAGCCCTTCAAATCTTCCCTGATAGATACAGTACACCAACCAACCCCCAAGGATTCCCTATTCCTGTATAGCAGCTCAAACATCCAGTTAACAGTTCATCAAAACTTTGGACTTCAATACATAAACGAACTAGATTCTTCACTGTATAACTAGAGCAtcagtatgtgacaaatacaaagtTATCTTTAAAAAAATGAGGACTTGTACAAATCTAaaagttaaaaaaaagaaaaatacacTGCCTTGTCATGGGTTTGGTCTTATGAATAAAATATATGCTTGATGTCCAAATGAGTCTGACTGTCTCTTTCTTGTGCTTGTGTCACCGTGCTACTGGGTCACAACAGTTTCATGAATCTGTTAATTTATAGGGTAAAATCCTAACTTCAGATCTGCCACTGTAATTCAAATGTCAACATTAATGCATCTCGGACCAACAACCTGATTATAGACTAGCTAGGCTATATGAAATTGGCATCTGTAAAATAAATTTCCCTAGATTTGTACAATTTGTTTACATGAAGGTCTGTCTAGTTCGTAAAGACATGTTTGAACTTAactaccactcctctcctctgggTGTGAGATGTTACACTATTTTATAGTGAAAGAGAATGTATTAATATAATCCTGTATTTAAAAATAATACACACACCGTCTTTTGTAAAAACTAGCCCGGTTTCCCCAATAGCGATGGAACTTAGGCTTACGAGTGTTTTAACAATGCATCTTTTCTACAACGGCTGAAGATAAAACACCACACAGTTGCTAAGTGCGTCTTTGGGTGGTGTTGTCACTGGGATGCAGGGTCCACATGAGGGTGCCCGCATCCATAGAATTAGTAGATCAGACACTCATGTGGAACAATGGCCATGCTGGATGTACCATTTCTAATGTTTGAAAAGGTGCTGCTTCCCACAGTCTCTCATATGGCTTAAAGAACTGTCTTTCCACACTTTCAGAGGTTAGGTTTGGGGGTACCTCATCCACAGTAATAGAGGTACTAGAACTAGTCTTACTTAAGGTATAGTACAAGCAGTACTGTAGGTTTGAGGGTGCATCAGCCACACTGGCAGCAGGAAGGTTTGGGGGTGCAGTGCGGGGTGCAGCAGGGCTCAAGATCAGGGTCGCTACCTTTCCCGATCTGGCTCTCCCCAAACACCATGGAGGCTTCAAACTGTTCCTTGACCAcgcctatcctctgcagcagggcCTGCAGGTCGGGGCGTCCCAGCGGAGACAAGGGATAGTTCTCACTGGGGTCAGACTCCAAGTCAAACAGCAGGGGAGGATCATGGGGCTTCAGGAAGGAGATTATGTGACAGTCCTGGTCTGGGGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210391 lncRNA upstream 256250 76416215 ~ 76418354 (+) True G185461
TU210393 lncRNA upstream 273839 76354349 ~ 76400765 (+) True G185463
TU210389 lncRNA upstream 321297 76353089 ~ 76353307 (+) True G185459
TU210387 lncRNA upstream 323242 76351029 ~ 76351362 (+) True G185457
TU210380 lncRNA upstream 330199 76343992 ~ 76344405 (+) True G185450
TU210585 lncRNA downstream 2874 76680608 ~ 76681061 (+) True G185624
TU210699 lncRNA downstream 150415 76828149 ~ 76833657 (+) False G185717
TU210701 lncRNA downstream 150415 76828149 ~ 76831474 (+) True G185717
TU210769 lncRNA downstream 250184 76927918 ~ 76932510 (+) True G185783
TU210665 lncRNA downstream 484281 77162015 ~ 77165608 (+) False G185695
XM_021572558.2 mRNA upstream 531 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572567.2 mRNA upstream 531 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572576.2 mRNA upstream 531 76538676 ~ 76674073 (+) False mapk8ip2
XM_036990350.1 mRNA upstream 136937 76531419 ~ 76537667 (+) False LOC100135907
XM_036955942.1 mRNA downstream 185715 76863449 ~ 77159844 (+) False LOC110502025
XM_036955945.1 mRNA downstream 277824 76955558 ~ 77159844 (+) False LOC110502025
XM_036955949.1 mRNA downstream 293906 76971640 ~ 77159844 (+) False LOC110502025
XM_021572682.2 mRNA downstream 617353 77295087 ~ 77306466 (+) False LOC110496661
XM_021572750.2 mRNA downstream 1019492 77697226 ~ 77716788 (+) False nfat5a
TU210492 other upstream 67629 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 239989 76433817 ~ 76434615 (+) True G185462
TU210196 other upstream 505309 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other upstream 505309 76167657 ~ 76169295 (+) True LOC110496459
TU209106 other upstream 1587197 75086622 ~ 75087407 (+) False LOC110496136
TU210702 other downstream 152679 76830413 ~ 76832500 (+) True G185718
TU210667 other downstream 469919 77147653 ~ 77160850 (+) True LOC110502025
TU212151 other downstream 1099393 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 1370153 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 1370153 78047887 ~ 78048800 (+) False LOC110502077

Expression Profile