RNA id: XM_036955949.1


Basic Information

Item Value
RNA id XM_036955949.1
length 5621
RNA type mRNA
GC content 0.60
exon number 22
gene id LOC110502025
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76863449 ~ 77160850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTCGGTCACTAGCTGTATCTGTATGTCAGTGAACCAGCGAGCCCTACTCTAACCTAATGTGCCTACATTTGAGGACCTACAGAGTCTAGCCACCATGCTGCTACGCACTGAGATAACCAGAAGGAGCCAAGCAACAGAGgcgAACCTGAAGAAGTTTATGGAGTATGTACAGCAGAGGAACATTGAAAAGGTGTCCAAGTTCCTGGAGAAAGGTCTGGACCCCAACTTCCACGACCCTGAATCGGGAGAATGTCCTCTGACCATGGCGTCTCAGCTGGAGGGCTGTGCAGACCTCATCAAGGTGCTGAAGAGTGGAGGAGCTCACCTGGACTTCAGGACCCGAGACGGCATCACTGCACTGCACAAGGCTGTCCGCACCAAGAACCATACGGCCCTCATAaCGTTGCTGGACCTGGGTGCGTCTCCTGACTATAAGGACAGTCGAGGGTTAAGTCCGCTCTATCACAGCTCTATGGTAGGAGGAGATCCCTACTGCTGTGAACTTCTGCTCCACGACCACGCTCAGGTGGGCTGTGTGGATGAGAACGGTTGGCAGGAGATAcaccagGCATGCCGTCATGGTCATGTTCAGCACTTGGAGCACCTGCTGTTTTACGGAGCCGACATGACTGCTCAGAACGCCTCTGGAAACACCGCCCTTCACGTCTGTGCCCTCTACAACCAGGATAGTTGTACCAGAGTTCTACTGTTTCGGGGAGTGAATAAAGAGATCAAGAACTACAACAGCCAGACAGCCTTTCAGgtgGCCATTATAGCAGGAAACTTTGATCTGGCTGAAATCATCAAGATCCACAAAGTGTCAGACGTTGTGCCTTTCAGGGAGACCCCATCCTACACCAACCGTAGACGTGTGTTGGTGGGAGGACTGCCCTCGCCCCGCTCCCTGCTGCGCTCCGCTAGCGACAACAACCTCAACGGGGACAGCAGTCAAGGTCTGGGTCAAGGTCTGGGGCAGGGTCACGGTCGACAGGgtcagtctcctgtcccctctctgaGAAGCCTCCCTGCACTGGGACAACACCAACAACATGCCAGCCTGGgggagACTCGTCATGGAGAGATGCCAGACAGCAGTCTCCAGAGCACAGGCAGCTCTCGCTCCTCCCACTCCCGCTCTCCCTCGCTACACAGTCATCTGCATGAGGGCGATCAGGGCATCAGGAAGACACACGGACACCCTCTAGGACACGTCCCTCGAGGACGGCTCAGCCCGGGTACGGTGCAACGGGACCCCAGTCCCCCCACCCACACCCCTCCTGCCATTGCCGGTGCCAGCGGGCCCAAGCGGAAACTCTACAGCGCCGTACCGGGACGTACCTTCATCGTGGTCAAACCGTACACGCCACAGGGCGAGGGAGAGATCCAGCTGAACCGTGGAGAGAGGGTCAAAGTGTTGAGTATAGGAGAAGGAGGTTTCTGGGAGGGCACGGTCAAGGGGAGAACAGGCTGGTTCCCTGCCGACTGTGTGGAAGAGGTTCAGATGAGACAGTATGACCCTCGGCTAGAGACAAGAGAGGACCGCACCAAGAGACTGTTCAGACACTACACTGTGGGTTCTTATGACAACGTCACCTCATACAGTGATTACATCATAGAGGAGAAGAATGCTATGCTGCAGAAGAAAGAAAATGAAGGCTTCGGCTTCGTCCTGCGGGGAGCCAAagCTGAGACGCCTATTGAGGAGTTCACCCCAACACCTGCATTCCCTGCCCTCCAGTACCTGGAGTCTGTCGACGTGGAGGGAGTGGCCTGGAGGGCTGGGCTTAGGACAGGAGACTTCCTCATAGAGgtgcaCGGAGTGAACGTGGTGAAGGTGGGCCATAAGCAGGTGGTGTCTCTGATCAGACAGGGGGGCAACAGTCTGCTGATGAAGGTGGTCTCTGTCACACGCAAACCTGAGTCTGAGGAGGTGGTCCGCAAGAAAGCTCCCCCGCCACCCAAGAGAGCCCCCAGTACCACTTTGACACTGCGCTCCAAGTCTATGACCGCCGAACTGGAGGAACTGGCTTCCGtccggaggaggagaggagAAAGGCTAGATGAGATGCTAGCGCCTCAGGAGCCTGTGACGTTACGTTCCCAGCCCACAGAGGCCGACTACAGAGCTGCCACTGTCAAACAGAGACCTACCGGCAGGAGAATCACACAATCAGAGATCAGTtCGTTGTTTGAGAGGCAGGGCATGGCATTACATGGTGGGCTCCACCCAAGGATGGAGAGGGCTCATATGCAGCTGCCTAGAGGGATGTCCAGGACCAAGTCATTCGGTGCGACTGAGGAGGACCGTCTGTCAGTTTTGGCTGGAGAACACCGTTTCCCCCGGAGCTCCTCAATGACGGACAGCCTCAGAGACCACTCCCACTCCCATTCTATCCCGCCCCCTCCCCAGAccgcacctcctcctcccccttccctctactACCTGGACACTGGCCCTCCTCCTGCTTtctgcccccctcctccccctgccaGGGGTCATAGTCAGGGTCATGACCCTGGAGGTCGTTCCAGCTTCAAGCCCTCCTCCCTGGACCTGGACCGGCCCTACGACCCATCACCCCGCCAGTCCTCCCACGCCGAACGCCAGAAGAAGGCAAGGTCAATGATTATTCTACAAGATTCCTCCCACTTACCCGTGGAGCCCACCGACATTCCCCGCCCCTCCGCATCCGCTACACCACCAGAGCGAATCAAACGGAAAGGCCGGGTGATTGACAACCCGTACGCCAATGTTGGCCAGTTTAGTATTGGATTGTACACACCCACCAAGCCCCAGCGCAAGAAGAGCCCTCTGGTGAAACAGCTACAGGTGGAGGACGCACAGGAGAGAGCCAGCATCGCCTTGGCCGCTGCCCACTCCCGAGAGACCTCCCCCTCTGGCcgacacccacacacccacagccacacacacaccagccggGCCGACTACTACCAGCAGCAGCTGAAGGTGGAGCGCGAGCGTACGCGTCTCCAGGGAGAGGCCCTGCTACAGGGGAAAGGGCCGTTCGCTGTCGCTATCGCTGGCGCCGTGAAGGACCGAGAGCGCCGACTAGAGGAGCGGAGGAAATCCACAGTCTTCCAGTCGGTGGGGACCATGGAGGGGGGGTCGGGGTCTGCCCCTGAGCCCCCCTCCTACACCACATCTAGATCCATCGATGAGCGCCTGCTCAGCAGAGAACTAGGCCAGCTGCCACCCCCCGCCCTGGCCCTGCGCCCCTCACCTGGCGGCACTACCTTCATCCACCCACTCACAGGGAAGCCCCTGGACCCTAACTCACCCCTTGCTCTTGCGCTGGCCGCAAGGGAGCGGGCACTTACCTCCCAGAGCCAGTCCCCCGCCAGCAGCCCTGAGCCCAGGACTAAACAGGACAGGGCTGGTGTTGGAGGTCAGGGGGCTTCGCTTTTCATCGAAAGCCAGACCAAAGAGCCTCAATATGGGGGCGGGAGGCCGGGGTCGCCCGAGGCTAGTAAATCCCAGTGGGGAGTGTCATCACCCGCCTTGCTTCGCCAGGAGAtgaagggaagaggggaggagaggaaggaggagaggagaacggaAGATAAGAAGAGTATGTTGATCAGTATCATGGACACATCACAACAGAAGACAGCTGGACTAATCATGGTCCATGCCACCAGTAACGGCCAGGCGGTGGGGCTGGGACCAGGGCTGGAGCAAACCCCCACCTCCCTAGCTACCGAGCCCAGTAAACCCTCCCTCAGTCGGGCTCTGTCGCCCAGCCCATCTGCCTCTCAGCCCCAGGCCCAGGGCCAGGGCCCTTCCAGCCCAGCCCAGGCTCCCCTGGCCCAGGGCAGTTCAGAGGAAGATGTGGAGCCTTACACAGTGAGCCTACCTCCAGCCATGCTGTCCTCCAGTGATGAAGAGACCAGAGAGGAGCTGAAGAAGATCGGGGTGCTCCCACCTCCGGATGAGTTTTCCAATGGGTTGTTGGCCAATTCACAAGCCCAAGCCCAAGGGACCCCTGTACCCCAGTCTAAATCCATCACTTCCCCTACAACCCCTACTCTCCTCACCCCTTCCACCACCACCCCAAACCCCAGCCTGACCCCCACCCAACCCCAGGGCCCTCCCCTACAGCCTACCCCCGGAGGAGCAGTCGTCTCAGGGAAACCTTCATACCCGGACCAGCCCCATCCTCCAGCCCTGCTGGCTGAGTCTGGTTCAGCAGCAGACTCTGGTGTGGAGGAGGCAGACACACGCAGCtccagtgagagagagcgagaccaccACCTGGAGACCACTAGCACTGTGTCCACCGTCTCCAGCATGTCCACTCTGTCCTCAGAGAGTGGCGAACCcgctgacacacacacctcctatGCCGACGGGCAGACCTTCGTGCTCGACAAGCCGCCAGTGCCTCCCAAGCCCCGGCTCAAGTCCCACTTTGGAGGCAGTAAAGGCCCGGTCACCTTCAGGGATCCGCTGCTGAAGCAGAGCTCTGACAGCGAGCTGCTATCCCAGCAGCAGGCGGCTTCTCTAGCCGCAGCAGCAGCCGGAGGGGCAGGGCTGGGGCATGGAGGCCTAGGTTCTGGAGGCCTGGGTTCTGGAGGCCTGGGTTCTGGAGGCCTAGGGTCAGGCTCTATATCTGGCCTGGTTGGAGGCCCCGGGAGGCCCCGCTACCTCTTCCAGAGGAGGTCCAAGCTGTGGGGGGACCAGATGGAGACGCGAGGACCCGGAGTGGGGTTAGGGATGGGGAGTCTGGGGAGTCTaggggggttggggttggggctggggggtgaggagggggggaaACCATCGGTGATGGGGGAACTAAGTTCCAGATTGCAGCAGCTGAATAAGGATACCCGGTCACTGGGGGAGGAGGAGCCACTGGGGTCATCGCTGGACCCTGGGAGGAAGTCCCCTGTGACAGGCGCCAGACTTTTCAGCAGTCTAGGAGAGCTCCACACCATTTCCCAGAGAAGCTACGGCACCACCTACACCATCCGGCCTGGCAGCCGCTTTCCCGTTACACGCCGCACTCCAAGCCCTGGCTCGGGCTCCCCGGATCGGGGTGACCCCCTCAGTCGACTCCCAGGCTTTGGCCTACCCACCTCACCCACCATGCCGCACCACACCATCCTCAAGTCGTCCAGCCTCAGCCTGCACCATGAGCCCAAAGAGGTACGTTTCGTTATGAGGAGCTCCAGCGCCCGGTCCCGCTCCCCCTCCCCGTCCCCTTGTCACTCCCCCGGGCTGGGCTCGCCCCTCCTGGCCCTCAGGCCCTTCCACCAGAAGCCCCTCCACCTGTGGAACAAGTACGACGTTGGAGACTGGCTGGAGAGCATCAACCTGGGGGAGCACAGGGCCGGCTTTCAGGAGCACGAGATCGAGGGCTCGCACCTCCCGGCACTCACCAAGGACGACTTCGCTGAGCTGGGGGTGACGCGCGTGGGACACCGCATGAACATCGAACGAGCACTTAAACAACTGCTGGAGAGCTGACCCctgctatgagagagagagggggatagagagggagagaaagaaagggagatggagagagatagatggggagagggagatgtggagagagagagcgagagagagagagagagagagagcaagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210769 lncRNA upstream 39130 76927918 ~ 76932510 (+) True G185783
TU210699 lncRNA upstream 137983 76828149 ~ 76833657 (+) False G185717
TU210701 lncRNA upstream 140166 76828149 ~ 76831474 (+) True G185717
TU210585 lncRNA upstream 290579 76680608 ~ 76681061 (+) True G185624
TU210503 lncRNA upstream 293906 76674604 ~ 76677734 (+) True mapk8ip2
TU210665 lncRNA downstream 2171 77162015 ~ 77165608 (+) False G185695
TU210666 lncRNA downstream 2171 77162015 ~ 77165608 (+) True G185695
TU210908 lncRNA downstream 5931 77165775 ~ 77165991 (+) True G185915
TU210909 lncRNA downstream 6267 77166111 ~ 77167067 (+) True G185916
TU210910 lncRNA downstream 8753 77168597 ~ 77168898 (+) True G185917
XM_021572558.2 mRNA upstream 297567 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572567.2 mRNA upstream 297567 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572576.2 mRNA upstream 297567 76538676 ~ 76674073 (+) False mapk8ip2
XM_036990350.1 mRNA upstream 433973 76531419 ~ 76537667 (+) False LOC100135907
XM_021572682.2 mRNA downstream 135243 77295087 ~ 77306466 (+) False LOC110496661
XM_021572750.2 mRNA downstream 537382 77697226 ~ 77716788 (+) False nfat5a
XM_021572757.2 mRNA downstream 542383 77702227 ~ 77716788 (+) False nfat5a
XM_036956023.1 mRNA downstream 543214 77703058 ~ 77716788 (+) True nfat5a
XM_021572799.2 mRNA downstream 617222 77777066 ~ 77780795 (+) False LOC110496763
TU210702 other upstream 139140 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 364665 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 537025 76433817 ~ 76434615 (+) True G185462
TU210196 other upstream 802345 76167657 ~ 76169295 (+) False LOC110496459
TU212151 other downstream 617283 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 888043 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 888043 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 977669 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 1107445 78267289 ~ 78270045 (+) True G187320

Expression Profile