RNA id: TU211794


Basic Information

Item Value
RNA id TU211794
length 1490
lncRNA type read_through
GC content 0.48
exon number 3
gene id LOC110496661
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77295087 ~ 77387938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAAGAACAGAGGCTATGCCCAGTCCTGCCGCTACAAGCGGGTCCAGCAGAGACATGTTCTGGAGGGCGAGAAGACGCAGCTGATCCAGCAGGTGGACCACCTCAAGGCGGAGATATCGCGGCTGGCCAGGGAGCGGGACGCATACAAGGACAAGTACGAGAAGCTCATAACCAACGGCTGCAGGGAAAACGGATCCGACAACACCCCCTCGTCCCCAGAGTTTTTCATGACGTCGAGAAAGTTCCTCCATCTGTGATAGTGACCCCTGAACCCTGCACATGACCCTTGACCTGGAGTCTAAGAAACCATGACAGAGGAATGCTGATATCTTAACATCATTCCGCGGCGCCAGTCGGCCACAAAGCACAACATCCACACATCTCCAAACCACCCAGAAACCAAGCAACAGACCCTGTACAGAAGTCCAGATGGACCCGTCACCCAACACTGCACACTTTCATGACGAGATTATCCCCCGAAACAAATGACAACAAAACTAAACATCCAAGGAAAATACTGAGTTCCTGTTTGATCAACTACTAAAACTCCtcgattctctctttctctatcaccaGTAGCTACATACATAATTGTGACTGAACATTGTGACAAAGATACAGTACCACATTCTACATTACATTTTGTAGAGTATTATAAGTTATAATATGTAGGTTGGAGGTCTAACTGTAGACAGACACTGTAGAGAGGAGAAATGATGATGCGTGAGTTCCCGTTAGCACATAGGCCCAATGCTGTTCCTGTAAATAATGGGCAGTAGAACTGAATAGGGCCTCATATGGAATACAGCTAGTccatctgtatatagccatgacACCATAGCTCTAATATGTACATAGGCATTCAATTATACCTCCTTATTTCTCCTATCCCCCTTCAACCCTCCTACACTAGCGCAATGATACTCACCATATCTCCATACTCAGAcatgtcaaatatatatatacaggaggAAACTGGATACAGAGAGAAGATACACACAGTGTCTGTTGCAGCTGGAAACACACTGGAGTGAGAAACACAGACCCACTTTGGCTGGAATAAGGAACTGGTGAACTCTCCCTGACACAAAGAGGCACACAATAACCCCGGTTTACTTGTATGTGTATTTTACTTCCCTTAATGAAGTGAAAGTTTCAGTTCAATGGTTTGAAAGCTTTCTACAGTCCACTCAATGTACAAATTTTAATTTTCATCcacacttcctccctctccctccattcctgaTTGGCtagtccttcctctctcccccagtcctgaTAGGCTGTTGACAGTCAGTGTGGGCGTGTCAATCAGAGGGCCTGTAGGCCCGTAGGCCTCTCTGAGACCAGGCGCTCGCTTAGCTCCCACAGGCTGGCTGCAGTGACCTGGTCCTCGGCCTGGGGGGAGGGCAGGCAGCGGAAACAGTTGTTGAAGTACATCCCTCCTAGACCCTCCAGCTCCGGAGCTACCGCACAGTACACCGTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211807 lncRNA upstream 42137 77242039 ~ 77254127 (+) True G186751
TU211789 lncRNA upstream 74893 77221119 ~ 77221371 (+) True G186736
TU211771 lncRNA upstream 89880 77206087 ~ 77206384 (+) True G186718
TU211770 lncRNA upstream 96254 77199728 ~ 77200010 (+) True G186717
TU211769 lncRNA upstream 97090 77198969 ~ 77199174 (+) True G186716
TU211889 lncRNA downstream 2015 77389713 ~ 77394282 (+) False G186826
TU211892 lncRNA downstream 2015 77389713 ~ 77394282 (+) True G186826
TU211901 lncRNA downstream 19104 77406802 ~ 77408255 (+) True G186835
TU211904 lncRNA downstream 22678 77410376 ~ 77411754 (+) True G186837
TU211940 lncRNA downstream 87312 77475010 ~ 77477871 (+) False G186869
XM_036955942.1 mRNA upstream 136420 76863449 ~ 77159844 (+) False LOC110502025
XM_036955945.1 mRNA upstream 136420 76955558 ~ 77159844 (+) False LOC110502025
XM_036955949.1 mRNA upstream 136420 76971640 ~ 77159844 (+) False LOC110502025
XM_021572567.2 mRNA upstream 622191 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572750.2 mRNA downstream 309528 77697226 ~ 77716788 (+) False nfat5a
XM_021572757.2 mRNA downstream 314529 77702227 ~ 77716788 (+) False nfat5a
XM_036956023.1 mRNA downstream 315360 77703058 ~ 77716788 (+) True nfat5a
XM_021572799.2 mRNA downstream 389368 77777066 ~ 77780795 (+) False LOC110496763
XM_036956070.1 mRNA downstream 451070 77838768 ~ 77882208 (+) False LOC110502056
TU210667 other upstream 135414 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 463764 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 689289 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 861649 76433817 ~ 76434615 (+) True G185462
TU210197 other upstream 1126969 76167657 ~ 76169295 (+) True LOC110496459
TU212151 other downstream 389429 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 660189 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 660189 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 749815 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 879591 78267289 ~ 78270045 (+) True G187320

Expression Profile