RNA id: XM_036956023.1


Basic Information

Item Value
RNA id XM_036956023.1
length 7812
RNA type mRNA
GC content 0.48
exon number 10
gene id nfat5a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77697226 ~ 77716788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtgggaCCAGCTctggaacaggaggaggagacccAGGAGCAGGGGGGGTGGGAGCCCAGCAGCAGCCCCAGAACACCCCCTCTAAGCGGAGGCCAGTGTTGAGCATCTCTCCCCCTCCAGAGGACCTATTTGATGACAGCAATATGTCCTGCCAGGAGGATCCAGCCCCGTCTGGGCCAGCAGGGCCAGACTCAGAACACAGCAGCAGCATCTGGGCCGACGACTCAGCCTCCAACTTCAGCCTGATCAGCTCCAGCTCCTACAACGACAACACAGAGGTCCCCCGCAAATCCCGTAAACGCACCCCCCGCCAGCGGCCCGGGCCCAAGCCTGCACCCCCAGAGGACAGCATGGACGTGTTTGATGCAGACAGTGCCAAGGCCCCACACTTTGTTCTGTCTCAGCTGGGACCAGACAAGGCCAGCCCCAAGCCCAGGTCAGTACCCCCAGAAGAGTGAGGGTAAGGAGCTGAAGATCCTGTTGCAGCCAGAGACCCAGCACCGGGCACGCTACCTGACTGAGGGCAGCCGCGGCTCTGTCAAAGACCGCACCCAACAGGGCTTCCCCACAGTCAAGTTGGAGGGTGTCAGTGAGCCGGTGGTGCTGCAGGTGTTTGTGGCCAGTGACACAGGCAGAGTGAAGCCTCATGGGTTCTACCAGGCCTGCAGGGTGACAGGCCGAAATACCAAAGCCTGCAAAGAAGTGGACATCGAGGGAACCACTGTCATAGAGGTCCCCCTGGAGCCCAGCAACGCCATGTCACTGGCGGTTGACTGTGTGGGGATCCTGAAGCTGCGTAACGCGGACGTGGAGGCTCGTATTGGGGTTGCCGGGTCCAAGAAGAAGAGCACCCGGGCCAGGCTGGCCTTTAGAGTCAACATCCCGCATGCTGATGGGTCTGTCCTTACCCTGCAGACCACCTCCTCACCCATCCTCTGCACCCAGCCAGCGGGGGTGCCAGAGATCCTGAAGAAGAGTCTCCACAGCTGttcagtgagaggaggagaggagctctTCATCATAGGGAAGAACTTCCTCAAAGGAACCAAGGTCATATTCCAGGAGAACCCAGCAGATGATAACTTGTGGCAGGCCGAGGCAGAGATTGACATGGAGCTGTTCCATCAGAATCATGTGATAGTGAAGGTTCCTCCCTAccacaacctgtctgtctcctctcctgtctctgtggGCGTCTACATCATGACCAATGCCGGGAGGTCACATGACGTACAGCCCTTCACATATACCCCAGACTCAGAGCACTCCTTGGACATGTCTGTGAAGACAGAGGGGTCTTCTCTGGCTAAGGCCTGCACCTTCCAGGACCAGATCAAGTCTCTGGCCTCTGACCCTGCCCAGTCTGCTGGTGAACTGGTCAAACGACAGGAGGTCACCCCTATGGAGGTCTCCAGCAATACTCCATCCACAGCACTCTTCAAGCCGTCATCTGACACCCTCGTCTCGGTCCAGCAAACCCTGGAGCTGAGCTCCAGCACCCCGCCTAGCACTGAGTCCTTCCCCAGCCCCATGCCTCTCCAGCCTGGGGAGGTTGACTTCCCCCAGTCCCAAGTCTTCCCCTCCCTGGAGCCCCTCTGCACCATCCAGAAGCAGGACATCGCCCCCACCACCTCCTTCCCTGTCTCCAGCGACAACACCACCCTCCCCCCTGTCCCCCCAGAGGTACCCCAGCAGTTTCTCCGGGACCCCCAGGAGAGCCTGCCTCAAGATTCCTCCAACCCCAGCAGTGAGGTGGTGGTAGTGGGCATGTCTCAGATGGCACCCCAGTCCCAGCTCCCCCTGTTCCCCCAGGACGGGGTGGCACAGCTGGAGAGGGCAGTAAGGGAACTCCAGGCAGGGGGAAGCGACCTGGTACAACAGGTTATGGAGGCAGCAGTGGCTCAACAGCAGCTCAACTCAGTGTTGTACAGCCCCACACCCTCCACTGACTCACTGCAGCAACACGTACAGGACACCATGAACAGCCTGAGACTGGGGGGAGCTGAGGGCTCTCTGGCCACACAAcacctacagatacaacagcaacaacagcagatCCTTGGCAACATGcatcaacagcagcagcagttacATCAACAGCAAGTCCTTGGCAACATACAGCTACAACAGCAATTATTATTACAGCCACAGGATCAACAACTGCAGCAACAGATACTGGGTAACCTACAACAACATCAACAGtttcaacagcagcagcaggtaCTTGGCAACATACAGCTACATGATCATCAACAACTTCAGCAGCAGCAACAAGTACTGGACAACCTACAACATCAAAACCAAGCACTAGGCAACCTGCAACAGCACCAGCTACATCAGCAACAGTTACAACAGCAGCTCCAGACTGAGTTCCTCCAGCCCCAGATCCACTCCTCATCTCAGCCCCAGCAGCAGCCTGTGTCTCTCCTCCAGCAGGCTGGGGAGCTGCTCACCATCCAGACCTCCAGCTTCCCCCAGGAGCCCCcatcccactcctctcctccccagcagCTCTTCCAGTCCCCCAGGCCTCTGTCAGAGACCTCCAGCCCCCAGCACCAGGCAGCCCTGCTGCAGAACACTCTGACTGTGCTGACCAGTGGTAGCCTCAGTCAGGAGCAGCAGGCCACAGGGTCCACACTGTTCCTTTCTCCCAACACCCTCTCTAACCAGGGTAGTCAACAGCAGCTAGCGTTCCTGTCCTCCATGGAGACATCAGCCTGTGAGCCCCAGACAATGTCAATGTTCCAGGCCCAGCAGCAGCAGAGCACCCCCATGGACCATCAACAGTCCCTTCAGCAGACACAACTACAGCAAACCCAGCAGATTCCCATGGCTCAGCAGAGCTCCTTGTTCCAGACTAGCACTCTGCCCCCCAGCCAGCACCCTCAGCCCCAGCCCACCGGCCTCCTCCTCTGCACCGCCTCCCTCAAACCCCAGGCTCTGCCCCCAGCCCTCCTCTTTAGTACCCAGTCCCAGGGCCCCTCCATGGGCAACAACAGCAACCCTTGCCCCCAGGACACCCCTGCTTCCCTCTTGTTCTCCCAGCCCACCatggtgggggtcagggttgaGGTAGCCCAGACGGACCCAGTGGAGCCCATGTTATTCCAGGACCAGAGCTCCTCTGTAGGGGGGACCCCTGCCTCCAGAAATACCCCTCCGCAGGGTCTGTTCCAGGGGCAGCAACCTATGCAGGTGGGCTCCAGCTCAGTTAATGGCCCTCCCAGCCAGCAGGTGGAGCTGTTCCTGCCACAGGGTTCTCTTTCTGGTCTGCAGGGCAGCATGGCTACACAGGAACTAGGAAACCAGGCTGCAGCAGGGGAAACTATCTTTGTAATGCAGAGTGGGTTGGGGGTTGTGGGACTGCAAAGTACCACATCCTCCCCTGGTAAGAGACCCCCAGAGCAGCTGTTCCAGACGGGAGTGAGCGGGAACGTTGGCCAGCCAGTAGGACAACCCAACCTGTTTGTGTTTGGCCTCCAGAACGATTCCTCCCAGCTGATGACGTCCTCTGGTTCTACAATGTCTGCCCAGAGCCAGCCCCAGAACCACAACCCTTTGCAGGCCAGCCACATCCAGCCTCTCATAGACCCAAACATGGCCCAGACCGCCACACCCATGCAGACTAATCTTCAGACACCTATGCAGACTGGTCTACAAAACGCCATGAGTAGCTTAGAAAATGCCTTGCAGGCCAACCTACAGACCCCAATGCAGACCAACATACAGACTACCATAGAAACAACCCCCATGCAGACCAACCTCCAGACCCCCATGCAGACCAACCTCCAGACCCCCATGCAGACCAACCTCCAGACCCCCATGAACGCCTCCCAGAACATGGAGAAGATAGAGGACCTGCTGGAGAGCCTACAGGAGCAGTGATCTTTACTGGGACCACCGATACACTGATGGGGGTTCTAGTGACTTCTGCCCACTCTTTGAACCGCAGACTGGGCCAGGTTGTGTCTGCTGCTTACAATACAACCCCTCCAAGCAACACAGATATGGAGAATGGGGGTAGAGATGTCTGGCCATGCTATGAACCCCCTAAGAACATGAAGTAATGAAGACATTTTAAAGATTTTATCAGACGTGCTTGTGTACCCCTAGCTCATATTTTGATGAGTGTCTGTACATGCATTGATAGACAGACGGCCGGGCAGACGGCGTTATGATGGATTGGTTGAGTGACTACTCCTCTTGCTGGATCAGAGGACATTAACTTCTGTATCCATCAGTCTCACATGCAGTGGTTCTTCTATTTCATACTGTGTTATTGATGGCCTAACATGGGGGGGGGATACAGAAAGCTGGAGcaaaagagaaagacagatggtGGATAGATTGTGAGATTTAAAagcgagagagtgaaagagaagggCAGCCAGATGAAGGCATCTTGCTGTGTTCTTGTGTACAGCACAGCTTCAGTCAGATCATACAACAGTCAGTGTATCTGTCCAACATATCTCATATCTCTTCTTTTGGCAATTCCCATAGTCTGCGTTTAGTTGTGTATTAGTACACACAGGCTTTCTCCATTGTAAATGCTTAGTTTGCGTATGTTCTGCAACTTGTGTTTGTGGGGGAATTTTAGAATTTGATTTGGAAGCATTTCCAGTATATTGTGAAAGGAAGGATGCTTTCTACTGGGGAAAGTGAAGCGTTGTGTGGTGTTATAAACATTAAGCACTTTATAAACTGTCTTGTGTGACCAGCCAATCCTTATATCCATCCAGAGGCTCTGGGGTTAGAGCACATGTACTTGTTGACCTCCATTTAAATAACCATTGTAATGATTTTTGTCACAGTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTAACACATTGTCCATGCATTTATACATTTTCACCATATTTTTTGAGATTTTTCTAAAGATGTTTTTGTCTTAGTGTTGAATTCATCTGAAGCCTATTTATATCAAGTGATCCagccagtgtctgtctgtcaattCAGTCGGATTTCCCATAGTGAGCATACAGTCTTCGTTTTGATGTCTGTGTGTAACTAGCTCCTGTTCGTAGGCTTGCATATCTCTGCCTACACCCCCACAAAACATTTATAATTTAAGTCAATACATTGTGTGTACACATACATGAGTGGGTGTGTCATTTTTCTAAAAGATTTACAGCATATTGCTATCTGTAGCCAACAATTTACTGTGTACTGTAACAATCTGCGTAATTTAACAGACTGTGTTTTACCTTGTCTTGTGTGTGGTTGTAGTTTTTAGTTGGTTTCTGGTTCATGTACTGACAGATGTTGAACTAGTACTGCCAGTGTTCAGGGCAGAGCTGTGCGAAATAGACACGCAGTACCTCTCCCATGCAACGTCACTAGGGACTCACAGCAACACAAAGGCTgttccaatatccacactagCATACCATTTCCTATGGACTTCCACAGCCAAAGTACTCTATTGGTATGCTATGCCTGTATGGGCATTGGAACATGCGCTTAAAATCTCTTACTTTGGCTGTTTAGACGGGCCactcaattctgatctttttccactaattggtattttgacagATCTTTTTCagtgctgatctgattggtcaaaagaccaattagtgaagaaAATGTCAATTGGTCTGCCTATCTAAACACAGCCATGGAGAGAGCCATTCTCATGTTATCTATGGTGCTATGTGCAGATGTGATGGACACTTCTAATGCGATGTTTATACTAATATTTTCTACTCATATCAACAGAACTGATATTAATCTTGTGGTTCAGTCTTGTGTTTCTATAGCGATGGCTGTGAGCAGGCAGCGTGAGGCGTGTGTATCTGGACTTACTGAAAACAAATGTTCTTTTCAAAACATCCTAATGTTTGTTAACTCATTTACTCTGTTTACTCATTTTTTTAACTAATTTTAAATAATGCAGCTTTCATGGATATTAAGTGTTTTTGTACAAATATTTTAAAATGACATTTGTAAGGTACTCTCCCAACAGTTTTGCCTCTTCTGTCATTTCCATGCAAATGAATATGCATTTGAACCCATGTTGCTCTACCCTGCTTTAGATTAAAGGTGATACTGCTATTCCATATCCAATAAGCAGTAGTCTGTTTTGACATATTGACATAAACAGATGGAATGACAACTTTTCAGTTGTTGCTCAGATCCCTATATGCTCATGTAGGCATTTGACATTTCATATTTTCTCATTCTGTCCTGAGAAAGTATCTACTCCATATACAGATGTTTTCACCCATGAGCCAGATTACATGATGTtctgatgtacagtatatcattGTTAAACTGTTGGATGAACTCCAGTGTACAGTTAGGTGTGTATACTACCAGATGTCTTCATGTACAACACGGGCCAACAGTAGTAAACTCATTCTAAGCTAATCATACATTTTGAAATGGACACCGTTccagcatagaagttatttattCTCACAGATAATGTATACTATTTTGAACACAATTGGTTTCACCTATCCAAAATGTCAGTTTGTCCTAAACACAACAGATGATCACATCTCTAAATACTGATGTTCAAGCCTCCATTCTATTTCAATGGGGGATTTTCAAGAGCACATAATGTGGCATAGTAATGCCATACAAATAGATGAAGCCAACCTCTTGAgtatctcctctctgtaatgAATGTAGCTTTTCCTTCAGTGAGAAATCTGTTAGTACCGGACCAATTCTGTTTTTAGAGAAAATATTTGAGGTATCCTAATATTGACCCTTTGGTATGTTGGACGTGTGGAAATACATTATTTTGTGGTTCTAATGTCTTGTTTCATGTTCCAAGACCTACTGTCACACTCACTTTGATGTATCTATTGCTTAACTGTTTGAATTCATCACATTCATCTGAAAATAGCACACACATGGTCTCCATCCACAAATCAGTTGTCATTATCTCATGTTGAAATGTGAGATAGGGGGGATCAGTTGTGAAGTTCTGTGTGCCTTGAAAAACCATCAGTGTAGTATGTTTACCAGATTCCCTTTGTGTCGTGAGTCAAGACTGCACATCTCCCTTGTCTAATGTTCTATGTCTAGTGTCAGTGATCTGCTTTTAGTTCCATGACCACCTTAACCAATGCAGTGTGATTTAATGTCATCCATCCCTGGTTGCAATACTACAAATGTGATCACCTTCACTCATGAACTGCTGTGCAGCTTAACACAAACTATACATGTTTGTTTCTATCCTAATTTCAGGACTGTTGAGATTCATAGTTGTGAGATGGAAAAAGGTGATTGTTCTGATTAGATGTTGCAGAAAGCTCTTGTTGGTGTGTGCTTGTCAGTATTACTGTTGCTGTGAAGAGCTTGACATGAGATCAAAAGGAGAAGTGATAAGCATTTATCAGTTTCAGTATCTATTCAGGCAATGCGTCAGACGTTACCCTCTGTTTTGTCATACATAAATGTATTTTTGTGGTGTATATTTCTCATTCTGCTGCTACATGATGAGTAAATAAAGATGAAGGTCTTTGCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212096 lncRNA upstream 15220 77687559 ~ 77687838 (+) True G187017
TU212073 lncRNA upstream 42597 77656410 ~ 77660461 (+) True G186996
TU212040 lncRNA upstream 95555 77606934 ~ 77607503 (+) True G186964
TU212026 lncRNA upstream 108692 77593061 ~ 77594366 (+) True G186953
TU212015 lncRNA upstream 142111 77560037 ~ 77560947 (+) True G186942
TU212108 lncRNA downstream 8677 77725465 ~ 77726151 (+) True G187029
TU212110 lncRNA downstream 10489 77727277 ~ 77728400 (+) True G187030
TU212123 lncRNA downstream 28948 77745736 ~ 77746889 (+) True G187039
TU212129 lncRNA downstream 32235 77749023 ~ 77749430 (+) True G187040
TU212147 lncRNA downstream 47861 77764649 ~ 77764849 (+) True G187051
XM_021572682.2 mRNA upstream 396592 77295087 ~ 77306466 (+) False LOC110496661
XM_036955942.1 mRNA upstream 543214 76863449 ~ 77159844 (+) False LOC110502025
XM_036955945.1 mRNA upstream 543214 76955558 ~ 77159844 (+) False LOC110502025
XM_036955949.1 mRNA upstream 543214 76971640 ~ 77159844 (+) False LOC110502025
XM_021572576.2 mRNA upstream 1028985 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572799.2 mRNA downstream 60278 77777066 ~ 77780795 (+) False LOC110496763
XM_036956070.1 mRNA downstream 121980 77838768 ~ 77882208 (+) False LOC110502056
XM_036956064.1 mRNA downstream 135141 77851929 ~ 77882208 (+) True LOC110502056
NM_001124273.1 mRNA downstream 246713 77963501 ~ 77969044 (+) True LOC100135906
XM_021572820.2 mRNA downstream 255056 77971844 ~ 78003571 (+) False fbxl13
TU210667 other upstream 542208 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 870558 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 1096083 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 1268443 76433817 ~ 76434615 (+) True G185462
TU210197 other upstream 1533763 76167657 ~ 76169295 (+) True LOC110496459
TU212151 other downstream 60339 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 331099 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 331099 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 420725 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 550501 78267289 ~ 78270045 (+) True G187320

Expression Profile