RNA id: XM_036956064.1


Basic Information

Item Value
RNA id XM_036956064.1
length 4116
RNA type mRNA
GC content 0.58
exon number 15
gene id LOC110502056
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77838768 ~ 77882208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtatagagaggatagagatagagaggagaggaagaaagataaGGGAGGGGGACAGAATGAGGGAATCACGTGACAGTGTAGCAGCTGCACAACTGAGAGGGCTGttcctggaggagagagagagcgacagagagagagagagagagagtgaaagaacaAGAGAGAGTGGGGCGAGAGAGaagaaatgagagggagagagagggaacgtgaAGAGGAGTGAGCGAGTGTGAAAGGGAAAaagagcgtgagggagagagaaaagataaTGCAAGCAGGAAGAACACGGAGCCAGCCggtATGAGCCATTAGTCGAAGTTGCGGTCATTAGGAATGATCTCCACGCCAACTCGCACCACGGCCACGGTCAGCCCTCTCACCCCGCTAGCCAATGGGAGTGCGGCTGCTCAGTCTGCTCACTCTGGATTCGCTGCCGCCCTCCGTCAATTGGCCAAACAGGCTGAAGATCCCAGAGGTTCTTCTCCCAGTAGTGAGTCTTCAGTCTCCTCTCCAGCCACCTGTCTCAGTAATTCAGTCACCACTCCTAAGAGGGGGTTGCCAGGGCCACTCCAGACCTCAAGTGGGGTAGACAgccttccctccacccctcctggAGTAACCATCGCCCCAACTCACAGCAAGACCAGCAACATTCTCTGTATAGGAGAAGGGCACCAGgctgAGTCAGGTGTTTGTGGAGTGAGTAGGGAGAGTGTTGGGTCTGAGCTCAGCCCTACCCAGAAGAAAGGAGGTTATCCTGTCCCCTCTCATCACGTCTTGGCTCACTCCTCTTACCCCTTCAGCCTCACCCCCAGCTCTGTCATGCAGGACCGGCGACTACAGGGCCTTAGTCTACCTGGTCAAGTACACCCTGCAGTTCCCTCGGGGACGGTCCCAGAGGAGTACCTGAGAGGACTCCGCCCCTTTGCTACCTCAGAAGACCTCCGCCTACGCTCGCTGCACCTGGGGCTTGACCCCGTCACCGCTGCCcatgttactgctgctgctgcctacTACCACCCTGCCTACCTCCACCACCTACACAGgATGGAggagtctctgtgtctgtctgcactgCGCTCTCAGTTCTACTCTGTACCAGCAGGCGGAGCCTTCTCTACCCTCCACCCCTCTGCCCTCCACATGCACGTGCCTGGGGCACGCTACCCTGGGGAGCTCAGCCACACACAAAGCGCAATAGCtgagagACTACAGATGGAGGAAGACCTTCGCCaacgagagaaacagagggagctTGAGCtggaacgggagagagagagggagcaggacagagagagagaaagggagcgagaaaggcagagggagagagagagggagagggagatggtgaaAGCGGTGGGGACTCAGTACCTTGCTGGACTGAAGGCTCTCACGGCTCCGCCGGAGGACAGGGTCAGACCTGGAGAGAGGCTGACACCCAAAAGGCTGGGTAAGCCCACCCTCCCTGCCCTCCCAGTCCCTAAACCTCTACAACCAgacctccagtcctccaggggGTCAGCCTCTCACCCCATTCTCACCCTGGTGCCCTCTCAGATGGGGAACGCACACACTGCCTCAGCCTCTACCGGGGGGCTCCATGGAACACTGGCCTCTGCAATGAAGCTCCAACAGGCCAACGGGGAGAAGCTCTGGTTGTCAAAGCAACGCCGGCAGGGGCAGGAGAGTGAGGCGTGGTCACCTGGGGAAGGGGTGGAGCCTAGGAGACACAGCAACAGGTCCAACGCCAGCCAGCGTGACCCAGGCAACAGAGAGTCTCAACCCCACCTAGGAGCCCCACCTCCACTCATCTCCCCCAAAGctcaccctcacctcctcccccacccccctgtccctcccaccaccctctggaaccctgcctctctcacagAGACCTCCCCAGACCCTCGTCGCAGGTTTGACTCCCCTATTCCCCCCTCCCGCCTTCCTCCTGGTCTGACCAGAGCTGAGTGGCCCCCCAGCTGGGAGCGGGGGGAGGAGGGATgcaggaggatgggggagggccCAGAGAGGTTCTCCTTCATCAGGGGACCCGTTCTGCAGATTTCTGGCCTCTGGAGCATGGCTGAGCTTGAAAGATCCACTCACAGTCTCCACCACCAAcataaccaccaccataaccACCTCCACCAGAAGGGCTCACTGCTCCTGTCctcccccagccccagctctgaCCTGGGGGTCCAGCGCCCGTccagctccccctctccctccagggACCTCCAGAAGTCTGAGCCGCCAGGCCAGGAGCCTCAAAACCCAGTGGTGTACGATAAGATCCTTCAGCAGCAGCACAGGCTGGTCAGCAAGCTGGATCtggaggagagcaggaggagagaggccaggGAGGGAGggtATTACTATGATCTAGATGAGTCGTATGATGAGAGTGATGAGGAGGAAGTGAAGGCCCACCTCAGAAGGGTTGCAGAGCAGCCCCCCCTAAAACTAGACACATCCTCAGAGaagGTGTGTTTTCTGCGCGTGTGTGGCCTGACCACGCTGGCCCATCGTGACCAGCTGTTtcatcagaagaggaggaagaggaggaggatgctgaGAGAGCGCAgcatctcccctcctcctgtaCAAGGCAAGAGGAAGACCCCTTGTTCTACTGTGGCACCTGTTCCCCCCCTCAGCACCACTCTCACCCCTGAAGAGATGGACTGTTTCCCCCAACTGGAGGACAAGAAACACTTCCTCAACATGCTTAGCCTGTCCCATGTCACCAGCCAGCAGAGGAGAGATAAGGAAAAGATGGAGGGGTTGCTGAAGGCTATAAAGCTAAAGAGGGTGACATTGGACACCATCAGATACAACCCATTACCCCTCTGTAGCAGCACTCCTGTTCTCTCAACTGGCGACTACACACCTGACCTCCCAGCCTGCAAGTCAAACGGACTAGACTACCCAGACTCCCCAAGCCCCTTGCCTCCCTACCCCCACCATCCCGACAACCTTCACACAGACCCACTAAACCCCCAACCCCCTCCACCCCGCCACCCCCCTCCCCTGGGCCTCCACCCCGACAGGGCAGGACTGTGCGAACGTCACCCATCTAAGAGGCTCCAGGGTCTCCAGAACGGAGCGAGCCACCTTGGCCATCCTACCCAACTGAAGGTGCCCCTGGCTGGGCAGAATGGGCAGAACAAGCCCTGGGAAAGATTCATCCGGGAGGACTTCGCCCAACACTTCCACCAGGCTGTGTTGCAGTCTACCCACAAGACACTGGGTAGCTCCATATGCGTTCCGGAGTCCAGTATAAAGTCTGAGCCCTCAGCGCCCTACAACATCCCCCCTCTGAAGAGACCAGACCCCCTCcacacacctccacaccccaCCAATGGGCATCATCCCTACCCTTCTCCACCCCACCATGACCCTGATGGCGTACGGGTTGAGCGCtcagaggaagatgaggaagaggatgaggaagaaacCCCTAGGAAGTGGAAGGGTATAGAGTCCGTCTTTGAGGCATATCAGGAGTATGTGGATGagcGGGGTATGGAGAGACAGGTTCTCCACAGTCAGTGCAGGAGGCTGGAGACTCAGAACTACACTCTCAGTCTGACAGCTGAACAACTCTCACACAGCATGGCGgagctgctgagtcagagacagagggtgagagatgagagagagagactgcaggcTCAGCTAGAGCACTTCAGGAAGTGTCTGACCCTTCCCAACGTGCACTGGGGCAAGGGGCAGCTCAAAGGTCACCTTCCCCGGTGACTCCCTACCCTGCTCCTGACAgattgacagagacagacagacagactgactgacctctGGAGAGAGGAAACTGGATTGGTTCCCAGTCAGAGGCAGAGATGGAAGAGAACTCTGGActgggaaggaagagaggatggtAGAAAGGGAGGAGTGCCACACTCCTAGACTCTGTAGTGTGGTCAGACTCACCATTGGTGAAAGACTAGAAGCCTAAAAGCTGGAGGTCgtagctacagtggggagaacaagtatttgatacactgtcgattttgcaggttttcctacttacaaagcatgtagagccaaaatccctgctgcagtgtgtgcaaacctggtcaagaactacaggaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212148 lncRNA upstream 85075 77766622 ~ 77766854 (+) True G187052
TU212147 lncRNA upstream 87080 77764649 ~ 77764849 (+) True G187051
TU212129 lncRNA upstream 102499 77749023 ~ 77749430 (+) True G187040
TU212123 lncRNA upstream 105040 77745736 ~ 77746889 (+) True G187039
TU212110 lncRNA upstream 123529 77727277 ~ 77728400 (+) True G187030
TU212244 lncRNA downstream 10616 77892824 ~ 77896154 (+) True G187125
TU212257 lncRNA downstream 35189 77917397 ~ 77917604 (+) True G187138
TU212262 lncRNA downstream 41444 77923652 ~ 77923853 (+) True G187143
TU212270 lncRNA downstream 47576 77929784 ~ 77930091 (+) True G187151
TU212273 lncRNA downstream 49155 77931363 ~ 77931647 (+) True G187154
XM_021572799.2 mRNA upstream 71134 77777066 ~ 77780795 (+) False LOC110496763
XM_021572750.2 mRNA upstream 135141 77697226 ~ 77716788 (+) False nfat5a
XM_021572757.2 mRNA upstream 135141 77702227 ~ 77716788 (+) False nfat5a
XM_036956023.1 mRNA upstream 135141 77703058 ~ 77716788 (+) True nfat5a
XM_021572682.2 mRNA upstream 545463 77295087 ~ 77306466 (+) False LOC110496661
NM_001124273.1 mRNA downstream 81293 77963501 ~ 77969044 (+) True LOC100135906
XM_021572820.2 mRNA downstream 89636 77971844 ~ 78003571 (+) False fbxl13
XM_036956097.1 mRNA downstream 165165 78047373 ~ 78066844 (+) False LOC110502077
XM_036956103.1 mRNA downstream 165241 78047449 ~ 78066844 (+) False LOC110502077
XM_036956099.1 mRNA downstream 165243 78047451 ~ 78066844 (+) False LOC110502077
TU212151 other upstream 71136 77777127 ~ 77780793 (+) True LOC110496763
TU210667 other upstream 691079 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 1019429 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 1244954 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 1417314 76433817 ~ 76434615 (+) True G185462
TU212344 other downstream 165679 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 165679 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 255305 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 385081 78267289 ~ 78270045 (+) True G187320
TU213209 other downstream 602616 78484824 ~ 78506932 (+) True LOC110496993

Expression Profile