RNA id: XM_021572820.2


Basic Information

Item Value
RNA id XM_021572820.2
length 4235
RNA type mRNA
GC content 0.45
exon number 21
gene id fbxl13
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77971844 ~ 78003571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TcgtgtagttgagtagccagcctaggctACTTCTCAAATGTTGCTGTAATAGGTTTCTCCTTTGCATGGCGCTTTGTTGCACGTTTTTTTTGTAAGCAGGATAAAGTAAAGCAGATTAATTTAAATTGAATTCACAGATGTGAGCGTAGATGACTCAACTGTTGACTCGCTTATGCGTCCTATTCGGCCTGCAGTGTTTGACACATACGCTTGCCTtttagccacgttatgactgacttgtgatcattgcccttgctagtttgattgtatcgACATTCCCAACATTAGTTACAGTAGTCAGTTTTTGTTCAAAATATTGAGTTGTTGTAAGAAACTGCATCATAATATTGAGTTATTGTAAGAAACTGCATCCCGTGGAGGCAGAAAACAACGTACCAGGcaagctgtgatttacaacctgatggCAATATTTTTAGACTACCAAAATATGAATTATGCATTGAACCGCATCCATCTATTCTAGCAACAATgccttactgtatgtcatgatattttgagtcaaatagaacctatttttaaaacattttataaaaagtTGTTTTTGTAGCATAACTAGGAATGTCAcatttttgactgatattatgactgtctgtttgtttcatatttgCATATATGTCAATTCCACTTTAACcgttttaaatgtcaacttcagtAGGGTTAGGTCAGAGTTCGGACATCCCAAGGACCCAGATGAGATTTTTCCGTACACCACCTACAACATGGAATCTTGGTTACTAGGTAACGGTAAACTGTACATGGAAGTGTCCAATCAGAGAACAGACCGGGGCCTGCTTGCAAACTTCTGTGTTGACAAATATTTTGATAATTTTCtatttagctagttaacgttataTTACCTACTTTGGGATGGAGTTTTGATATGGCTTCTTTACAAAATGCTGACCCGGCGTTGAGGGAATATATACTGAAGCATTCCTTGCCCCAAATATTTCAGGCATTATTAACAGGTTTATGTGTGTCGTGTCCTGAAAGTCCATTACATTTTCTGGAAAGGAAGATTGTGTCTATTCAGGAAAACCGGGACACTGCTGAGATTGATTGGCATACATGTGTTGACGATCCAGAACAAGTCGCCGTGACCTCACTGGCAGGAAGCATGGTGCATGACATCTTTGGGAAACGAGATGATACACTGTTTCTCTCCCATTTGTTTGAGAAGGCCTACTCCTGTTACAGAATAAGTTTAACAAATATGTGCTTCAAGGCGTGGAAAAGGTTCATCTGGAATAAGCGGAAGGAGGCCAGGGAGTTGACACTGAAGATGGAGACAGCTGAGAGGCACTACATACAGAGGGGCCTGAGGGTCGCACTCTGCAAGTGGGTGGAGTGGGTACAGGTCTGCAAGAGAAGGCAGAACGATGCCATGAAAAAGATCCAGCGAGTGTGGAATGCTATCCACTGTAAGATTGTCATAGGTGCTTGGCGCTATGTGGTACAGGACTCAAAACGGACAAAGGAGTACTTTGAGAAACTGGAGAATGGTCTGTTGGAGATGAGCAGTAAGGACTCTGACGTTGCCATTGGAGAGGGACATGATGGACTCTCACTGCTACCTTGCAAGCTCTCAATAAagGTCTTCCAGAGACTAGACGTAGGAGACCTGCTGAAATGTGCAGAAGTGTGTCGGACCTGGAAGGCCATCGCTCAGACCTGCTCACTGTGGAGTCGGATCAGTTTCTCTGTGGAGAGGGACTGGATCACAGACCGCATCGTGGAACAGATCCTACAGAAGTACCGGCCATTTGTAGTTCACCTTAACATGCGTGGCTGCACCTCTCTACAGTGGCCCAGCTTCAAATGTATCAGTGAATGCAGAAACCTACAGGAGCTGAACCTTTCAGAGTGTTTCAACATTAAAGATGAGATGGTGTGTATGATTCTAGAAGGCTGCCCCACTCTGCTCTACCTGAACCTGTCCTTCTCATATGTGGCCAATGGGACTCTCAGAGAGCTCTCCAGGAGCTGTCTGAACCTGCAGTTCCTGAGTCTAGCATGCTGCCGTATGTTCACTGATAAAGGCTTACAGTACCTGGCCTCAGGGAAGGGCTGCCACAAGCTCATCCACCTTGACCTTTCTGGCTGCACTCAGATCTCAGTGGAAGGTTTCAGGTACATAGCAGCGGGCTGCCCTCTGCTCCAGCAGATAGTCTTCAATGACATGCCTACTCTGTCAGACAGCTGTGTGCTGGAGCTGGCCTCTAAGTGTCACTCTCTGTCTGCCATCTCCCTATGGGACACGCCCCATCTCTCAGACTCCGCCTTCAAAGCCATCGCTGAGGTGGCCAACCTCTCCAAGTTCAGTGTTgatgGTAACAGTCGTATGTCAGACATCAGTTGGAGGGCTCTGTGTCGTAGCTCTCCAGGCCTTACGAGACTCCATGCTGCTGACTGCCCTAGAATGACTGACTCCAGCCTAAAGTCTATGGGCGCCCTCAAAAACCTGGTCTACCTCAACATCTCACACTGCAGCAGGGTGAGTGACATGGGGCTGCGGTACCTGACTGAGGGGCCTTCTGCCTCTAAACTGAGGGAGCTGAATCTGAGCAACTGCAGCCGCATCAACGACTTAGCTATCATGAGGGTGGCTCAAAAgtgcagtaagcTGAACCACCTGAGTGTGTCTTACTGTGATAACCTGTCTAATTCTGGTCTGGAGTGGCTCAGTAgctgttcctctctcctctctctggacaTCAGTGGCTGCAACATCATGGACCAGGGGTTGATTGCTCTAGGTGGGAACCCTGGCCTGAAGAAGCTGGTTGCCTCTGAGTGTGTCTGGATCACTGACATTGGCATAGAGAAGTTCTGCAGGCAGGCGAGAGGTCTGGAGTATATTGATGTGTCTCACTGTGTAGCTCTATCTGACCAGGCCATCAAGGCTCTGTCCTTCTACTGCAGGACTATAGTCACGTTACGCATGCCTGGCTGCCCAaagATGACAGACCTGGCGGTACAGTACTTGACAGTAGGGCGTCACTTCCTGAGAGAGCTGGATGTGAGTGGCTGTGTCCTGCTGACTGATCGCACACCACGCTTCTTACAGACAGGCTGCCCACAGCTCAACACCATCAACATGGTCTACTGCAGGGGAATATCCAAgcaggcGGCTCTGAGGCTCCAGCCCTGTGTTGAGAAGTGGGAGCACAGTAACGATGACGCCCCCTACTGGTTCGGCTATGACAGTCTTGGCCAGCTGCTGCAGCCAATCGGACGACCCGACAAGATCCAGGACACCTGGGAAGAAGAGGAGCCAGCACCAAGAAACAACAAAAAGAGGAATTTGATAAAGGCCTGTGGAGAGGACTACGAATACACAgcatgaatacacacacagtcCATGCAGATAAACAAACGCACAACGACTTAgtttatacagtacacacacaccgcCTCACAATCTAAGGTAAATCAAATCCCTAACACATACACTGCACCTTACATTAACTCTAGCTCAGATATCAAGCAACGGGAAGGAATGGCCAAAGATTAATAACCAGAAAACAATATTTTGTATCTGAGAATCAATGCAGTATATACATTTATGCAGTTTATACAGAATATACATTTATGCAAAGCGTCTGCATCATACTGTTTCAAAGCTTTCTTCTATGCATTGCAACACAAGACAGATGATTGAATTTCATAATTACATCATAAAGAAAACAATTTTAGCTTGGAAATAatcattaaaaaataaatgtcctcaaTATGATTAGATTTATTTGTCTTTGTCAACACTTTTCCCAGTTTTTTGTATTTGCAGTAAATTGATCCCCCCCAAACCTATTTTGTACATTTTGCAGTTTCTACCCTGTGGTAAGAAAGTCTTAAGAGTTGTTCTTGCTTTGACTGTTGCACACACACTAACCACAGCAGTCTCTGAACTTCTCAAAAGTCCAGTTAGACTTCAAGCTCAATACCTGACTGAATATGTGAGACCTGAATGTTGTTCAGTGTTTCAATCTAAGAGCTCTGCTGATGACCACAAAGACAATGACTGAACTAGCCTGGCTGCCAGCATGCCACTATATTTCTGCTTGAGCCCTCTCGTAAAGCAGAAACATGACTGAGTTACCTCTACTAACCATGATCATGTGCTacaactgtatatagacatataaTATAGCCTGCAGTTTCCGTTATCACATATGTAGCATAGCCTTTACTTTCAGGTATGTTATTCAGTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212273 lncRNA upstream 40197 77931363 ~ 77931647 (+) True G187154
TU212270 lncRNA upstream 41753 77929784 ~ 77930091 (+) True G187151
TU212262 lncRNA upstream 47991 77923652 ~ 77923853 (+) True G187143
TU212257 lncRNA upstream 54240 77917397 ~ 77917604 (+) True G187138
TU212244 lncRNA upstream 75690 77892824 ~ 77896154 (+) True G187125
TU212347 lncRNA downstream 55797 78059368 ~ 78066821 (+) True LOC110502077
TU212353 lncRNA downstream 67671 78071242 ~ 78073026 (+) True G187221
TU212354 lncRNA downstream 69784 78073355 ~ 78073712 (+) False G187222
TU212355 lncRNA downstream 69847 78073418 ~ 78073712 (+) True G187222
TU212409 lncRNA downstream 144755 78148326 ~ 78152909 (+) False G187268
NM_001124273.1 mRNA upstream 2800 77963501 ~ 77969044 (+) True LOC100135906
XM_036956070.1 mRNA upstream 89636 77838768 ~ 77882208 (+) False LOC110502056
XM_036956064.1 mRNA upstream 89636 77851929 ~ 77882208 (+) True LOC110502056
XM_021572799.2 mRNA upstream 191049 77777066 ~ 77780795 (+) False LOC110496763
XM_021572757.2 mRNA upstream 255056 77702227 ~ 77716788 (+) False nfat5a
XM_036956097.1 mRNA downstream 43802 78047373 ~ 78066844 (+) False LOC110502077
XM_036956103.1 mRNA downstream 43878 78047449 ~ 78066844 (+) False LOC110502077
XM_036956099.1 mRNA downstream 43880 78047451 ~ 78066844 (+) False LOC110502077
XR_002469614.2 mRNA downstream 230332 78233903 ~ 78260259 (+) False LOC110496871
XR_002469615.2 mRNA downstream 230333 78233904 ~ 78260259 (+) False LOC110496871
TU212151 other upstream 191051 77777127 ~ 77780793 (+) True LOC110496763
TU210667 other upstream 810994 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 1139344 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 1364869 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 1537229 76433817 ~ 76434615 (+) True G185462
TU212344 other downstream 44316 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 44316 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 133942 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 263718 78267289 ~ 78270045 (+) True G187320
TU213209 other downstream 481253 78484824 ~ 78506932 (+) True LOC110496993

Expression Profile