RNA id: XM_036956099.1


Basic Information

Item Value
RNA id XM_036956099.1
length 4671
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110502077
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78047373 ~ 78066844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcagTCACGCAGCAGCTACGTGTGAGTGTAAAAAATAGAAACTTCCAAGATGGCCGAGTCCGTAGGTTCCATGCATTTCTCAGCTAATGGCAAAACAAATCCCCCAAACCCCTTGGTACCCAAAATACCGCCAGAGAGTCGACTACAGTCTACCAATGATGTCTACCCTCCACCGCCAAAGAAAGTCCGAATCGAGGAGAAGAGTTTGAAACACAATAAATTGAACGGGGACTTAGTGTGTGCAGGGGAAAAACACAACGGGAAGCAGAGTTATGGAAGCCCAGCGAAATGGAGTTTCGGCCCGGCCAAGCCGAGCAACTCCACCGCGCCAGCTCTCACACGAAAGATCTTCAAGATCAGCAACTTTCTCGCCTCTCCTGCGAAAGTGAAGAAACCGAATGAGAAACGCCACAAGGAAAAGGAGAAGAGCGCTAAAACGCAGAGTTCACTCATGGAGAAAGTGAACCCTGGGAGTTGCCATACAAAGACGGAGAACGACCACACTGgcaaagatgagagagagaagaaaaaggagagtgataaagagagggacagggagaagaAGAACCACCAAGTTATGGTTGCGAATGAGAGGGAGAATGGAGAGGTGAAATCTCCCCTGAACGAATCAACAGAAAAGCCAAAAGTCAACTCGGAGGACGAGCTCCTCTTGAAAAAGCTaaagaaaaagaagaaaaagaagcacAAAGACTGCGAGAGGGAAAGACGCAGCCGTCCCAAGATGTACCACCGCTCCAGTCAGACGGTGTGTTCTGGTATGTCTGTGGACCTGCCGGACCTGCTCAACACACCAGACAGGAGTAACTACAACACCAATAACAGTTTCTTTCACACCTTCCCAAGTCCCCATCAGGATCCTTccagcaccaccactactacctccgtgtccacctccactacctccatggtcagggagaggttgggCTACGGCTCCCCCCTCCACAGTGCCCAGTCCCAGGGCATGTCAGGGCTGGAGTTTGGCCGTCTGATCCACGTGGAGCAGCAGGCCAACGGAGGAGCCTCGGTGGCCCACGCCTACTGCCAGCAGCTGGCTTGTCTCTCCCCGGCCGAGATGCAGCGCTTCGCCCAGGAATTTGTCACCCTGTCATTCAGCGAGGACCAAGCTGAAGCGGCCCACTACGTCATGGGCATCATCCATGGAGCAGCCTCCTACCTACCAGACTTTCTGGACTACTTCTCCTACAAGTTCCCCAATGCGCCGGTCAAGATGGAGGTGCTCGGGAAGAAGGATATAGAGACCACCACCATGGCCAACTTTCACACTCAGGTGAAGCGTACCTACTCCCAGGGGACGTACCGTGCTGGGGCCATGCGGCAGGTCAGCCTGGTGGGGGCCGTAGACGAGGAGGTGGGAGACTACTTCCCCGAGTTCATCAACATGCTGGAGGAATCTCCCTTCCTAGAGCGTACCCTGCCCTGGGGCACGTTCTCCAGCCTGCGCCTGCGGAGCCCCACAGAGAGTGACGACGGACCCATCATGTGGGTCAGACCAGGGGAACAGATGATCCCTGTGGCTGACATTCCAAAGTCCCCCTTCAAGAGAAAGAGGTCGACCAATGAGATCAAGAACCTGCAGTACCTGCCACGGGCCAGCGAGCCCAGGGAGATGCTATTTGAGGACCGGACCAGAGCCCACGCCGACCACATCGGACAGGGCTTCGAGAGACAGACCACCGCCGCCGTGGGGGTGCTCAAGGCCGTGCGCTGCGGAGAGGGtgatgCTCCTGCCAGGGTAACCAAAGACGTGGTGTGTTTCCACGCTGGAGATTTCCCAGAGGTGGTCCAGAGGCTCCAGCTAGACCTGTACGAACCACCCCTCTCACAGTGTGTGCAGTGGATAGATGATGCCAAGCTGAACCAGCTAAGGAGAGAGGGCATCCGCTACGCCCGTATCCAACTCTACCACGACGACATCTACTTCATCCCCAGGGGAGTGGTGCACCAGTTCAAGACTGTGTCTGCTGTCTGCAGCCTGGCCTGGCACATCCGCCTCAGACAATACCACCTGGaccaagagagggaggaagagagctgTACTTCTACAAGGGCAACAAGTCAAgtcatagaggaggaggaggaagaaacagaggagagtgaggaggagtgggggaaagaggaggacacTCTTACACAGCCACGGACGCAGGTGAAGactgaggaagagggaggagaacgAACACCCGTACTGGAGCCGCCACTAGTTTGCAAGGAGGAAGAcgacacagaggaagagaagggaggggagagaggaggctgtACACCTACACTGACATCACCTTTGGTcaaggaggagagagtggaaggAAACCCACTCACAGAGACACTACTGGAAGtcaaggagagaaaggaggttGACGAGCATCACAAGATCGAAaagatggagagaaaaggagcAAGAGATGTCAGCACATCCACACAGATGGCACCACAAgtgcagatggagggagagagagatggagaagataTGGAACTCTCGAAGGCATCACAGCATGctgggataaagagagaggaggaagaaagacACCACAGGACACCTCCACAAGtccagaaagaaagagagaggggaaaggatggTAGCACAGCCACACAAACACCACCAGTCAAGAAAGGGAAGGGGAAAGATTTGGAGAAAgatggaaaagagagggagaaagaggagagggtgaaagataaggagagggtgaaagagaaggagaaagtggagaggatgaaagagaaggagaaagtgaAAGAGGAGCGGGAGAAAGATAAGAAAGAGAGGGTTAAAGATaaggacagagaaagggagagagggaaagatggagagaaggtGAAGGGGAAAGATGAGAGTGTGATGGAAAgcaccacacaaacacagacatctCCACCCATTAGGAaaaaggaggatgaggagaggaaacacacacacccatcccaACACGcccagagggaggagaagggaatgAGAGAGGCAGACACAGCCTCAAAGACACAACCTCAAATCAAAAAGGAGCGAGACCGGGACAGAGGTGGTAGTAgtacacagacacagtctcacacacggctagagagagaggagggcagagagagcagCACACATGGACATAAACCCTCAcatggaaagaaggagagaaatggttacagggaggggaaagagggtaACCCATCCATACACACTTCACACACCaagccagggagagaggaggatggaaaggcTGTCACTTCTAGAAATACACCGTCTCATGTGaagaaggaggggaagagggatagaggggtcaACCATAAGGAGGAAAGGAAGAAACCGCCCCCTGCCCCTAGCTGCCCCCCCTCGGACCACAAACCCCCACGGACGCTTGTAACCTTTGACCTCTTTAAGCCTATGGAGGCATTTCAAGCCCCGCCCCTCTCCCTGACAGACAAGTCTCACCACCACAGCGACTGTCGAGGTGCTCTCTCCAAGTCCGAGAGCCGGACGCTAGCACCCTCTAAAGGACCAAAAGTAAAGGACACAACACAGACCAAACCTACAGTTCCTTTCCAGGACACACGGCCGCAGCACTCCCTAAAACACCCCATgaaaccacacaccacacacgcacagCAGAAAGCCTTTTTATTATGAATGTGTAGTTTTCTCTCTCTTACTTAGTCTGCTCCCAGATCTGTTGCTGCTTCAGCCATACTATCATTGTCATGTCATAGTACATATACAGAGGAGTTGAATTGGCTAAAGCACATACAGATCTGGGACCTAACCCTGTTTGAAAACTTTGGAAATCCTTTTCTTTCCTCCATTCCTTGAAGTAATCACTGATCTAACACAGTTGGGTAGGTAAACGCAAATTTTCCACCACGTAGCTAATACCAATAGTCATGCCAGCATCAGATCTGAGGACGGATGCATTTCATAGCATCCGAAGAGGGCTAAAGTAAGAATTTACGCTAAGTAGCTCACTTTCCGTTTGTTAGTGAATGTACGTAGTAGGTTCTTTATATGAAAACCGTTGTGACCTGTGCACTACTTAGCTACACTATTCTCTTAAAGCACCTACTCTAGGTACTATACAACTCAGTCCCAAAACAGCCCCTTGGTTCCTTTGTCTTCTCCTAGCCTTTCCTACTTTGAAGTTTGCAGATCTGACAGGACCAGATTGGTGTACTTTGGCAATATGGTTCCCCATCTAGACAGAATTTCCTTAGTCTACACTAGACTATACAGAAGGGGGTAGTAGGGGATAGGCGTCTATTTTAAATAGAGAACTAGTCTGCCTGTATGCTATGGGGAGCTTCTACCACGTTCCTTATACCTATCCAGGCacttcagttctgccaacacagaAGGGCTCAGAGCGAGGGGTTGTTTTTGGACCAGGCTTACATGTATGATTCAATACAGGGCTGTAAATGATACGTACCGAATCTGTACAGTATGGATGTACTAGTACTGATGTGAGAAAATGTATACAGAAATGCATATATTTTTTGTAAGACAAGTTTTATTTTCCATAGAACTTATTTAtcattttatgtatttttttgttcagATGTATGTGAGAAACTCTTGTAAATACCTTTTATTCCTAAAATTAAGACTTGGTAGTGTGATTTATACTTTGACCAGAACCTCTCAATAAAAGGTTCCTAATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212304 lncRNA upstream 44546 78001956 ~ 78002905 (+) True fbxl13
TU212305 lncRNA upstream 47771 77996720 ~ 77999680 (+) False fbxl13
TU212273 lncRNA upstream 115804 77931363 ~ 77931647 (+) True G187154
TU212270 lncRNA upstream 117360 77929784 ~ 77930091 (+) True G187151
TU212262 lncRNA upstream 123598 77923652 ~ 77923853 (+) True G187143
TU212353 lncRNA downstream 4398 78071242 ~ 78073026 (+) True G187221
TU212354 lncRNA downstream 6511 78073355 ~ 78073712 (+) False G187222
TU212355 lncRNA downstream 6574 78073418 ~ 78073712 (+) True G187222
TU212409 lncRNA downstream 81482 78148326 ~ 78152909 (+) False G187268
TU212410 lncRNA downstream 81482 78148326 ~ 78149583 (+) True G187268
XM_021572820.2 mRNA upstream 43880 77971844 ~ 78003571 (+) False fbxl13
NM_001124273.1 mRNA upstream 78407 77963501 ~ 77969044 (+) True LOC100135906
XM_036956070.1 mRNA upstream 165243 77838768 ~ 77882208 (+) False LOC110502056
XM_036956064.1 mRNA upstream 165243 77851929 ~ 77882208 (+) True LOC110502056
XM_021572799.2 mRNA upstream 266656 77777066 ~ 77780795 (+) False LOC110496763
XR_002469614.2 mRNA downstream 167059 78233903 ~ 78260259 (+) False LOC110496871
XR_002469615.2 mRNA downstream 167060 78233904 ~ 78260259 (+) False LOC110496871
XM_021572888.2 mRNA downstream 167060 78233904 ~ 78266800 (+) False LOC110496871
XM_021572895.2 mRNA downstream 167060 78233904 ~ 78266800 (+) False LOC110496871
XM_021572904.2 mRNA downstream 167060 78233904 ~ 78266800 (+) True LOC110496871
TU212151 other upstream 266658 77777127 ~ 77780793 (+) True LOC110496763
TU210667 other upstream 886601 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 1214951 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 1440476 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 1612836 76433817 ~ 76434615 (+) True G185462
TU212400 other downstream 70669 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 200445 78267289 ~ 78270045 (+) True G187320
TU213209 other downstream 417980 78484824 ~ 78506932 (+) True LOC110496993
TU213267 other downstream 512528 78579372 ~ 78580062 (+) True LOC110497055
TU216437 other downstream 2688297 80755141 ~ 80756647 (+) True G191052

Expression Profile