RNA id: XM_036956142.1


Basic Information

Item Value
RNA id XM_036956142.1
length 7957
RNA type mRNA
GC content 0.56
exon number 26
gene id LOC110496855
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78151133 ~ 78218616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCTATCTTGCCGCTAGTAGCCGAATGAATTTGGGGGAGTGCCTGGTTTGAAGCTAGCAAACTGCCGTCGTTAGTGGGAAGGAGGCGGTTCTAGTCCCCCGCTAGCACGAGAGAAAGACCCGCCTCATCTGTAGAATGAACGCTGCCAGTCTGGGAACGTTCCGACAGTAATTATTATACCTCAGTAATTCCAACCGGCTCCTTTGCTTTGGTAAACGTGTTAGAGTTCTCACAGCTTGAAGACTACTTATGGATGGAAACTTGACCACACGACGTGACACTGGATCTCAGCTGGGAGTGTGTGGCCTGTCGTTGCCTGCACAGTGAGGCTTGGTGCCTGGAGCTGAGTCTAgctctttccccctcccctctgGTGGCTCCTTATGCTGGATTGCAGCTGTACCCTGTGTCTTGCAGGATGGATGGTGTGGATCTAAAGGGTCTTGTGTGTTGGCAGCGCTCCCTGTTCTGTGACAGTGTTCTCTTCTTTTCTATTTACAAAATAACACCCCCCATCCTCCACCCAGACTCTGAGCCCTGTATACCTACTAACTGTATTTAAGCAGCAGTCACACGGGTAGGAATAGGAGAGGGAGGTTTGCAAAGCAAGCTCCTGTTTTAATTGGTCAGTCTGACCACATAGATTTCCATTTCTTTCCTAAGCCTTTATGGAGGAAGTTTGAGTTTTATTTTCTCTGTTGAATCATATCCGCTCACTATCGTTGGGGGTGGTGGGATGTCGGAAAAGCCCAACAACAAGATGGTTAAGTTCCTGACTCCCCTTCCCAAGAGTGGTAACGCAAACAACGGGTCTGGCTCGGACTCGCTTGTTGGTGAACGGATGGCAGCGGAGGTGAGGCGGCGCCACCACACCATGGAGCGCGACCGTTGCGCTGCAGAACATCGAACATTCTTCCGTCGCAGCGTCATCAGCGACTCCAACGCCACAGCCCTTGACCTCCCCTTACCGAGTAAAATCCCTGTCCTTGCACCTCTGGTACCCCGCGTGCGAGATGTCGCGCCCCGGCATTCTGGTGCACTGCCCACCCCAAGACCTGCACCCCGTGTGACTGTGAGGGAGGAGTTGGCTGAGTGTGAAGGTGGATTGAAGGTGGATGTAGTGTCTGTAGAGCAGAAGGCTGCTGTACTACAGGATATCTGTGATGGGGAAGCAGTGGTGTCTCAGCAAGCAAACAGTCTAGCTGCCCAACCTCTGAGCCAAACAACAGAACCTGAACCTGAGAGTGAGGtgaaggagagtggagagagtgaagaaggagaggggagggaagcagataaggaagagaaggagaaagcaCGGGTAGAGGCTGAACTGAGAGAGGCGGagaagaaggtgcaagatgaCATTGAGGAAGCCGAGACGAAAGCGGTGGGAACGTCACCGGATGGGCGTTTCCTCAAGTTTGACATTGAGATTGGACGTGGTTCCTTCAAGACGGTCTACAAGGGCCTGGACACAGAGACCACAGTGGAAGTGGCATGGTGCGAGCTGCAGGACCGTAAGCTGTCCAAGTCGGAGCGCCAGCGGTTCAAGGAGGAGGCGGGCATGCTGAAGGGGCTGCAGCACCCCAACATTGTCCGCTTCTACGATTCCTGGGAGGCCCCTGTTAAAGGCAGGAAGTGTATTGTGCTGGTCACAGAGCTCATGACCTCTGGAACACTCAAAACGTATCTGAAGCGCTTCAAGGTCATGAAGATCAAAGTTCTGAGGAGCTGGTGTAGGCAGATCCTGAAGGGCCTTCACTTCCTCCACACCAGGGCCCCGCCTATCATCCACAGGGACCTGAAGTGTGACAACATCTTCATTACGGGGCCCACAGGCTCCGTCAAGATAGGAGACCTGGGATTAGCAACACTCAAGAGGTCCTCTTTTGCCAAGAGTGTCATAGGTACCCCTGAGTTCATGGCGCCTGAGATGTATGAGGAGAAGTACGACGAGTCAGTGGATGTGTATGCCTTTGGGATGTGCATGCTGGAGATGGCCACCTCAGAGTACCCATACTCCGAGTGCCAGAACGCTGCACAGATCTACCGCAGAGTCACCAGCGGGGTGAAGCCGGCCAGCTTCGACAAGGTGGCGATCCCCGAGGTGAAGGAGATCATCGAGGGATGCATCCGACAAAACAAGGACGAGAGGTACTCGATAAAGGACCTGCTGAACCATGCCTTCTTCCAGGAGGAGACAGGGGTGCGTGTTGAGCTGGCCGAAGAGGACGACGGGGAAATGGAGGCCATCAAGCTTTGGTTGAGGATAGAGGATGTCAAGAAGCTGAAGGGGAAATACAAGGACAACGAGGCCATTGAGTTCTCCTTCGACCTCAGCAAGGACGTCCCTGAGGACGTGGCCCAGGAGATGGTGGAGTCTGGCTACGTGTGTGAAGGGGACCATAAGACCATGGCTAAGGCCATCAAGGACAGAGTTTCCCTCATCAGCAGGAAGCGAGAGCAGAGGCAACAGgtgagagaggaacaggagaagaggaggctggaggaggagCAGGGCCAGCAACAACAACtactgcagcagcagcagggccAACCTCAACCAGGGCTCCAGCCCGGCACAGAGGCCCCCCAACCAGCCCAGCCCGTCCCTCAGGCAGCTCCCCAGCCAGGCCAACAGGCTGCCCCCTACATCCCCCCACAGCCCACCCAGCAGCCAACCCAGCCCATGGCCCCCTACATCCCCCCTCAGACAGCACAGCTGGGGCCACAGGGGGTTCCCTATATACCCCAGTCTACAGGGCAGCTCCCAGTCACTGTCCCAGTATCGTCCCAGGTTCCAGTCCAGGTTCCAGTCCAGACAGAATCAGAGAGGCCAGAGGTGGACCAGTACCCACAGCAGACGGAGACTGCCAATCAAATGACAGATAGTGCTCAGGGTTCCTCCGTCCTTCATGAGACCCACCCGGTTCAGCCGGTGATGTCATACACCTCTCTTCCCAGTCAGCAGCCTCAGCCACAGGCCCCTCCCCCTGTCCAAACAGACCTATCACGTCAGCCGCAGCAGACCATGGTGGTTCCTGCTGCTCAGCATACCACTGTTGCCCCTGGGGCTCCAAGCTCCCAGCCTGCCCCTGGGGCCCCACAACAGTACGGAGGTTACTACCACCCACCACTCCCCCCTCAGGTGCCCCCCCAGCAGGTGACATTGCccccctctcagcccatccctccTCTGCACCTCCAGCAGCCACAGCCAGAGGGCAGCGATGCACCTCAGAGCTCAGCACTACCACCTCTCCAGCCTGGAGTCCGGCAAATACAGGCCTCTGTGAGTGTATCCCAGCCGGCGCCAGCCGAGCAGGCAGCAGGTCCGACAACACTTGTCCCTCAGTCTGTGGAGAGTTGCCTGTCAGACGCAGCGTCAGGTCTGAGTGACGGCTATGAAGGGGCATCGGGTGGTAGACACGAGGGGCGCTCCATGATCAAGCGGCACCAGCGGCGTTCCGTACGCAGCCGCTCTCGGCATGATAAGACCGCCAAGGCCAAGCTCAACGTCCTCAATATCTCCAACATGGGAGACCGGGTGGCAGAGTGCCAGCTGGAGACTCACAACAGGAAGATGGTGACCTTTAAGTTTGACCTGGATGGAGATAACCCAGAGGAGATTGCACAGATCATGGTGCTGAGTGAATTTATCCTGGAGAGCGAACGTGAGTCGTTCATCGAGCAGGTTCGTGAAGTCATCGAAATGGCGGACGATAGAGAGGGCATGAAGGAAGGCTACGCTCAACCACCCTTTACACAGATTGTGGTGGATGACCCCTCACAGCAGCCTGACATGCCCACTCATCTGCCTGGTGTTCCTCCCAGCGTTGcagctcaggtagtccactctgcAGGCCGAAGGTTCATTGTCAGCCCTGTCCCAGAGTCCCGTCTGAGGGAGCAATTCTTCGGCCCTCCATCTGCTAACACCTCGTTTGGGGATGAGCCCCCTCAAGGCCACCTCCAGCAGGCCTTAACTGAGATGAGGCAGCCGCATGGGGAGGGACGAGCCACCATGGGCCACCCAGCCGAGCCAGACACCAGCATAGTCCCCTCCTCCCTGCGCccagcctcccctctctcccaccctcaccAAACCTTGGCTCCCCCAGAGGCTACAGTCCCCACCAACACTAGCTTCTCCACCCTGCCTCCTGTCTCAGTCATCCCCTCTGGGTCCTCCACTCTTCCCCCCTCCACATGTCAAGTTGCAACCGGGAGGGTGTCTCCAACCCCAGTTCCAGCCCCTGCATCTGCTACCACTGATCCCACCCCACACCCCCAGCCTGACTACCAAGCTGCCCCCTCTCAGCCTACCCCTGCCCAAATCACATCCCCTCCTCCAGCTGCTCCCCAGGCCACCCTGGCCCCTGTCCCCCCAGCTGCAACCCCCCAGCTGGGAAGCAGCTCTGCCCCTTTCCCCCCTGTCTCCGGAGCTCCACCCAGTAACTCTGGGACTGTGACCAGCTCAGAGCAGCAACCTGCTGACCTTGTTCCTATTCCATCCTCTCAGCCTATCCCTGAGTCCATACCTGTCACTCAGCCCACCTCCTCCCAGCCTATCCCTGCCTCTGTCCCTGTGGCACAGTCTGCAATGGCACCCACCCAACTTCCACCCTCTACCCTGCCCTCCCTACCGTCCCAGCCAGGGGACCCAGATGGGGTAGAGTCCCAGTCCAAGGTCCCTGGTATAGATGACATACATGCCCTGGATAAGAAGCTGCGCTCCCTCTTTAAGGACACATCCTCTGCGGACACTGAGACCACCTCCCCCTCCACAGGGACCATCTCCCCTCCCCCCGGGGCGGCCCCGGTGCCCCCCTCCAACCTGTCTCTCACCGCCGGGGGACAGGGAGCCCAGGGCCCCACCGCGACCCCAGGACAGGGCCTCACACCAGGGGGACATGCACAGACACCTCCAGCCAAGCCTGGTCAAGCCACCAGTACACAGgtGTATCCTGTTGGCTCCGAGCAGGCAGGCACCCCTACCTCCGAGCAACTGCCTCCATTCCCAGGACCAAACCAGtCCCAGCAGCCTGTGGGTAGTCTGGACGGCCAGCTAAGGAGAGCTCTGAGCCCAGAGACCATCCCAGGGAGCAGTGAGGCAGCCTTGCCCTCCACAAGGGTCGTTGAACTGGGACGCTTCCAAGTCTCCGTTGCAGCAGACGCTAGCACCGGCAGCACTCCTGACCCCTCCAACAtcgcctcctcttcctctctcaccccatcctcctcatcctcttcctcttcctcttcctcctcttcctccctctccagcccGGAAAACACCCTCCAccgctcctcctccctcctttccaaaGGGGTCCGGAGAGGAGACTCCGTAGATGCGCTCTCTTCTGTCCCAACACAGCCCACCACCATCGGACGCTTCCAGGTGTCTACTAGTGCCAGCACTGGCCCCAGCCCTAATTCTGTCTCGAAGGTGGGCCGTTTCTCAGTGATGCCAGCCACAGTCAATCCCACGACACCTCCGGGGTCTAGCCCCTCACATCAGAACGGCCCTTCCTCTTCCACCTCTGACCTCCGTAGCTCCGCCCCTGGCGTGAACAGTGGTTCATTTAACCATTACATGACCAGCGACAACGAGGACGACTCGGGGCCTGAGGACGAGGCCTTCCAGAGCGAAGTCAGCTGCCTCCGAGAGAAaCATATGATAGAGATCCAGACCCTCCACTCACGGCAGAAGGAGGAAATAGATGCTCTGTTCACCAGGCTGGGTAAACCTCCTCCTTCAGCTGTCCTCTCCCCCGCTATGGCTGGGGGCAGACGTAGACCCAAGACCAAGGCCAACAAATCAGCCCGCAGCAGCGCCCAGGCCAGCCCCCAGCACTCGGGAGCCCCAGTCACAGGCCAGATCCCCCCAGCGTCCCCACCTAAGCAGACGTCTCCCCCCACTGCAGCGCTCTCAGACAGCCAGACTTCCACCATGGGAGTGAGTGGGACCAGTTCAGACAGTGGAGTGAACACCAGCCAGTCTCAGCCATCAGGTCCTAACATAGCGCCGGCCCTAACACAGCACCGAAAGGGCACGTTCACAGACGACCTGCACCAGCTTGTTGACAACTGGGCCCGAGACGCCATCAGCCTCTCCCAGGGCAAGAAAGGACCCAAGGGAACAGCCCAGGGACCCGGACATGACATCCCTCTACATATCCCTCCACAAGCAAACATGAGCCGAAAGTTTTCTGCCCCCGGCCACCTGTGCCCTACCCTCCCGTCTACCACCCTGGCAGGTGCCCACCTCCCCATTACCACTAACCCCTCCAACCCACTCTGCCAGCGTCAGGGCTCTCTAGGCCCCCCTCCCCAGGGATTTGGCTATGGCACAGCCCCCTACAGCGCCCCCCAGTGGGCAGGACCCTGTCAGGTGGGTCTCCTGGCCCAGTACCAGGCCCCTTCCGTGGCCTCAGCCCCCCTTCAGCAGGCCTTCCACATGGGAGCCACCCAGAAACCTGTTAGCAACCCTGGAGGTCCCAACCTGAGGCCCACATAGCCCAGTCTGCAGCCCTGGACCTGGGTTAGTAAGGCTGGGCTGATAGGAACTGggggcagggaggaagagagccATAGGAGGACAACTGCTATCTGACGTTCTATTTCACTAATTGGTGAGGTGAAATAAAGAGGATGAAGTgaaaatggaggagaggaggctgtggTTCAGTCCTGTCAGACAGAGAGTGATGTCTGTCAGTTGGAGGGAGAGTGCAATACATACCCACAGCACACAATCACACCTTCACCCGTACCAGGGCCCAGTCTTTTCTGCCAATGGCTGTGGAAGCAGGCTGTGATTGACATTTGGGTTTGTCCAATGAAAGCTATGGACCCAAGGGCACAACTGGCAATGGCCAAAGACATCTGTTGAAAGCACCATTGTGATCTCATCATTCCCTTAAACAGGAGGGTAGGGTGGGGGAAGTCTTAATCACTTCTTGACTGTAACTGGCCTTAAGCTTACCTAGGACAGAGTTAGCAGATGGAGAGAACccccacaaacacatacacatgcgCCTCCTAGCACTACTGTGATTGGCTGAGATTGAGGCATTGAATGGTATGAGAAACTGATTAATTGTGGGTAACAAGTTTGTATAATGAAAGGAGAGTAAGATATGTAGAGAAGCAAGGAGGTGGAATGAGAGAAAGATAGTGAATGGAAGTTGGTTAGGTAGGGTTATAGTGGATAGTGTTTGGCTAGTGTTACTCATTTGATCACCATGCAGTAATAGCAATGTGAGGAAAGGAGTGAGCCCCCTGTGTAAGAGTGGCCTTAAACCCCCAAACACATACACATTGTCTTTGTATATAGAGATATTTCTTGTCCTAAGTTATGGTTATATTTGATTATCTGTCCCTCTGAGCTGGTCTGATGTGATGTTCTGCCTGACTGGGTGTGTTAGCTTCTTATGAGACCATCACCTAATGTTAGTGTGAGCTAAGTAACAGACCTGTCTGTAGATAGTTTATTAATACCTACTTCACCTGTCTTGTCCAGGCTTTGGATTTACCCTGAAGTGACTGTATCCATGAGTGTTTTAGGTTTACGCCTTAGCGACTGGTTAGGCTCAGTGGTTTGAGTTGTTGGCTTCAGCTACTGTGATCATTTGGTTTTCGACCTTAGCTACTGTGTCAGTCAGTTGTCTCACACCTCACCACCTGGTGTACTGTAGTCAGACTCTGCTAAGCAAGGCTATGGTCCTTGGTACAGTTCTGTTAGAAAGGAATTACATTCTTGATACATAGGGTCATCTTGCGAGTGAACGGTGCATGGTGTTCACACACAGACCTCTAAGCAATGTCAACAAAAATGTCTTTAACCTTATTTCCAGTTGTCATCTTTCAGAATCATGACAAATTGTCTGGGGTTTCTGTGGCTTGTTTTATGTGtatattttaaataaaaatacaaaatgttcTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212953 lncRNA downstream 74747 78076139 ~ 78076386 (-) True G187767
TU212951 lncRNA downstream 79003 78071317 ~ 78072130 (-) True LOC110496818
TU212891 lncRNA downstream 221875 77929050 ~ 77929258 (-) True G187708
TU212870 lncRNA downstream 269589 77881000 ~ 77881544 (-) True G187687
TU212869 lncRNA downstream 269670 77881000 ~ 77881463 (-) False G187687
TU213086 lncRNA upstream 78075 78295820 ~ 78296236 (-) True G187880
TU213306 lncRNA upstream 85429 78303174 ~ 78304525 (-) False LOC110496911
TU213304 lncRNA upstream 124324 78342069 ~ 78344271 (-) True LOC110496911
TU213299 lncRNA upstream 132235 78349980 ~ 78353910 (-) True G188067
TU213349 lncRNA upstream 154114 78371859 ~ 78372265 (-) True G188108
XM_036956120.1 mRNA downstream 8665 78129577 ~ 78142468 (-) True LOC118942057
LOC110496836 mRNA downstream 47857 78079493 ~ 78103276 (-) True LOC110496836
XM_036956111.1 mRNA downstream 71965 78071724 ~ 78079168 (-) False LOC110496818
XM_021572849.2 mRNA downstream 76677 78071724 ~ 78074456 (-) False LOC110496818
XM_021572842.2 mRNA downstream 77127 78071724 ~ 78074006 (-) False LOC110496818
XM_021572919.2 mRNA upstream 49326 78267071 ~ 78270220 (-) True LOC110496900
XM_021572933.2 mRNA upstream 83828 78301573 ~ 78309309 (-) False LOC110496911
XM_036956197.1 mRNA upstream 83828 78301573 ~ 78341576 (-) False LOC110496911
XM_036956249.1 mRNA upstream 148371 78366116 ~ 78393936 (-) False LOC110496976
XM_036956246.1 mRNA upstream 148371 78366116 ~ 78393964 (-) True LOC110496976
TU212754 other downstream 447644 77702899 ~ 77703489 (-) True G187579
TU212651 other downstream 680036 77470393 ~ 77471097 (-) False G187490
TU211715 other downstream 979494 77169963 ~ 77171639 (-) True LOC110496628
TU211248 other downstream 1827243 76321807 ~ 76323890 (-) True si:dkey-234i14.6
TU211217 other downstream 1857741 76274974 ~ 76293392 (-) True G186197
TU213521 other upstream 398837 78616582 ~ 78617307 (-) True G188257
TU214411 other upstream 1005485 79223230 ~ 79224998 (-) True G189093
TU214582 other upstream 1148104 79365849 ~ 79366569 (-) True G189256
TU215157 other upstream 1542294 79760039 ~ 79760627 (-) True G189806
TU216232 other upstream 2334382 80552127 ~ 80552484 (-) True G190857

Expression Profile