RNA id: XM_021572888.2


Basic Information

Item Value
RNA id XM_021572888.2
length 6311
RNA type mRNA
GC content 0.49
exon number 21
gene id LOC110496871
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78233903 ~ 78266800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttttttagtgTAGCTGACGAGACGCTGCTGAAGAAGAAAGCCGCTGGTTGTGTTGGCAAAAAATAGGGTAAAATCGGATGGAGGTATGCAGAAGAAATAAGGGAAAATGTCCGTATATGGAGCCGTTTTCCATTTGACGCAGGATACAGCAAACTGACTTGACCCCATCGGACATAGCTACAGCAAAATCAGTTTCCTGTGTGTGGACTCTCTGAGTGGCTGTTCTCTCGCTCAAAGAACAGCTGTCACCCAGTCCCTTCTGAGAGTGAGTGAGCATGAAGAGAGCTCAACAATTTCACATGAATCAAGCGCTCACTTACTCCAGTTGAAGCCGGAACAGAGACACGTCAGCACAAACTCACAGATCTGCTGTCaaaatctctcacacacacactaggcaaaGCTACATCCTCACATTTCAGACACTGCACCTCTTCATTCCCACCATCAATACGTTCACTCCTCTGCTTCAGTGAACATGTACGGCAGCTCCCGTTCCGTGGGCAGAGCGGATGCCAACCAcagcggagggagagatggggggagcaGCCAGGGTTCGGGTCGCTCCCCTCATCTCCCCCGTTCCCCACGGATGGGCCACCGTCGCACCAACAGCACGGGGGGCAGTGGAGGGGGTCCAGGCGGAGCGGGGGGTAAGACCCTCTCCATGGAGAACATCCAGTCCCTCAATGCCGCCTATGCCACCTCAGGACCCATGTACCTGAGCGACAACGAGGTTGCCATGTCCGACCACGTTAACAAGAGTGGTCGAGAGATGACCACAATGGGTCGACAGAGGGTGACCTACGGGTCAAGAGCAAGCgcaggagggggtggaggggtggcagcTAGCACTCCCAACATCGCCACATCTGCCCAGGCCAACGCTGTGCTCCCTGGGGGAATGATGGCAGGTGACGCCCTGGCTTTTGGGGATCACCACATGGCCTCCACGGTCCCTCACTCCCTGAGACAGGCCCGGGACAACACCATACTGGACCTGCAGGCCCAACTCAAAGAGGTTCTGCGTGAGAACGAGTTGCTGCGTCGTGAGGTGGAGGTTAAGGAGAGCAAGCTGAGTTCCTCCATGAACTCCATCAAGACTTTCTGGAGCCCTGAGCTGAAGAAGGAGAGAGCCCTAAGGAAGGACGAGGTGTCCAAGATCACTGTCTGGAAGGAACAGTACCGCGTGGTGCAGGATGagacccagcacCTCCATATGACGGTCCAGGCCTTGCAGGATGAACTGAGGATACAGAGAGACCTGAACCAGCTGCTTCAGCAGGACCCTGCCAGCCAAGGTCGTGACCTGGCCCTGACCTCTGAACCCACGGAGGAGAACTACCGTCGGCTGCACGGGGACCACGAGCGTCAGGCCAAGGAGCTGTTCCTGCTCAGAAAGACCCTGGAGGAGATGGAGCTGAGGATAGACACCCAGAAACAGACCCTGGGCGCCAGGGATGAGTCCATCAAGAAACTACTGGAGATGCTGCAAAGCAAAGGGCCGTCGGCTAAGTCGTCAGAGGAAGACCAGGAGAGAACCAGGAGACTGGCTGATGCTGAGATGCACAGACACCATCTAGAGTCCCTACTggaccagagagacagggagacgacTGCTCTACGAGAGGAGCTGCACCGTCGATACGAGGGAACCCCAGAGTCCACAAAAACCAAGGCTCTACAGACTGTCATCGACATGAAGGATGCTAAGATCAACTCTCTGGAGCGAGGTCTGAgggacatggaggaggaggtgattatGTTGAAGTCCAATGGGCTGCTGAGCtgtgaggagagacaagaggagatgaAACAGATGGAAGTCTACCGCAGCCACACCAAGTTTATGAAGAACAAGATGGACCAGGTGAAGCAGGACTTGTCCAGGAAGGACACAGAGTTGCTGGGTTTGCAGACCAAGCTGGACACTTTGACCAACCAGTTCTCTGATAGCAAGCAGCACATCGAGGTCCTCAAGGAGTCGCTGACTGCTAAAGAACAACGAGCTGCCATCCTACAGACAGAGGTGGATGCTTTGCGTCTGCGTCTGGAGGAGAAGGAGACCACACTGAACAAGAAGAGTAAACAGATCCAGGAGATGTCTGAGGAGAAGGGCACGCTCAATGGAGAGATCCACGACCTCAAGGACATGCTGGAGGTCAAGGAGCGCAAGGTCAACGTCCTGCAGAAGAAGattgAGAACCTGCAGGAGCAGCTGAGAGACAAGGAGAAGCAAATGAGCAGCCTGAAGGAGAGGGTCAAATCTCTACAGGCAGACACCTCTAACACAGACACTGCTCTCACCACCCTGGAGGAGTCCCTTGCTGAAAAGGAGCGTATCATCGAGCGTCTgaaggagcagagagacagagacgacaGGGAGAAGACTGAGGAGATCGACAGCAACAAGAAAGAGCTGAAGGATCTGAAGGAGAAAGTCAGTCTGCTGCAGGGAGATCTGTCTGACagagagACTAACCTGTTGGACCTGAAGGAGCATGCGTCATCCCTGGCTTCCTCGGGGCTGAAAAAAGACTCCAAGCTGAAGACTATGGAGATCTCTCTGGAGCAGAGGAAGGAGGCGTGTCTCAAACTGGAGAACCAGCTCAAGAGGGCCCAGAATGCGACGTTGGAGGCCAAAGCGAACACAGAGCTGTCGGAGCGCATCACCTCCCTGGAGAGGGAAGTTAGCCGACACCGAGAGGATTCTGGGAAGGCTCAGGCGGAGGTGGACCGACTGCTGGAGAtcctgagagagatggagaatgagaAGAATGACAAGGACCGAAAGATCAATGagctggagagtCAGTCCTCCAGACAGACTAAGGACCAGAGTAAGAAGGTGGCATCACTGAGACAAAAGGAGCATGTGGAGAAGAGTAGGAACGCCCAACTTGTGGACGAAGCCAAAAAGAGAGAGGACAACATCTCCGAGAGCTCTCAACAGGTCAAGgACTCCCTACGGTTGAAGACGGAGCGTATCGAGGAGTTAGAGGAGGCTCTGCGAGAGAGTGTTCAGAtaacagcggagagagagatggtgctgGCACAGGAGGAGGCTGCCAGGAACCACCAGGAAAAACAGATTGAGGAGCTGCTGGGCGCCATGGAGAAGGTGAAACAGGAGCTGGAGTCCATGAGGGCCAAGCTGTCGTCTACCCAGCAGTCCCTGTGTGAGAAAGAGGCCCATCTGACCACGCTGAGGGCTGAACGCAGGAAACACCTGgaggaggtgctggagatgaAACAGGAGGCGCTGCTGGCAGCCATCAGTGAGAAGGATGCCAACATCGCCCTGCTGGAGCTGTCATCgtccaagaagaagaagacgcAGGATGAGGTGGCTCtgctgaagagagagaaggaccgTCTGGTACAACAGCTCAAACAGCAGaCTCAGAACCGTATGAAGCTAATGGCAGACAACTATGGGGACGACCACCTGAAGACCGCCCCCGACCAGACCAATCACAAACCTTCTCCAGATCAGATGAtcccccctctcctgtccctgAGTGAAAATCGCAGTAAGCTGAAGCTCTACATCGACCACCTGACTGACCTCTGCCACGACCGAGACCCCAGCATCCTCAGTGACCTGACCCCGCCCGCCCACTATCACCACGCCAACCCAGCAGCCTGGGAGGAGGAGCTACACAAGTTGACTCTGGAGCAGTTGGAACTGGAGTTGGAGTTGTGTGAGAAGGAGAGTGGGGAGCTACAGGAGTATGCCAATTCAGTGCTGCAGCAGATCGCTGACTACTGCCCTGACATCCTGGAGCAGGTGGTCAACGCGCTGGAGGAGTCCTGCTGACCGCTCACCTTTACCACCTCATGACCCCGCATGAGCTTCAGGCAACCTTCCTCCCATTTATTCACGCATGATCAGGGCAGAGGGAAGACTGGGCGATTGTACTGCACCCCCACATGCCCAATTATCATTCCTGGGGATATTGACCAGCCTGaggacatgatgatgatgatgaagaacaGCCACAAAGTGGCCTAATGGTGGAGGGATGTAGCGGCTTGCCAGtcatgggttgtgttcagtagggcacgtCATACCAAAACGTTTTGAAAGAGAAAACACAGGTAGCACTTTCAAAATGTTTTCTCTGGATTCATCCCTACTGACACAACCATTGTTTTCTCTTTGAATCTAAACCAGTGTTTTTTCTGAATGGTGGAGTGTCGTGGAATAAAAATATTTAGGAACCAGTGATTtaaaccactttttttttttgctaatttatttccTTTGATTGGCCTTCAGAATCTCCTATGTGAGTTACTGGACAACAAACCTTTTCCCTCAACTCCCCACCTAGATCTATTGCGAGAAACCCCTAGCTGAGTTTTGCTGACTAAATGTAAGGCTTTAGCTATGGCTGACGTACTGCGTGTTCTGTGAACGGCTCTTAAGAAAGAGGGAAGAATCCGAACTTGAATTTCCACACACATTTCCTATTGACATCAATGTCTAATTTATGTGAAACTGAGGTACACTAGCTTCtcgagttagggagagagagagagagagaagttgatTTGAATGGTTTTGCACACAGCACTCCCTTCTATATGAGGTATGCAATGTAAGTTTATTTTCAGTCATAGCCAGCATCCCAAATGATACCCAATTCCCCACATTGTATACTTattttgtcaaaagtagtgcactaaacagaATAGGGGGTCATTTAGGATGCTACCATAGAGTGGCCTTTGAGCGTGCACAGGGATCAGTACTGGACCTAAATGAGGGACCTTTTTTATTCCTCAGTTCTATTGGTGCTACAGCATGGCATAAGACATCAATAAAGATCTAATCCACCAGTCACATGATCTCATCCAAAGTTTCTATAGATATGACTTTTAAAAACTATaattgtttcatttttttttattgaattacATTCCCTTAGATGTAAATGTTCAGATGCCCCCGTTCACTGCATCTGTCCAACGCTTCAGAGCTAACTAGGGTTTGTAATGTAATGAGATTATAGGGAATCCTAGTTAAAGACATGACGGTCACTTCTCAGTGGGTTTGGACTTTTTAAATCAGTTTGTAAATAACTCATCAAATACGTACAGTGACTATATAAAGGTAACCCAGTGGAAGATGTTGTGaattctgtttaaaaaaatatatatacaagtgAGAAGCTAAAGCAGTGCAGTCCCGTGTGTCTCAATTTGTCTGCAGACAAGATGTATTTGACAGTACTGCCATAAGTCGCAAAGTCATgttctataaatatatatacatatacaaagTATGATGTTGACCATATGGATATATGCATTGAAATGTTTGCAGAATCGTGAGGAGCAAGTCCCTCTGAACAAAGTTGTGGATCGTGTCCTCAGCTAAAACTGGAGAAATGTGTCAAATGTTTAATGTGTCAAATTAACTACAAACATTTTCAAACCGTGACTGTGTAGAGGGAGACtactttttttttgcatttatttCTAAATTgttcattttttatatatacacttTTGCCACATATGTAAACCTTTTACTCTTAGGttccagtgttttgttttttcatgTTTGAGATGTGAATGGGTGTTTGTGGGAATGACGCTCCCTAGACTGTGTTCCTCTTATGTTCTCTCACATAGTAGTCTGACCCTTTAGGACCGAGTGGTCTCCAAGCATGTTTGTCCTGTGGCCTGATTAGTGAGAGTTGTACTGTATAGAACAGACATCACTCTCTGCCAGTCTGGCATTTTGTAACTGCTATATACAGTGCATCCCTATGCCAATCAGTCAATGTTTGAACAATAATAAAAACCTACAGTTCAGCTtgctctccaggaccagagttgGAGACTAGGTTACTGTTCAGGTTATTTTATCCTGCCTCTTGTCTATAGGCCCTATGATGATACTAATTTTTAATCACATCCTGGCAATCCCAGAAGTAATGACTGATCTGAAAAAATCACGAGGTCAAACCAAAGGTTTCCACTCCTCAGCTTTCACCTATCCAGGTCGTTAGAATATAGTTTGATTCTAGGAAGGAGGAACAGGGCCCTAGCCTGTGTATCCCTGCCTTTGCCTTAATGTCTGTGGACTTACCATTCTGTGATGACTTTGTTTTTCATTTCGGAACAGTGCTTGCTGTTAAAGGGGCTACTACTACCAAAGTCATGGTTCACTTTTTTTTTTGCGTTTAAAGTTAATGTACTGCCTTCTGTGTTGATGAAAAAAAGTTAaactatgtaaaaaataaagatgaGTATTTGCATTTTGTATATGTATGTAAATAAATATATCCTATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212409 lncRNA upstream 80995 78148326 ~ 78152909 (+) False G187268
TU212410 lncRNA upstream 84321 78148326 ~ 78149583 (+) True G187268
TU212354 lncRNA upstream 160192 78073355 ~ 78073712 (+) False G187222
TU212355 lncRNA upstream 160192 78073418 ~ 78073712 (+) True G187222
TU212353 lncRNA upstream 160878 78071242 ~ 78073026 (+) True G187221
TU212483 lncRNA downstream 3676 78270476 ~ 78270781 (+) True G187333
TU212486 lncRNA downstream 5533 78272333 ~ 78272606 (+) True G187336
TU212488 lncRNA downstream 6910 78273710 ~ 78273909 (+) True G187338
TU212491 lncRNA downstream 9863 78276663 ~ 78277026 (+) True G187341
TU212493 lncRNA downstream 12918 78279718 ~ 78280007 (+) True G187343
XM_036956097.1 mRNA upstream 167060 78047373 ~ 78066844 (+) False LOC110502077
XM_036956103.1 mRNA upstream 167060 78047449 ~ 78066844 (+) False LOC110502077
XM_036956099.1 mRNA upstream 167060 78047451 ~ 78066844 (+) False LOC110502077
XM_021572820.2 mRNA upstream 230333 77971844 ~ 78003571 (+) False fbxl13
NM_001124273.1 mRNA upstream 264860 77963501 ~ 77969044 (+) True LOC100135906
XM_021572942.2 mRNA downstream 81280 78348080 ~ 78352645 (+) False LOC110496927
XM_021572938.2 mRNA downstream 81281 78348081 ~ 78352645 (+) True LOC110496927
XM_036956224.1 mRNA downstream 127308 78394108 ~ 78451563 (+) False lrrc56
XM_036956238.1 mRNA downstream 127309 78394109 ~ 78451563 (+) False lrrc56
XM_021572971.2 mRNA downstream 127311 78394111 ~ 78451563 (+) False lrrc56
TU212400 other upstream 56321 78137513 ~ 78177583 (+) True G187260
TU212344 other upstream 185104 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other upstream 185104 78047887 ~ 78048800 (+) False LOC110502077
TU212151 other upstream 453111 77777127 ~ 77780793 (+) True LOC110496763
TU210667 other upstream 1073054 77147653 ~ 77160850 (+) True LOC110502025
TU212466 other downstream 489 78267289 ~ 78270045 (+) True G187320
TU213209 other downstream 218024 78484824 ~ 78506932 (+) True LOC110496993
TU213267 other downstream 312572 78579372 ~ 78580062 (+) True LOC110497055
TU216437 other downstream 2488341 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 2498532 80765332 ~ 80766714 (+) False G191057

Expression Profile