RNA id: XM_021572919.2


Basic Information

Item Value
RNA id XM_021572919.2
length 3150
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC110496900
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78267071 ~ 78270220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTGTAACATGTCTAACTTTTTAATATTTGTGTTGTTAATTTGGACCTATTACATTTATTACGTTTTCTCGTATTAATGTCAGTCGTTTATGTGAATTGTTTTTGTACCCCCCAAAGCAAGGAAGTGCTGCTGACTGTTTCTGCGTAGCAAGCTAGTTTGAAATGGTTGGTCAGACAAAGGCAGCACAGGAAGAATCCCACAACAGAACCGAAATGCTAATAGAAACGTATTTTAATCGATGACACAGAAGAAACAGAGACTGCGGTTTTCATCAATACATTTCTACTTTTTGTTTTGAAAATGAACGACCGACTGGATCCGTTTGAAGAACGACAGCGGTCATCTGACTTGAAATTGGGTAGAGTCGCCTGACCGTCACTGTTTTCCGCCTTTAAGtacgctaactaacgttagctatcccAAGTTTTTGTAggacgtagctagctagctatctcatTTGATTAGAATAATTATAACCTAGCTATTATAACACAACCTCCACACTTCTTGTTGGATATGCATTATGAAGAGATGGTTGGACTTTGAACAGGTTATTTTCCTGAGTAACATTacctaatttagctagctaacagttagcTAGCCTACTCGAATAAGCGGATACCTGGTTAGTTTTATCTAACCTCTCCCTTTCCAAACATGTTTGAAATGGAAACGCACATATCTGGCCTCTTCCCGGAAATTTTAGCTATAATTTTCAGTTACTTGGACGTAAGGGACAAAGGTAGGGTTGCCCAAGTGTGTGCGGCCTGGAGGGACGCTTCGTATCACAAGTCTGTGTGGAGGGGGGTGGAAGCGAAGTTGCATCTGCGGAGGGCCAACCCGTCCCTGTTCCCCAGCCTCCATACCCGAGGCATTAGGAAGGTCCAGATCCTAAGCTTGCGACGAAGCCTAAGCTATGTAATCCAGGGGCTGCCAAACATCGAAAGCCTTAACCTATGTGGCTGTTTTAACCTCACGGACAACGGCCTCGGACATGCGTTTATTCAAGACATCCCGTCCTTGCGAATCCTCAACCTCAGCCTTTGCAAACCAATCACAGACTCAAGCCTGGGTAGGATTGCCCAGTATCTCAAAAACCTGGAGGTGCTGGAACTTGGAGGCCTCAGTAACATCACCAACACAGGCCTTCTTCTCATTGCCTGGGGCTTGCACAAACTCAAGAGCCTTAACCTGCGGAGCTGCAGGCATGTGTCAGACGTCGGCATTGGTCACCTGGCTGGGATGACCCGAAGCGCTGCCGAAGGCTGCCTTTCCCTGGAGCAGATGACACTACAGGACTGCCAGAAACTGACAGACCTGTCCCTCAAACACGTCTCCAAGGGACTAGCCAAGCTCAAGGTGCTCAACCTCAGCTTCTGCGGAGGCATATCGGATGCAGGTATGATCCATCTGTCGAACATGAATCACCTGTCAAGCATCAACCTGCGGTCCTGTGACAACATCAGTGACATGGGCATCATGCACCTGGCCATGGGGTCTCTGCAGCTCTCTGGCCTGGACGTTTCCTTCTGCGACAAGATAGGTGACCAGAGCCTGGCCTACATCGCCCAGGGGCTGTACCAGCTCAAGTCTCTGTCCCTGTGCTCCTGCCACATCAGTGACGACGGGATCAACCGGATGGTGCGCCAGATGCACGAGCTCAAGACGCTGAACATTGGGCAGTGTGTACGCATCACTGACAAGGGGCTGGAGCTGATTGCTGACCACCTGACGCAGCTCACTGGTATCGACCTGTATGGGTGTACCAAAATCACCAAGCGGGGCCTGGAGAGGATAACGCAGCTCCCGTGCCTTAAAGTTTTAAACCTGGGACTCTGGCAGATGACGGAGAGTGAGAAAGTTAGGTGAAAGCCAAACTGGGATGAACTGCCAAGTGGGGTTTTCACTGTAATATTTTTCATCCACAGAGATTACCTGAGCGGAACAGCTCGTAGACTATTACATTATCTTTAATAGCTACAATACTGTGACTTAATTTTAGCAGAAGGAAACACTTTTTAAACATTCACTGTCACAGCAATATTCCACCCCTTATTTTGGTAAAATTGCTTTCTTATTTCAGTGTTAACTATCCTGTCCCTGTATCACATCTATAAGGTTTTGACTAGCTACCTCATCCATTCAAGAAACTGTACTGTCTGGGacacaaccacactacacagCATCTTTCCATGCAAAACAAACTCATTTTTAAACTTTCCCTTTAACTGTTTACCAGTATTGATGATAGACATGACTCATGCAAAATATCTCTGTTCAAACACAGTCCCTAACACTGCACAAAGGCGTTAAGGCCTTGGATTGAAGGTGTGAGCAGGGGATTTCTTCAGCTGAAGTATTTTGCTTATGTTGATGAAGGTATTTTTTATGAATGGCTGTAGTCCAGAACATTGTACTTCAAATTgaagtgttttgttttttaattgGTAGTTCCCATTCCTGAGGAGTTACACTGTATCAAACATTGTAATATGCCTTACTCCAGCTTGTCAACATGAACAGTGTGGATATGACAGGGGTAAACTGCCTTTTCCTCCTGGGGACTTTAGAATGGAGAGTGGAAATAGACTTTGGGCTCAATTCAATCTTTATCGCGGAAGTTGTTACAGCATGATTGAAATTTCAAGGCACTGTTCCCACGTtagtggagactgcattcacggtaaacgctgcaaaTGTCGGCGCAATCGGAAATAACCTTTAAATCTTTTAGCAATTTAATGCTTCAGCGATAGATTGAATAAAGCCCTTTATCTTGTCCGTGGTTATCAAGAATATGTATTTCTGTATGCAACATATCAATAACCTACATATTTTCTCCTGTAAAGCCTCCAAGGAAAGATATTGGAGTGTTAAGGCTAATTTAAAATGTTTATATTCATACAATAGTGATATTTATTAATAAAAACGCACAATGTTTATTGGGGGGAAATTCTTTAATTTGAGTTCTGTCGTCCAGTAAGTGGTTTACCTATTGTAAAAACAAGGCAGAAGGTGCAGGGTGTTGAACATTATTGCTCTATTATATGCCTGGTCCAGAAACAATTATGACCAGATTGACTATAGGTTTGAGATTGCACAACCAGTTTGACAAAATTGGGCCACTCTGTTTCTATCCCCTTTGTG

Function

GO:

id name namespace
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG:

id description
K10280 FBXL14; F-box and leucine-rich repeat protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213003 lncRNA downstream 69798 78138268 ~ 78197273 (-) True G187809
TU212953 lncRNA downstream 190685 78076139 ~ 78076386 (-) True G187767
TU212951 lncRNA downstream 194941 78071317 ~ 78072130 (-) True LOC110496818
TU212891 lncRNA downstream 337813 77929050 ~ 77929258 (-) True G187708
TU212870 lncRNA downstream 385527 77881000 ~ 77881544 (-) True G187687
TU213086 lncRNA upstream 25600 78295820 ~ 78296236 (-) True G187880
TU213306 lncRNA upstream 32954 78303174 ~ 78304525 (-) False LOC110496911
TU213304 lncRNA upstream 71849 78342069 ~ 78344271 (-) True LOC110496911
TU213299 lncRNA upstream 79760 78349980 ~ 78353910 (-) True G188067
TU213349 lncRNA upstream 101639 78371859 ~ 78372265 (-) True G188108
XM_036956134.1 mRNA downstream 48455 78151133 ~ 78218616 (-) True LOC110496855
XM_036956126.1 mRNA downstream 49326 78151133 ~ 78217745 (-) False LOC110496855
XM_036956142.1 mRNA downstream 49326 78151133 ~ 78217745 (-) False LOC110496855
XM_036956147.1 mRNA downstream 49327 78151133 ~ 78217744 (-) False LOC110496855
XM_036956120.1 mRNA downstream 124603 78129577 ~ 78142468 (-) True LOC118942057
XM_021572933.2 mRNA upstream 31353 78301573 ~ 78309309 (-) False LOC110496911
XM_036956197.1 mRNA upstream 31353 78301573 ~ 78341576 (-) False LOC110496911
XM_036956249.1 mRNA upstream 95896 78366116 ~ 78393936 (-) False LOC110496976
XM_036956246.1 mRNA upstream 95896 78366116 ~ 78393964 (-) True LOC110496976
XM_036956322.1 mRNA upstream 290758 78560978 ~ 78565956 (-) True LOC110497044
TU212754 other downstream 563582 77702899 ~ 77703489 (-) True G187579
TU212651 other downstream 795974 77470393 ~ 77471097 (-) False G187490
TU211715 other downstream 1095432 77169963 ~ 77171639 (-) True LOC110496628
TU211248 other downstream 1943181 76321807 ~ 76323890 (-) True si:dkey-234i14.6
TU211217 other downstream 1973679 76274974 ~ 76293392 (-) True G186197
TU213521 other upstream 346362 78616582 ~ 78617307 (-) True G188257
TU214411 other upstream 953010 79223230 ~ 79224998 (-) True G189093
TU214582 other upstream 1095629 79365849 ~ 79366569 (-) True G189256
TU215157 other upstream 1489819 79760039 ~ 79760627 (-) True G189806
TU216232 other upstream 2281907 80552127 ~ 80552484 (-) True G190857

Expression Profile