RNA id: XM_036956197.1


Basic Information

Item Value
RNA id XM_036956197.1
length 3800
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110496911
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78301573 ~ 78344271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACCAGTCCAGTTATGGCAGAGAAATCTGAACAGACTGATGCTCCTTCTCCATATAAAGACCTAACCTTACCGGTCATGTTTCCCAAACTGCATACAGAAGATGAGGGTGGTGCTACTACCTTCTCATCGTCGACATGCAACCCCAACCTGTGGAATATGTTGCATGCAGCCGAGACCAGATGGAGCGAGCAGTCTCAACCGTCCAACGGAAACGGGGCCGAGGTGTCCGTTGGGGCGGGAGAGACAGTGATCGAAGCGCTAAATATGCAGAGGcaaaTCCAGTTTGCTGATCAGAAGCAGGAGTTTAACAAACGTCTCACTAAGACCGGGCGTCGCTCCCTGTCCCGCTCCCTCTCCCATTCCTCCACAGACAGCTACAGCTCAGCTGCGTCGTACACAGACAGTTCAGAGGATGAGATGTCTCCTAGAGACAGGCAGCAGAGGAGCTCTAAGGGACATCAAGACTTCTGCATCAAGAACATCAAACAGGCCGACTTCGGACGCAGGGAGATCGAGATTGCTGAACAAGAGATGCCAGCTCTGATGGCCCTGAGAAAGAGATCAGGGGGCGAAAAGCCGCTGGTTGGTGCTAAAGTTGTGGGCTGCACTCACATCACCGCTCAGACCGCTGTCTTGATGGAGACTCTGTCTGCGTTGGGGGCTCAGTGTCGCTGGGCAGCCTGTAACATCTACTCCACCCAGAATGCTGTGGCTGCAGCTCTGGCTGAGGGAGgctTCTCTGTGTTTGCATGGAAGGGGGAGTCGGAGGATGACTTCTGGTGGTGTATTGACCGCTGTGTCAGTCTGGAGTCCTGGCAGCCCaatatgATCCTGGATGACGGGGGAGACCTGACCCACTGGATCTTTAAGAAATACCCCAACATGTTCAAGATGATCAAGGGAATCGTGGAAGAGAGTGTCACAGGGGTTCACAGGCTGTACCAGCTGTCCAAGGCAGGGAGACTGTGTGTCCCTGCTATGAACGTCAATGACTCCATTACTAAACAGAAGTTTGACAACCTCTACTGCTGCAGGGAGTCCATACTGGATGGaTTGAAACGCTCTACAGATGTGATGTTTGGGGGAAAGCAGGTGGTGGTGTGTGGCTATGGAGAGGTTGGTAAAGGTTGCTCTGCCGCTCTGAAGGCCATGGGCTCAGTAGTGTATGTCACGGAGGTGGACCCCATATGTGCCCTGCAGGCCTgCATGGATGGCTTCAGACTGGTCAAGCTCAATGAGGTCATCAGACAGGTGGACCTGGTCATCACCTGCACAGGCAACAAGAATGTGGTAGCAAGAGAGTACCTGGACAGGATGAAGAACGGCTGCATCGTCTGTAACATgggacactccaacactgagaTAGACGTggTGAGTCTGCGGACCCCAGAGTTGACCTGGGAGAAAGTGAGATCACAGGTGGACCATGTCATCTGGCCCGATGGCAAGAGAATAATCTTACTGGCTgaaggTCGTCTGTTGAATCTGAGCTGCTCCACAGTGCCCACCTTCGTCCTCTCCATCACCGCCACCACACAGGCACTGGCTCTGATAGAGCTTTACAACGCCCCAGAGGGACGATATAAACAAGACGTCTACCTTCTGCCCAAAAAGATGGatgaGTTTGTGGCCAGTCTCCACCTGCCAACGTTTGATGCCCACCTCACAGAGCTGACGGATGAGCAGGGCAAATACCTGGGCCTCAGCAAGACCGGACCCTTTAAACCAAACTACTACAGATACTAATCTATGGTAGTGAAGACCAAAGACGTTCCATACCATCCCAAAGACATATGTGGCTCAGAGGGAAGGAGGACCAGGAGACCTGGCTCAGATTTGTGTTTGTGGGGGAACTATAGCCCAGCACTGACGGGTAACACCACAACCATGATGTCTGACTGACCTTTAACCCCTGTCCTCTGACCTCTGCTGAGCCATCTGACCTCACTGGAGGGCTGTCATTGGTCTGAGAGAATTGATATGCTGAGAAGCTCTTTTTTTAATGTACATAAAGTATTATTGTGAACAGAAGCAGAAATGATAATTTCCCATCAGATTCATATCCCAAGGCCAGACTCAGTTGCCGGGTTTGAGTTTTCTATTTTCCATTATTTGTATCTGTTGTCTGAAGGGGCAGAGTTTGGAGGAGGTGTATGTTATTTAGCAGAATCTTACAAAAATATCAAGTTGTAACAGAGGAACACAGATTATCTAATAAACATATAAATACATCTTATTTTCAATCTTTCCAAAGATATCTAAATAATGTTTAAACTTTCTGAATGTAAACAAAGCAGATAAGTAATAACAAATAGGTTAAAGTTTACCAAATGTTACATTTTACCATATTTTTTTCTGCGTCTTTTCCAGATAAGATAAAGTTGTGACCTACCTGCTAGTCAGTCTCATTAACTCTGCTCTCCTCAAACagcgtgtctgtctctgtagttcTAACTATGCCCAATAGGTGGTGCAATGAAGCTAGTCAAAGAAGTGTAGCGGCTGTTCTGTGGATGTTTCTGGAGTTTGGttactcgcacacacacacacacttacaggatACAGTGGTAGATggacctgtgtgtttgtttaggtCTTCCCTCCTGACCTGTAGATAATATGTGGGGTGAGGAGATAGACTGATCCAGAGTCATTACTTTACTGTAAGTGCCCTTCTGGATGGGAGAGGTGATAGCAGGGCCAATGTTATGACCTGTCCTGTCTTACTATACCTCCTGGCCCGTCCTAATAAAATACATAGTTGAATtaaactttctttttttttaaactttttgttTGCTATAACACTGATTTATGTATGACATTAAGGCCATTTAAAGTTTCAATTACCTATAAAAAAGGAATTGTCTTGTTAAATTAAATATGGCTCAAGTAATTATGACTGACAGGGTTGTACACCTATCATGTGCATCATGAAGTCACGTCTCTTTTTTTACCGCCATTTCGAATTAGTAGTGGGTGGGGCGTTAGTTAAACACAACAGTGTGCCTCAATGATCAGTAGGCCTGGATACCTTCAAAATAGATATTAGAAATTGGTTTAAAAAGAATGCATCATCTGCTGCAACAAGTGCCGCTCAAATTCCACTCGTCCAAGCCTCTGCTACGGTTGCTGTCGATCACGGCAAGAGTTATTTTTATTAGTATTATAATGTTTCTTAGGACGAATGAATAATGGATTTCTTTGTGATGGTGAATATGAAATGGATTTATTTTTAAAAAGACGCCCACCCACGTCCCACACTCCCACTCGTCAATTGTGGTGCCGGCATTAGCGCAGAGGTGTAAAAGACTTATGCCGGCAATATGTGGtaaaaatgttgcagttttttaCATGCAGCATACGGAAATTCTTCTGTGAACTAGAAGCAAATCTTTTGGGATGATTCCCAATCTACTTAATTACTGTTTTAATTATTCTTGCCTTGGTTTGCACATGCAATCAAAGATTTGTATTAGCCTATTATAAAGGATATGTCGATATGAACAGCTAAGAGGAGTGTTGTTAGTAAAATAATTTACATTTCTTTGAAATCTTACTGTATTTCGCCATTTTATGTAGTTAGGCCTTGCATACTACAAATATACGGAGCTATCCATAGTGCTTAAGTTAGAGATCAATGTACCATTAATGAGGAAGTTAATGAGGAAGCCTACAGATCACCAACAGGCCAAATCAGCACGTAGAACATGGCCAGGAGTATGTAGGCCTATGTTGTGCCTTTTATTATGTTTTTGGAATGCTCTATAACAATGGGAATTAAAATTCCAACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213086 lncRNA downstream 5337 78295820 ~ 78296236 (-) True G187880
TU213003 lncRNA downstream 104300 78138268 ~ 78197273 (-) True G187809
TU212953 lncRNA downstream 225187 78076139 ~ 78076386 (-) True G187767
TU212951 lncRNA downstream 229443 78071317 ~ 78072130 (-) True LOC110496818
TU212891 lncRNA downstream 372315 77929050 ~ 77929258 (-) True G187708
TU213304 lncRNA upstream 493 78342069 ~ 78344271 (-) True LOC110496911
TU213299 lncRNA upstream 8404 78349980 ~ 78353910 (-) True G188067
TU213349 lncRNA upstream 30283 78371859 ~ 78372265 (-) True G188108
TU213459 lncRNA upstream 192944 78534520 ~ 78534808 (-) True G188210
TU213499 lncRNA upstream 236841 78578417 ~ 78580100 (-) False G188238
XM_021572919.2 mRNA downstream 31353 78267071 ~ 78270220 (-) True LOC110496900
XM_036956134.1 mRNA downstream 82957 78151133 ~ 78218616 (-) True LOC110496855
XM_036956126.1 mRNA downstream 83828 78151133 ~ 78217745 (-) False LOC110496855
XM_036956142.1 mRNA downstream 83828 78151133 ~ 78217745 (-) False LOC110496855
XM_036956147.1 mRNA downstream 83829 78151133 ~ 78217744 (-) False LOC110496855
XM_036956249.1 mRNA upstream 24540 78366116 ~ 78393936 (-) False LOC110496976
XM_036956246.1 mRNA upstream 24540 78366116 ~ 78393964 (-) True LOC110496976
XM_036956322.1 mRNA upstream 219402 78560978 ~ 78565956 (-) True LOC110497044
XM_036956334.1 mRNA upstream 369322 78710898 ~ 78853463 (-) False LOC110497066
XM_036956343.1 mRNA upstream 369322 78710898 ~ 78853465 (-) False LOC110497066
TU212754 other downstream 598084 77702899 ~ 77703489 (-) True G187579
TU212651 other downstream 830476 77470393 ~ 77471097 (-) False G187490
TU211715 other downstream 1129934 77169963 ~ 77171639 (-) True LOC110496628
TU211248 other downstream 1977683 76321807 ~ 76323890 (-) True si:dkey-234i14.6
TU211217 other downstream 2008181 76274974 ~ 76293392 (-) True G186197
TU213521 other upstream 275006 78616582 ~ 78617307 (-) True G188257
TU214411 other upstream 881654 79223230 ~ 79224998 (-) True G189093
TU214582 other upstream 1024273 79365849 ~ 79366569 (-) True G189256
TU215157 other upstream 1418463 79760039 ~ 79760627 (-) True G189806
TU216232 other upstream 2210551 80552127 ~ 80552484 (-) True G190857

Expression Profile