RNA id: XM_036956246.1


Basic Information

Item Value
RNA id XM_036956246.1
length 4405
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110496976
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78366116 ~ 78393964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcTCACCGGGGCGGTTCATACAGGGCTGGGCGTGGGCTCCAACAGACTTGACTTCATCCTCTCCGTCTTCGAAGCACATTGTGCGCTATGATTTAGCCTCGCGTACAACATTGAACGAATGCTGTAAAAATTGGGCTAAAAAGTATGAGTTCTGGAATAATAACATATTTATGTTGTCGAACACTGTTGTGAGACATTCGTTGAGAAAACGggcctaccatttgtatttctatTCTTGGAACACTCAGAAGCTACTGAGTTGAAACATTGTTTCCAGTAGACCAAGTCACGCTCCTGATTATTGGGTAGAGCTCTGCTTGTTcagtgtgtgtggggAGCAGTGAGGATGACTGAGTACaagttggtggtggtgggggctgGAGGTGTGGGGAAGAGTGCACTCACTATCCAGCTCATCCAGAACCACTTTGTGGATGAATACGACCCCACCATagagGACTCATACAGGAAGCAGGTGGTGATTGATGGGGAGACATGTCTGCTGGACATCCTGGACACTGCAGGTCAGGAGGAGTACAGCGCTATGAGGGACCAGTACATGAGGACAGGGGAGGGCTTCCTCTGTGTCTTCGCCATCAACAACACCAAGTCCTTTGAGGACATCCAccagtacagGGAACAGATCAAGCGTGTGAAGGACTCTGACGACGTGCCCATGGTCCTGGTGGGTAATAAATGTGACCTCCCATCGCGTACCGTGGACACGCGGCAAGCACAGGAACTGGCCCGCAGCTACGGAATTCCCTACATCGAGACCTCTGCCAAGACACGACAGGGGGTGGAGGACGCCTTCTACACGCTAGTGAGAGAGATCAGGCAGCACAAGCTGAGGAAGCTCAACCCTCCGGATGAGAGTGGACAGGACTGCATGAGCTGCCGCTGTGTGGTGTCGTGATGGAGGTTACCAGTTCGGGGTGAGGAGTGGACCTAGTGGCAGAATGGACTTAAAGAATGATGGTGGAGGATGAAACAACAACTAACTTTGAAACGGAAGAGTACAGTCTAAGAAAAGCAGACACACCACCAGGCTGACTGTACCATAGACATTTGGGAGAGGGGGATCTTGCCCCTGCCAGGCCAGGCTAGACTAGGCTGTCTGTCCCCTCTTTGAGTCCGCCTGCCAGAGCAACACCACTAATGACTGTTTCTCACCAGTGTGATCATGCTGGGCAGCTCCAATGAGTTCCTGCTAAGTTATTGTTTTACAGTCTCAACACTGGTCTTAAAGGGAGGTGTCACCAATCCAATCCCTGGTGAGTCCCCTTCACCAACACCTCAAAACCCTGATTTTACATTTGACCCCCTGGAAAGACTGGACAGTAGTAGCCTAAATCCCCATCCCTAATTTAACCTCCCCCCGCCTCCTTGTTCCTCTCTAGAGGGGCTCTGCAGTAACCTCATTATTACGGATACAAGTATGGGGATGGAGCATGACAAAAGACACGCCAGATAGGATTTCTTTTTTTTACGGTTAGTCTAGCTGTCAAACCTTTCTTTTTTTTACGGTTAGTCTAGCTGTCAAACCTTTTTTTTACGGTTAGTCTAGCTGTCAaacctttcttttttttaaagactttTTTGTGATCGAAGGTTTTGAAGGTGATCATACTCGGCACTGTAAAGTAAGCCAGGATGTTTATTTTGTGTGATGGGTTGTTGCTATTTTAAGACCTGTCACCGTGAGGAAGTCCTTATTCGGGGCCCTTACGAGGGCATGGCTGTGGATCAGACCGATGGATGGACTCATTTTCCCAGAGTGCCATTGCCTTCCCCCACAgaagtgtgtgtgcgcgcactcgTCAGTGTGCTAAAGAGTTCCCTTTGTGGAGTAATATAGTACTAGATATTGTAGGTTCTGGTGCAATAGGAATGTTTACTGTCTTACTAGGTTTAAGAATTGGGAATAAACCATCTCTCTCATCCCTATTTATTATTTGCTTGTATTTCTTGGGTGGAGAAGGGAGGGGTACATGAGTGATGTTTTACTTGCTGTTGCCTTCAAGGTTTGGCTGAATGATAGTTTGAGGGATGGGAGACTAACGTCATTCCTTGGTCCATGCAGTGCCATTATTTACCATGGGATGGTTATGTAGTGAAAGATTATTCTTGCACAGCCTTTCAGGGAAGTGGAACAAATACCCTTTGAGATTGTGCTATTTTAAAACACTGTTGGCATCCATTTCTTTCCTATTCCTTTGCTTAGACAACAGTATGTTGTTTAGTATAGTTTTACATTTCTAGATTGCAAGTATCGGTCCTCACTGTGTTTTTAAGGCTCAGGAAACGGGAATGTCTAGAAATGTCTCGCCTTTGTATCTTATGTTCCAGGATGAAATCTGTGAAATTGAAATTCTAATGCACAAGACCTGCCTTAAATGAATGGTAATATGTGGGATAAAACTGTTTTGGCCTCCTAAAATAAccttctctctcattctactCGCTACTGCCTCCTCAGTTGGATCTTTGGTTCCCTGAGAAGATAATTTAATTCAAGCTGGTCATGTACGAGCCAACTTCATTTGCAAGAAAAGTCAGAGGAAAACGTTCTTCACTTTAGGGGTTCGCTTGTGATATTCCtcaattacatttgaatcatttagcagacgctcttatccagataTGTCTGGATATTGAATGGTGTAGATAGACCTACTACCTTTTGCGCTCTATACAACACTAACCGCAGCATAGGGCTGCCAATACAAATGAacactgcttggtcctgtttAACTTGCCTTATTATTTGTTAGCTAGTACTTCATGCCTTAGAGTAGTAAGTTTGCCTGAAGCAGGTGTTTCTGTGGTGGTCTGTCTGCTTTCCTCTGTGGATAACTGTTGTGAATCACTGGTGGTGATTGGAGATCTGCTCCTTCTGGGATTTGTTTATCTTTCCCTTGATTAACAGACATGAGGAAAAACGAACTCTGAAACAGTCCAACCAGATGAGATTCTGTACAGCATGCCCTGTCTGATTAGCTAatggtttttgtgtgtgttagtcCAAACTAAGTTTGCCATAATTAAACAATCTTAATTCAATAAGTGTTCTTTTTACCTTCTAAGAGCCGCTGGCTTTTTATTTCCCCCTCCTGTTTTTGAAGGTACTTACCCCCACAGTTCAGCCACAGTGACCCATATACTGTAGGACATTGTGATGCCTCATTAGACTTCAGTCAAAGCCAACACCTTGACGTCTTGTCTAGAAGATAGACCTTAACATAATCACTTTATTCTGTCGCTAGAAATGCTTAATTTCACTGACTTTTTGCTGCTATCATACATGTGAGTGGTGTTCCTTAGTATACGTACAGTACGTGCTCTTGTATGTGGTTTTCCAGGAGCTGCCCCCCTCCAACAAACACTCTTCTGAATTACCCCATCTTACCTGAACACAATTACACCAGTTGGCAATTACACCAGTAAGAGATTTTTTGACCTGCTCCCTCCACCATGAGGGCCCTTCAGTCAGACAATACTCCCCAAGATCATCTCACCTTTCCTGGGTTGCTACCCTTCATATGTTGGACCCAGGGgatgaatgggtctgaatatgAAGATACTGCACACAGGCTTGACCGTTACCTCTGACAACAGCCACTATACCTCTTCTGGCTCTGTCTGGGTGGAACACCTCTACTGTGTTGTGTGGACCACAGATTATATTCTGGAGCTCTGAGGGATTCAGGGATGATGTTGGTCTTCTGTGTGTTTTATTCTCAATTTATTGTTGATGATTTTGGGGTCTTAACTGTGAAAAAGTGTGTTTTTAAcagaaaatattatttgtgttgtATTAGTATAGGGCACTCCATAACCATAAAGTAAAGATACTCTGTACCTTGAAAAATAAATAGCCCATCTTAAACAAATGTAGGTCTTTGTCCCCATAATGATCTACTGTgtaatgttaaacaaatcagaccTGCTATGTAACTTGTTTATCAAGTAGACCTCTGGTGTTAGATGTGAACTGTACAGTTGTCTGAACTATAGTTGGCTGTTATATTCTACATCTCACACAATGTCCCTTGTCTGTCTATACTCTGTGCTTTGACTGACTGCCAGTTATGAGCACACATCTAAAGGTAAATGTTTAGAAATTGGACATCAGTTGTCATTGAGGAATACAAGGCCAGCAGGCCATGTCTGAAGGGAGGGGAGACTTTTTGGGGGTCAAAAACATGGGGAAAACCCCCCAGTGTCCAAGGACTGAAACCAAAAAGGGCTTGCTTCTCCCTTGTAAAACTGTAGTGTGAACATGTGAGAGAGGATGTGGGATTGGAAGTTTGATTGTGAAAATAAACTATTTAAGATGTATTTACTCTAACAAAATGGCAAATGTGCAGCAGGGCAGGAATAAAGGTGTCAAGATGAACTTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K02833 HRAS; GTPase HRas

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213299 lncRNA downstream 12206 78349980 ~ 78353910 (-) True G188067
TU213304 lncRNA downstream 21845 78342069 ~ 78344271 (-) True LOC110496911
TU213306 lncRNA downstream 61591 78303174 ~ 78304525 (-) False LOC110496911
TU213086 lncRNA downstream 69880 78295820 ~ 78296236 (-) True G187880
TU213003 lncRNA downstream 168843 78138268 ~ 78197273 (-) True G187809
TU213459 lncRNA upstream 140556 78534520 ~ 78534808 (-) True G188210
TU213499 lncRNA upstream 184453 78578417 ~ 78580100 (-) False G188238
TU213500 lncRNA upstream 184526 78578490 ~ 78580141 (-) True G188238
TU213503 lncRNA upstream 190456 78584420 ~ 78585120 (-) True G188240
TU213547 lncRNA upstream 240631 78634595 ~ 78634833 (-) True G188283
XM_036956197.1 mRNA downstream 24540 78301573 ~ 78341576 (-) False LOC110496911
XM_021572933.2 mRNA downstream 56807 78301573 ~ 78309309 (-) False LOC110496911
XM_021572919.2 mRNA downstream 95896 78267071 ~ 78270220 (-) True LOC110496900
XM_036956134.1 mRNA downstream 147500 78151133 ~ 78218616 (-) True LOC110496855
XM_036956142.1 mRNA downstream 148371 78151133 ~ 78217745 (-) False LOC110496855
XM_036956322.1 mRNA upstream 167014 78560978 ~ 78565956 (-) True LOC110497044
XM_036956334.1 mRNA upstream 316934 78710898 ~ 78853463 (-) False LOC110497066
XM_036956343.1 mRNA upstream 316934 78710898 ~ 78853465 (-) False LOC110497066
XM_021573089.2 mRNA upstream 532487 78926451 ~ 78996507 (-) False LOC110497088
XM_021573104.2 mRNA upstream 532487 78926451 ~ 78996508 (-) False LOC110497088
TU212754 other downstream 662627 77702899 ~ 77703489 (-) True G187579
TU212651 other downstream 895019 77470393 ~ 77471097 (-) False G187490
TU211715 other downstream 1194477 77169963 ~ 77171639 (-) True LOC110496628
TU211248 other downstream 2042226 76321807 ~ 76323890 (-) True si:dkey-234i14.6
TU211217 other downstream 2072724 76274974 ~ 76293392 (-) True G186197
TU213521 other upstream 222618 78616582 ~ 78617307 (-) True G188257
TU214411 other upstream 829266 79223230 ~ 79224998 (-) True G189093
TU214582 other upstream 971885 79365849 ~ 79366569 (-) True G189256
TU215157 other upstream 1366075 79760039 ~ 79760627 (-) True G189806
TU216232 other upstream 2158163 80552127 ~ 80552484 (-) True G190857

Expression Profile