RNA id: XM_021572963.2


Basic Information

Item Value
RNA id XM_021572963.2
length 2686
RNA type mRNA
GC content 0.53
exon number 12
gene id lrrc56
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78394108 ~ 78451563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTAATCGATCAATACGATAACATATTGACTACATATCCCAAGGGGCAAAGCCAACTTTATCATCGTTTCCAGGAAGTTGGGTGCGTTGTCAAGCAAACTTGTGCGTGTCTTTGTAAATGCTCTGAAGAATGTTCACTTCATAAGGTGTCTGTGAGTGATGATTTGTTCCCAGGACTCAGCGAGGGTACTGGTGACTGAGCTGAGTGGGTCTGGTCAGATGAACCCAACCCCTGCTGCTTATGAGGACTCTGACATGCAGAAAGCCTTGTCGGGAACAGAAGACCTAGTTCAGGTCACTTCCCTGGAAATGTGTGTGGACACTCAGGAGAGCACTCTGGGCAACTTTGGTGCCTACTTGCCCAAGCTGGTGCAGCTGAAAATGAACAACAGTATGATAATGTCAGTGAGGGACCTGGGAACCACGCTGTCCCATCTGCAGGTGCTGTGGATGTCTCGCTGCAACCTGGCAGACCTGGATGGgattccctccttctcctctctcaagGAGCTGTATGTGGCCTATAACAGTGTGTCGGACCTGAGTCAGGTGAGCATGCTGGAGAATCTACAGCTGTTGGACCTGGAAGGGAATGATGTGAATGACCTGGTGCAGGTGCAGTACCTGGGCCTCTGCTCCCAGCTCCGCACACTTACCCTAGAGGGAAACCCCGTCTGTATGTTCCCCCACCCCAACGCCACACAGgaggaggaggaggggtactgCTACCGGTCATTGGTGAGGGAGCTGGTCCCACAGCTGCGTTACCTAGACGACATGCATGCCAGGGAGGAGGCGGGGTCTCGCTCTAGCAGCTCCATGGGGGAAGACTGGGCCCTGCTCAGAGAGTCTTTTAAAGACTGCAGCTCTACAGAGACagctgaggAGAAGAGagcagccagtgtgtgtgtctactccaGACCCAGCTCTGGCCAGCACCTAGCTAGCAGCCTCTCCAGTTCCCGTCCCTCCAGCCGACCAGTCACTGCCAGGCCCCTCTCAGCAGCCGGCTCCACACCCCTCTCTGGGTCGCGACCCTTATCAGCGGCTGGGTACAGAGCCCTCTCCCCTCCTGGGTCCAGATCTGGTTCTGCTGATGCAGATCCAGTCTCTGTGGACCCAGACGCTAGCATTCTGACACACGGTGCAGGGAAGGTCTTGTTCTGTGGGAGCCCTGTCCAGGCCCTCAGAGCCAGGCGACAGAAGATGAGGAATGCAGCCCCCTCCCCTGTGTCCACTCCTAGCACCCCGCCCCTCCATGTTCCGGAGCACACCTATGACCTTGAGGAGCAAGAAGGATGCCAGGGCAGTGATGTGTTCTCTGAGCTCAGGGCCTGGAGGGAACAGCATAACAAACGTCTATTAGCCATGGAGAGGGATGGGCCTCAGATACTGACCATCCTCAAtggtgatgaagaggaggatgatgaaAGTCTCAACATTTTCAGTGgcaaggaggaagaagaggagggaaaaAAAGAGAGCGCTGGTTTGAGTCACTGGTTAAACACTGACTCGACAGACTCGTCTTCCCAGTCCCCCTCTCCAGATGTGTTTCCGAGAGAAGCCAAATCCCCTGAAGTGGCCCGGCTCTCCCTGTCCCCTGACTGCACTCTGTCGCCCTCTCCCCCTCAAAGTGCCACATCAGCCCCTGGTAGCCGGAGGCTGTCAGTGCTGCGAGCACACAGACTGAGGCTCAGTGGTGGGGTGGCTGGGGCTGTTGTAAGGCCTGCTGAAGACCATACAGACTCAGAGACGGTCACAGGAGTCCGCATCTTGGAGAGCCAGGGGCTCCAGGAGGCTGTGAGGCCCAAAGTCCCTCTGCTGCTCAAGACTACTTACCACATGCCCCACAGGCCAGCCTCCAGCCCACTGGTCAGAGGGCTCAGGTCACCAACAGGTGGAGCTTCTGTGCAGTCTGTCAACGGGCTTCAACCAATCGTCTTGTGCAGACCACCAGGGAGGCCGGCTATTATGCGTCCTCACGCGGCCAAGGCAGCTCTGCAGAAAACGCCACAGCGCCTCACACTCCAGCCCAGCAGGGGGAACTCTCACTTAGACTAAGCCACACAATGTCTGGGATTGTTTCCTGAGAGGGGAACACTCAAAACAGGAGCTGAGGCAGAGATGGAGATTGTCCTCCAGGTCCCCGCTCTTCTGAGCTGAGCCAACTTGTGATGTGAAGACTTCCTTAGAGTGCAGTGACAAGTCTCCCTCTATGTTATGTTTAGGAAAGAGGACACTGGGGGCTGGATTACATCCAACTGTCACCTGGAGAATGGAACATAAAAGCTGTGGAATCCAAGTTTGAACTTGCTATCTCAGTGTTCTGACTTCCTCTGATGGACAGTTAGAGAATCACCTGCATCCCTCTGCTCTGTCAGCTCAGTACAGTACTGACAATGACTCTGATACTGAGCTCACATTGGCTTTACTAAGGACAACAGCTCTATTTGAAAAGGTTTATAGTTTGGTCGAAGATAGATATATTTCTTGGAAAGGCCTTTAAATTGAATTAGTATGCTTTTCACAATGCTGCATTTTTGTGGGACTTAAGTGTGTTTCACATGTCTCATTCATGTCTCATATCTGTGTTTTTCAGTTTGAATTACATTTTGTACTGTTTTTATTCACTCAAGTACTACCTTATCCACACCTTAAATAAAAACATAGTTTGATCAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213128 lncRNA upstream 33774 78366133 ~ 78369599 (+) False G187919
TU213130 lncRNA upstream 33774 78366133 ~ 78369599 (+) False G187919
TU213132 lncRNA upstream 33774 78366133 ~ 78369599 (+) False G187919
TU213133 lncRNA upstream 33774 78366133 ~ 78369599 (+) True G187919
TU213111 lncRNA upstream 49457 78339166 ~ 78353916 (+) True G187904
TU213216 lncRNA downstream 2998 78454561 ~ 78456189 (+) True G187985
TU213252 lncRNA downstream 77500 78529063 ~ 78529333 (+) True G188020
TU213255 lncRNA downstream 83151 78534714 ~ 78534946 (+) True G188023
TU213262 lncRNA downstream 107191 78558754 ~ 78559351 (+) True G188030
TU213263 lncRNA downstream 108445 78560008 ~ 78560213 (+) True G188031
XM_021572942.2 mRNA upstream 50728 78348080 ~ 78352645 (+) False LOC110496927
XM_021572938.2 mRNA upstream 50728 78348081 ~ 78352645 (+) True LOC110496927
XM_021572888.2 mRNA upstream 136573 78233904 ~ 78266800 (+) False LOC110496871
XM_036956284.1 mRNA downstream 16136 78467699 ~ 78519071 (+) False LOC110496993
XM_036956288.1 mRNA downstream 16136 78467699 ~ 78519071 (+) False LOC110496993
XM_036956271.1 mRNA downstream 16137 78467700 ~ 78519071 (+) False LOC110496993
XM_036956278.1 mRNA downstream 16137 78467700 ~ 78519071 (+) False LOC110496993
XM_036956251.1 mRNA downstream 16139 78467702 ~ 78519071 (+) False LOC110496993
TU212466 other upstream 133328 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 225790 78137513 ~ 78177583 (+) True G187260
TU212344 other upstream 354573 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other upstream 354573 78047887 ~ 78048800 (+) False LOC110502077
TU212151 other upstream 622580 77777127 ~ 77780793 (+) True LOC110496763
TU213209 other downstream 33261 78484824 ~ 78506932 (+) True LOC110496993
TU213267 other downstream 127809 78579372 ~ 78580062 (+) True LOC110497055
TU216437 other downstream 2303578 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 2313769 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 2314169 80765732 ~ 80766714 (+) True G191057

Expression Profile