RNA id: XM_036956288.1


Basic Information

Item Value
RNA id XM_036956288.1
length 2245
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC110496993
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78467699 ~ 78519071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCTGACGTTGTTTTGACAAAAGCTGGACCCCTTCGAGCCATGACCCGGGAGGAGGGCTGAACATGTAGATAGGACTCGGATAATGTTAAAGGCATGAGACAGGTACGATAAATAGCTCAAACGTTATGAGATCATCAAAATCAGGAAAAAAACGTTTTTCTTACATGTCCGCCAAATCATTGGATACTGCCTCTTTAAGATGTCAATCAGACTGTTGTTTACAGTGGCGTGAGCAGGACTGATGCATGTGCAGAATATTTGTAGAGAGTCGCtgacagggacagtggagagtAGATTCAACTGCACCATGCGCTCTGGCAAGACAACCGGAGTAGAATACACCTGAAATAAGAGACGAGGACCTCTGTCGTTTTACACCGAATTGCTATAAGCCGGATACCTGCTGCTCTTCCCAGTGACAGTCTCTGAAGTTCCAGGTCTGCCAGGTCAGCTACTGTACCCTGCAGTGCTGAACTGAGCCGAACCGAGCCAAGCGGATCTGAACTGAAGTCCTCATTGCATTTCTTAGCATCGCGTCTCAGATGGAACTGAAGGTGTGGGTGGACGGTGTGGTGCGTGTGGTCTGTGGCCTATCAGAGGAGACTTCCTGCCAGGATGTGGTCATCGCACTGGCTCAGGCCATTGGTCAGACGGGTCGCTACGTGCTGATCCAGAGACTGAGAGATTCAGAGAGGCAGCTGTTAGCCAACGAAAGGCCCCTGGAGTCCCTGGCCAAGTTGGGCCAGCACGGCAACGACGTCCAGTTCTTCCTGCGCCGCACCGGCCCCAGCAGCAGCGATGGACCAGGGTCTGGCTCTGGCTCCACCCAGGACCGGGTCGCCCCTCTTTCCATGCCCAAACACCCCGAACCAGAGCCCCTCAAACGCACCCAGCCCAAGAAGTCCCTCACCTTTAACCTGGGGCCCTCCACCTCCCCCAAAAGCAAAGCCAAGCAGCTCATTAGGAAGTCTCCCTGCGACTCCCCCAAAGAGAGGTTCTCACCCAGCCCCATTCCTCCCCACCATGctacctccccctccccacactcccactccccctctccctccccccactctccctcccctctcgtGGGCCCGTCCAAAGAGGAGGTTTTCCGGCAGATTCTTCAGCAGCAGGAGAAGCTGAGGGCCTTTGAGGCCCAGCTGGAGGCCATGGAGAGAGACTCTCGGTCCAGGAACAGGGCCTCCccggcctcctctccttcccctgtcCCAGAGGCTCGCCTccaggaggagatggaggctcTGGAGCAGGCAGCCAGGAGGAACCAGGCCGAGCTGGCCCACGAGACATTCTGGGAGGAAGAGCTGCAGGCAGaggtggaaagggagagggggatgaggaggaggctgGGGGAGCTCCATGCCAAGATGGACGACTGCGGCCGGCGACTCCACGACTTCTCGTCTCGCTCCGCCCAGCTGGAGCAGGCGATCAAACGGGAGAACCTTGGGGGTGGTGCCCATGCTGGGAGGGCCAATCAGGCGGGGGGTGAGGAGTCGCTAGGGGCGATGAGGGCGGAGCTACAGAGCCAGGGGAGGCACAGCGAGGAGCTGGAGGGGGAGTTATCGGAGACGGACAGTGCTCTGGGGAAGGCTGAGTCACTGCTGCAGGAGAAGCAGGAGGAGTTGGAGGAGCTGAACAAGGAGTTGAGGCAGTGTAACTTGCAGCAGTTCATCCAGCAGGCGGGAGTCCtgccgacacacacacattcacgcacAGACCTCAGCGACCAGCTGGACCAGCTAGAACTGGCTCATATGCTACAGGAAAGATACAGAAACGGAGGCCTGGGCCTGCTCCCCTCAGAGTCGCCACCCCGGCCCACAGCCAAGCAGTTCCTGGGACACCCCCGCAACCTGCAGAACCCGCTGGTGTCCAGCCTCCACCCagaggTCGTGACATCCAGAGAGTCGTCATGGAGATAAAACCAGGAACGGCTAGGCCAAGGAGTTGTTCACTGTTTACTTAATGTCACCAACACATATTCTatttaacccctgtctgtctttatacctacagtctgttattattattaccacatatactatatacatactgtgTATATACTAGCACATAAATATATTTATAGCATTTTGCTACTGTACACTGCAAAGTACCTATGTATGAAATGTAAAATGATTTAGGAAAACCTTTACCTGGAGAATTATTACTTTGTTTGTGTatttaaatataataaaatattgTGCACTGTGTGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213216 lncRNA upstream 11510 78454561 ~ 78456189 (+) True G187985
TU213128 lncRNA upstream 98100 78366133 ~ 78369599 (+) False G187919
TU213252 lncRNA downstream 9992 78529063 ~ 78529333 (+) True G188020
TU213255 lncRNA downstream 15643 78534714 ~ 78534946 (+) True G188023
TU213262 lncRNA downstream 39683 78558754 ~ 78559351 (+) True G188030
TU213263 lncRNA downstream 40937 78560008 ~ 78560213 (+) True G188031
TU213274 lncRNA downstream 54488 78573559 ~ 78573771 (+) True G188042
XM_021572971.2 mRNA upstream 16136 78394111 ~ 78451563 (+) False lrrc56
XM_036956316.1 mRNA downstream 17956 78537027 ~ 78557268 (+) False LOC110502110
XM_036956297.1 mRNA downstream 17961 78537032 ~ 78557268 (+) False LOC110502110
XM_036956301.1 mRNA downstream 17974 78537045 ~ 78557268 (+) False LOC110502110
XM_036956310.1 mRNA downstream 17979 78537050 ~ 78557268 (+) True LOC110502110
XM_021573061.2 mRNA downstream 59078 78578149 ~ 78580190 (+) False LOC110497055
TU212466 other upstream 197654 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 290116 78137513 ~ 78177583 (+) True G187260
TU212344 other upstream 418899 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other upstream 418899 78047887 ~ 78048800 (+) False LOC110502077
TU212151 other upstream 686906 77777127 ~ 77780793 (+) True LOC110496763
TU213267 other downstream 60301 78579372 ~ 78580062 (+) True LOC110497055
TU216437 other downstream 2236070 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 2246261 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 2246661 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 2546483 81065554 ~ 81068564 (+) False LOC110497314

Expression Profile