RNA id: XM_036956301.1


Basic Information

Item Value
RNA id XM_036956301.1
length 9796
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110502110
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78537027 ~ 78557268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTCATTCCAGCCTGCGGTGTCACTCAACAAAATTTGTGGACTAAGCAGTTACTCCAAACATGTCATTCACAACCGTGTAGGGTAGGTGTAAACACCCTGGCTTTGCACGTTCGAAGTATACAATAACGTACGCCTGGATAATGATAACTTTTAAACTGACAACATATGAATGTCACATACACATAACGAGCGTGCAAGTAAAGTTATATTTAGACTCAAGCTAATGCTAGCAGTAGCAGGCTAGCATCTAGCAGACTATTATCCATAACAATGCAGGTACTGGTAGCTAGCTAAGAATATTCCATAACTTGCACGTTTTCTTTGCAATAAGGTAGGTAACGAAAGCTTATTTACAATGGTTTATTTAGCTAGCTCTTTTAGCGAGCATACATTTACAGTGCAACACCAAAGTCGCTCAATGGTTTTGTTGTTGAGGAAACAGAAGGCAGTGAAGCAGCAGCAgttgttagctacctagctactTAATTACTCGTTAAGCTTAACAGCTAccactagctaggtagctaacataTCTACGAAGAAGACAACTTGATATAAATGTCTTTCATTTGTCCGTCTGGATTGTACTTGTAATTTATGCCTGGGAAACTATGTAGTCATAGTTATCTACagtaggtaacgttagctaacggcAAATGTTCAAGTCTGCaaacgttaactagctaacgtagCTAACTCACGTCTCACAATGGCTAACTAGCTGTCCACTTGTGACATGTTATAATTGACTTACAAAGCTCCCTCACATACCGCTATCTCATGCAGTAGCTAAATCCGTATTAACAGTGTGAACATGCGTTCTTGTTGCATGTGTCAATACTGACTACACAGGAAATCGTTGTTGTGCATGGACCAGGTGAATAGTTGTGGCACTAATTTGAATTTAATGTGTTTTCCAGCTACTGAAAAGTCATATGTCTCATTTGAAGCATAGCCTTTGATATTTAGCTAGATATTGGTGCAGGAAGCTTTCTGATGTTCAGCCATGGATGAAGAAGACAACCAGGATGAGCTGATCAACCGGAATGCCTCACACAGAAAAGAAAAAAGGCCTACAGTATGGGCAATCTCAGATGAAGACAGCGATGAAGGTGGGGAGGAATCTGAGGGAGCTTCTGacagtggtgaggaggaggaagacctcctcgatggagaggaggaggaggaagacgaggaggaTGACAGTGATGATGGAGAAGAGGACGATGTGGTAGAGGGTGCGGTGGGGGGAGCGTCTACTGACTTGGCAGGTCTGAGCTCAGACGAGGACAATGAGAAATGCCCCATCTGCCTAAACTCCTTCCACAGCCAGCCCGTGGCCACGCCAGAGAGCTGCGAACACTACTTCTGCCTCGACTGCATCTTGGAGTGGTCCAAGAATGCAAACTCCTGTCCTGTGGACAGAATAGTCTTCAATAACATCTACCTGAGAAAATGTTATGGTGGGAAAGTGCAGAAAATGATCACAGTGCAGAAACCAGTGAAGGAGGGCCAGGAGGAGGTGATCGACTTGGAGCTGGAACAGACCAGCTGCGAGGTGTGTGGAGGGAGTGACCGTGAAGACCGCCTGCTGCTCTGTGACGGCTGTGATGCTGGGTACCACATGGAGTGCCTGACCCCCCCGCTGGATGCTGTCCCTGTGGAGGAATGGTTCTGCCCAGAGTGTCAAGCCAACAACCGCCATTCAAGGGGTTCAGTGGAAGAGCAGAGCAACACGGAGAGTCTGAGCAGCGCCCGTCCCACAACCAGCCGCTCCCGCCTCCCTGCGGCAGGCCCCACCCGGGCCATTGCCCGCACCCAGCAGAGTGAGAGGGTCCGCGCCAGTGTCAACCACCACCGCATCACCCAGGCACGCATTGCACAGATCTCCCCCAGCTTTCTGATGCCACAGACCACCTGGCTGGATGAGACTATCAATGCAGTGGTGGCTGGACTCAACACAGCTGTGTACATACGGAACCTCACACCCCGCGTTCCATCCAGTCGACGACGCAGGACAGTAAAGCGCAGGAAAGGCCAGAGTAAGAGGTCATCGTCTGCCACGGGTGGTAAGGGCAAAGCTGCAGGCactggggtgaggaggaggaaacGGCGAGTGAGGAGGACCAAGTCCAGAAGGAAACTGGTGGTGAAAAAGGAAGCTACGTCACGTGGTCGTATAGCCCGTAACCTAGGGATAGGGAAGCCCAAACGGGGCTCGTCCCTTCCCTCTGTGTACCAACCTTCAGAAACCACTCTGGGCAGTATGAGGGCTGACATAGGAGCTGCTTCGCTCTCTGTCTATGGAGACCCCTACGATCTGGACCCCTTCACTAGCAGggatgatgatgaggaggagcaAGCCTCGGTCACGTCATCACTGCTGGAGGCCAAGAGGCGTGGCTTATCTCGCTCCGCACTCCTCTCACACCAGCCTGTGGCTCGACCAATCACTGCTGGCCTCTCTAGGTGGGGCTCGAGCCTTCCCCAGTTGGAGGAGGTCGCAGAGGTGGCCCCAGTGCCTGACCTGCTGGGCAGCATCCTATCAGGGCAGAGCATGCTTCTGATGGACAGCTCAGACGTAGTCATTAACAGAGATGGATCCCTCAAGGCTATCAAACCAGtGGGTTTGTCGTTATCCATGCCCAGCAGCAGTAGGAGCAGCAGCTCTGGTGAATCAGTAGCCCAGCTCCACTCAGAGATGTCCCCTACCACAGCAGCCAGCTCCCTTTGTCTCCCCATTAATGGAGACCTGGTAGCAGGACCCTGCCTGTCCCCTCTCACCCCTTCATCCCCCCACTCCGCCACTTATCCAACTCCCATCCTGAGTCACCCACACGTCCCTGCCCCCTGTAGACCCAGTCCTGGACACAGCCACTGGGAGGACACCGGTGTACTACCCCCCCATGGGACCCAGAGGGCTGCCACCTCCACTCCTACTCCAGACTCTCACTCCAGAGGTAGGGAGATGGTGCCACCACAGCCCCAGGCTAAGAAGGCCGCTGCTAAACCAGTATGGGAAGCACCAGTATTGGTGCTTCCCAGGATACCAAGGATAAAACGGGAGAGCGGTGGCCTGACGAATGGCAAtgccagcagagggggtagtagtggtagtagtagcagtgctaatggtagtggtagtaatagctTCCCTGATGCCTGTGTGAACAGCCTGGGTGGGAACAGGGGCAGGCAGCAAAGTGTGGACCAGCAGCAGGgcaggacagagggacagagaccagacagagcAGGCCCTTCCTCAGCCTTCTCCAGCTCCTTCTCCTCTTCGTTCTCCTCTTCTGATTCTGCATCTAACCCTGCCCGCACCTCTTCATCAGCATCATCCACGGTGTGCTTCCGGATCAACGCCAGCTCTGTCTGGCACGCCAGAAAGCTTAGCAACGCTTCTGCAATTGTTGCAGCTGGAAACTGTCTAGAACCAGCGTCTCCAGAGGAAGAGAAGGCGAAGAGGAAAAGCGAGGAGCGCAAGAAGAAACAGAATCTACTGACGTCCTCACACACACCGgtcaaagaggagaaggaagagggggaTATATACGATCCCTTCCATCCAACCGGCTCAGACAGCGAAGCAGAGAGCCATGCTGGGGGGAAATCAACCATGGTGCACAAGGAAGGTCCCAGCCAGCAGGTGAAGGAAGGTCCCAGCCAGCAGGTGAAGGAAGATCCCAGCCAGCAGGTGAAGGAAGGTCCCAGCCAGCAGGTGAAGGAAGGTCCCAGCCAGCAGGTGAAGGAAGGTGCCAGCCAGCAGGTGAAGGAAGGTGCCAGCCAGCAGGTGAAGGAAGGTGCCAGCCAGCAGGTGAAGGAAGGTGCCAGCCAGCAGGTGAAGGAAGGTGCCAGCCAGCAGGTGAAGGAAGGTGCCAGCCAGCAGGTGAAGGAAGGTGCCAGCCAGCAGGTGAAAGCCCTGTCACTGGAGAGGGATGAGGGCTCAGGAGAAGGTCTGGAGGTGAAGAGGGAGCCAGAGAACTCTGACACTGCAAAGCCTGGTCACAGCCCTCACAATGCACCCAGGTCTGTGATGACTGGCACCAGCACACCTCTGTCCCAGAGCCAGGTCCatctgaagagggagaggaaTGAGCCAGGGGGTGAGAAAGGGCAGCACAGCCAGACTGGCAACAGTagagagccccagaaccagcagACTACTCCTTCCTTATCCAGCTTAGCCTCCAGCCACCACAGAAACAGGATGGTGAAGACTGAGATAAAgtcagagccccaggacagcccCCCCAGGTCCCCATCCAGGTCTAAATCACACTCCAGGCCCCCAGGCCAGGGGAGGAAGACATCCAAAGGCAGGGGGTCTTCCATGGAGCGGCGGTCTGCCTCAAACAGCCCAGAGGCAGGCAGGAGGAGGGGAGACAAGGCCCCGGAccaggcagggaggaagagaCGTTATGAAGGgggtaggagaggagacaaggggcGAGAGAGTTCTAGGCGTTCGGGAtcgagggagaggagaaggactcGGTCCCCGTCAGACAGCTCTATCTCTGATATCTCTGAGAGGTCTCGCAGGAAGAAGAGACGGTCACGTTCTCCCTCCAAAGACAGGAGGCGCTCCAGGTCATGGTCAGGCTCCAGCAGTAGAGAGCGGTCCAAGAGGAAAAagcagaggagagggagcagggagaggaacGAGggcagagggagtgaaagagagaagggTCGCCCGTCAAAGGACAAGAAGCGTGATTGCTCGCAGTCTCGCTCGCGTTCCCGTTCCAGGTCCAGGGAAAGGAGGAAAGACCACTTACGATCACAACCATCATCCTCCAGATCAAAGGACAGGGTTGAGGTGCGGTCGAAAGACCGGAAGAGGCCGAAGTCCAGGTCGCGatccagagagaggaggacagaagaggGGTCACAGAGACCACTAGGGTCTTCCTCAACCACCACCTTCAATAAGCTAGAGGaacagaaagagaagaaaaaggtAAAAGTTCTCCCCCGCGTCCCTCTGAAAGAGGAGAGCGAGACtaaagaagagaggaaagagcgaGAGATCAAACAGCAGATGCTTTCCTCAGGACTcaaatctctctctgtcctctctgcctCAGAGGTGAAAAAGGAGAGTGACAGCAATGACATTAGAACAGAGAGACTTGCCTCTCTCTCAACAAAACTACTCAATGAGTCTATGTTGCTAAAAGAGATTAAAAAAGAGAAACCTGCCTTTGATATGTTGGAAGAATCACTGGATAGTAAACCAATCAAAAAAGAAAAACCTCTGTCAACATTCAGCACAGTCAAGGACTTGCAACAGCACAAGGAGATCGAAAAAGAACACCCTTCCGCCCTCATAAAGGAGGCGTGCGCAGTCTCCACATCAGACATAGCAGATCAAAAAGATCAGGCGTTAAAGGAAACCATCAAGACTGAGCCCATCTGGCCTGAGCTGCCTCAACACCTAACCTCCAACATCCCTGTTCCCCCCACCCAAACTGGCCAATCCAGCCCAAGCTTCTCAACACTCAGCACACACCTTGTCCTTGCTCCTCCTCAGGCTGCTGAGAGTATAGCCAGCCAGCAGGGGACCCCATCCCTGATTCCTCCAGTACCAGAGGCCCTCACAGAGACTCCTCCACTAGTCCAACCCATCTCAGTGAACCCAGAGAAGCACGAGGTAGAGGAGCCTTCAGACGATGACATGGACGTGGACATGATGCTGGACAGCCTGGACTATGTGAAGACGGAgccaggaggagagagtggggaggctGGGGTCAAacaggagaaggaaggagagggagagaaggggaagactGGGGGAGAACTGGTGCCAGTCACGGCAGGTGCCAAGGCCAAACCCTCGGTGAAGAGGGTCACCTGGAACCTGCAGGAGCCAGAGGGGCCACAGCCAGAGAAGACTGGCACTAAGCTGTCCCTCTACAAACTGAAGCTAAAACAGGAGGGAGCTCGCAGACCTGCCTCTTCCACCCAGGCATCCAGTCAGGAGGCTCCCTTGGGGGCTACGTCACTCACTGACCCCAAGGTCCAGAGCACCAAGAGGGGCAGTGTGTCCATAATGCTCCCTAGTGCCATTTCCAGCTCCAGCAGCCTAACCAACGTAGTGCTGTCTAAACCTGGGCAGGAGGAACCCAACGAAGACCTGGGAGAGGATGATGTTTCTAGGAACGATAAGTACATAAAGAAGCTCCACATGCAGGAGAGAGCCATAGAGGAGGTGAAGCTGGCTATCAAGCCATTCTACCAGAAGAGAGACATCACTAAGGACGAATACAAGGATATCGTACGCAAGGCTGTCCAGAAGGTCTGCCATAGTAAGAGTGGGGCGATCAACCCAGTAAAAGTGGCCAACCTGGTCAAAGCCTACGTGGACAAATACAAACACTCCAGGAAACACAGGAaagtagaggatggagggaagaCACAGGAGGCAGAAACGGATAGAACAAATGACCCAGAGACCCCATGAGGACCCCACATTCATCCACACGCCCTGGAGACTCAGCTATTTTCACACTAATTTGATTATTTCTGTTATCAAATTGTCATAGGTTGTTAGGGGACTCAAGGACTTTGAGAAATACTGCCTCCAGATTGGCTATTTTATTCATTGTTTTTGGGGATTATAAAGTTGTTACATTATGTTCATAGTAATTCACCATCTCACAAAATAATGGAAGAGCCTTTTCATTGAAAGATGTGGAAATAACTTAGTGGACCCAATGTGGTCTTGCACTTTGATTACCACCGACTGACAAGCATTTGTTTTTGAATTGGATTTGTTTCAACATTCACACAAGGCCAGACCATCTCCATGCACTTTGTTTTCATGGTCTAGCATGGTCTACTCTTGGAGAGGTTCCCACAGAGATTCTGTCTTAAACAGACAGCTCTGTCAAATAGCCTTTCCATCAAGAGAGATTGAGGAATAATGTGAATGAGCTTTTTTTTTACAGGCAAAATGTCTGACAAGAAGCAGTGCTGACTTTTTTTAAAAATGGTGTATTTTGTATGGGAGAGGGGTGTTTATCTGTGGCATGAGTCCTAATTCTGTGGTGTCAAAGTTCAATGCTGTCATTGACATATTAGAAGAAGAAAATAATGCCACAGTGCAGAAAAATACATGTATGCAATTTTGTAGAGTAGGAAAGTTATTTCTGATTTTAGATTTGGTGTAAATCTAGATTTTGGATTCACCATGTACGCCCTTCCAGTTGCGTTAGCTTCCTACTGGGTATTCACAAATGTATACTGTGGATGGTTCTGGAGGAAGTTTGTTGTTTTTGTGAATGTCTCTGTGCTATGGGATGTGGGTCCGATGGAGTGCTGGTTGGCAAACGGTACAGTTAGGCTCTTAagttgaccagtttctcacagcaggaaaatagtcTTGTAGCAACAGGAAATTTGAATTATAACTAAATaccatttttgtaggggttgatacgttTTTAGTTTAGGCAAATCAAGCCTgaaattttaaagtggaaatatcaaactttagaagcctttttaaaccacGAATACTCTGcatgtttgcatttcctgctgtgcctTGAAATgtcctgcaacaacagggtgatcaagttaagatcctacatctgtatgtggcTACACATAGTGGCTGTCTTGAGTGGTGTTCAGATTGAGTCAACGCTCCTCTGGTGTCTCTTGGCAGAATACCCGAGATAACACAACTCAGACTTCCCATAAAACATGGTTGTTGATAAAGTTTCTGTTATGTGTGCATTTTCTCAAATTCAGACTAGGCCCAAAGTGTCTACTGGTTTTAATTCTAATTTTACTTCAGCTATTGACTAAGACATAGGAAACTAGGTGAGACTTTAATTAATCAATTGACAAGTAATTTGCCAAGGAGGAATGAAAACCTGCAGCCCTAGGGGACAGGAGTTTAATAAGTTTTGAAGCTGAGTGAATTCTGCACCTTCACCATTCTTTTCTGTTATTTTACAGTTATTTCAGAGTCAAGTGGCTAGTCCTGTTGTGTATTGGTATGATAAGCTATAGCATAAGACAAAGCAGACAATGCCCGTCTTGCAGCTTAATGTTTGCAGTTATTCACACTTGATTATGAACTCAACTAGTTGCTCACATTTCCTTTGAAAGATTGTCTGATTCAAAAAGAAAAGGTTCCAATTTGAATAACATTTGCAAAAACAAACTGATTTTGTTTCGTTACTTACAAATATCACTATACTAGTCGTGGGGAGTGTGTGCATGGTTAAATAGCTAACAGTCCGTAGTCAGGGCCAGGATGTTTTTGATGACTACATGACCtgattataaaaaaacaaaaacaaaggccCAACGTTTTTCCTAGTCAGGTGGCGTGGGTGGGAGAAACTGGCCCTAGTCATACTGTATGCAATTCATGTCATCCTTAACACTGTTTCTCATTGGAGGAGGTGTTTGGCTTCCTTCCTGCTAATGAATACTGCTGTCCACTGTGCCTCAAAACAGTTGGCCTTCTCAATTTATTTTCAGATTCCTCTTAATCTCTTCTAAAATGTTCTATGTAGAAAAATGCTTGACACTGTCACCCTATCTTTTCCTTTTTTGTAATTGACGTGTCCATACTGTGTGTGTTCAGTAGACCGGGTGTGTGTGGACCTGCCTTTGGCTAAGCTTGTCTTGTCCTGCACCTTGGACTTTACGATAAAAATGTCAAATCAATCCTGGAATATTATCCTCTTGGCACTTAGGATTGGATAGGTATATCAGAGGGCAACATGGAGCTATTATTGAATTGTGTATGCTGTACCTATCTGATCCTTTCAGATGTACTTGAAGTGTTCAGGGGTTGATTGGATTTGAGCATGTACTGTACCTTTTTTCTTCCCTCATTTACTTGACACTTAGGACAAGTGCTTCAAAAGGGGAACACAAAATTACAACTAAGTGAAATAAAAGTAAGATTTGTCACAATTTACATTTTGCTCTGATCATGTTTTACTAACATGCTAAATTTAAGGGATAACTTTTGTGACCGTATGGGCAACATTTTGGAAAGGAACCCACAGTTATAATACCATAATATTTTACGTGAGGGTATTACACATTTTTACAATTTCCTCTCAAACTGTGATGAAATGATGAGAGAGGGGTATTTCACCAGGATTGGGGTTATATTCATTCCAGTTCAATTCCTGTCAACTTTTAAAGCAGCCATGACATTTCTCCataggaatgcatttcaatgccTGAATTGGCTGGAATGGTGGAAACCCCAATCCTGCCTGATTTCCACTATTCTGCTGTAGGTTTCTCTGAGCAATGGTTTGTTGCTCTATACTGAGCCAGTGGAGAGGTTTTTTCTTTCCGGCCCTGGCAGGTCTGTATTATCCTTACTGCTGCCTTGACTATAGCTCACTGGGCCTGGGCCAGACTACTCGAGGTCTCACTGGGCCTGGGCCAGACTACTCGAGGTCTCACTGGGCCTGGGCCAGACTACTCGAGGTCTCACTGGGCCTGGGCCAGACTACTCGAGGTCTCACTGGGCCTGGGCCAGACTACTCAAGGTCTCACTGGGCCTGGGACAGACTACTCACGGTCTCACTGGGCCTGGGCCAGACTACTGGATGTGTCACTGGGCCTGGGCCAGACTACTGGACCTCTCACTGGGCCTGGGCCAGACTACTGGACGTCTCACTGGGCCAGACGACTGGAGGTCCCATTGGGCCTGGGCCAGACTACTGGAGGCCCACTCAAATGTTTGTACATATTTTTCTGGGACATTgtaattaataataaaaaatacaattatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213255 lncRNA upstream 2099 78534714 ~ 78534946 (+) True G188023
TU213252 lncRNA upstream 7712 78529063 ~ 78529333 (+) True G188020
TU213216 lncRNA upstream 80856 78454561 ~ 78456189 (+) True G187985
TU213132 lncRNA upstream 167446 78366133 ~ 78369599 (+) False G187919
TU213262 lncRNA downstream 1486 78558754 ~ 78559351 (+) True G188030
TU213263 lncRNA downstream 2740 78560008 ~ 78560213 (+) True G188031
TU213274 lncRNA downstream 16291 78573559 ~ 78573771 (+) True G188042
TU213546 lncRNA downstream 77077 78634345 ~ 78634578 (+) True G188282
TU213551 lncRNA downstream 81851 78639119 ~ 78639344 (+) True G188287
XM_036956251.1 mRNA upstream 17974 78467702 ~ 78519071 (+) False LOC110496993
XM_021573061.2 mRNA downstream 20881 78578149 ~ 78580190 (+) False LOC110497055
XR_005039456.1 mRNA downstream 374155 78931423 ~ 78931476 (+) True LOC118944149
XM_021573107.2 mRNA downstream 546306 79103574 ~ 79151359 (+) False LOC110497132
XM_021573108.2 mRNA downstream 546306 79103574 ~ 79151359 (+) True LOC110497132
XM_021573109.2 mRNA downstream 619760 79177028 ~ 79235909 (+) False LOC110497158
TU213209 other upstream 30113 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 267000 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 359462 78137513 ~ 78177583 (+) True G187260
TU212344 other upstream 488245 78047887 ~ 78048800 (+) False LOC110502077
TU213267 other downstream 22104 78579372 ~ 78580062 (+) True LOC110497055
TU216437 other downstream 2197873 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 2208064 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 2208464 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 2508286 81065554 ~ 81068564 (+) False LOC110497314

Expression Profile