RNA id: XM_021573089.2


Basic Information

Item Value
RNA id XM_021573089.2
length 2517
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110497088
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78926451 ~ 78998262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAGCTGAGGAAAACAAGGAAGTGAATATAGCCAGGGCCTGAGCGTCAACTGTGAAGTGAAAGGAGCAGGTTAGAGCACAGAGAGCAGGGCAGCTGTGCTAAGgaagtgctagctagctaacatcatcACTGGCTGTGCTCTCcgcagcagagagagaaacaaagagtgACAGAAAGCGAACAAAACTGCAGAGCCTGCCTCACAGATATACCAGGTGTCCTTCACTTACCCCCCTACTCACTCTACTCAGACCCACTACAATGACAGACGAAAGGGAACCCTGGAGAGGAAGTGGAGGACCTGATGAGGACGAGCTACCGCAAATGGATGGGTCATGTGATGCGTGTGAGCCTGATGAGGCCCAGCCGGCGACCCAGGTGTGCCACACCTGCAGCTTCGCCTTCTGCCCTGCCCATGCCGAGAAACACGCCTGCAGCACACGACACCAGCTGATGCCCTACGGCCAGGAAGTGTTGCAGACGCAGTCCCAACGGCTGGGCAGGGACAGATACACAAGGGAGGGGGCAGGGGAGGAAAGGGTACAGGGAATGAGGCCTGCGGCAGAGCCAGGGGTGGTGGAAAATTGGGCATGCGGTGGGGCTGGGATACAAGAGAACggtgtgtgtggaggagagagagaccaggggaaggGGAAGGTTGATGATGAAGAGGCAGTGGCGGCTCTAGAGGGGGTTAGTAagagagacacagtgacagtggaGAGGCTGCGCTGTAAGGAGCATGGCCAGGAGGGCACTCTCTATTGCAAGGCTGACGAGAAGGTCATCTGTGTGGTGTGTGCCGTGCAGGGGGAGCACCGCGAACATGAGATCATCACCCTGCGCGAGGCCTACGTCTGGCAGAAGAGCAGGGAGGGTTACGACCTGCTGGGCTGCACACAGAACATGGCTGACCACATCAAGACCAAGTGGACCAACCCTGAGATGTCTACAGAGCAGTTGGAGGCGTATGTCAACAATCAGTTTGATGACCTCTACCGGCTGGTTCGTCTGGAGGAGAAGAGGACCCTCCACCTGGTTGACCTGAAGGAAGCCTTCCTGACTGCCGCCGCCGCTGAGAATATCGCTGAGATCACCATCCACACCAAGCGGCTCCAGGAGGAGATGGCCTGCATCACACAGCAACTGGGCCAGCTGGACCAGGCTGGGGCACAGCCTGGGGCAGCAATAGCAGCCCTAGTCCAGGCAGGAGCACCTGGCCCGAGCCCCAGACCAGTGCAGCGCAACATTGAGGCCAGGCCAAGACTCCCTGAGCCGAGACGAGACCCCAGGGACTACGGAGAGGGCAGGTCCGGATCCTCAATGGGACACGCCCCCTGACAAATCaactcccacacctctctctcctcctacctctGTCCAGGAGACCAACACTAGAAGAGAGTCTCCTTTCCTCTGCATGTCTGCTGACGTTGGAGTGACCTTGAAGAAGGCTGCTGGTGGTATAACAAAATGGATCTTATTGCTTTCAGAACTTTTAAAACTACAATAACTATTTTAATTGAGGAGCATGATATCCATGCAATCAATTTCCATCAGAGTCAGTTTTCACACCCAATCAGATCCTTGGCTGGTGAGCTTGGCTTAGAGAGGACTGTGGGTAGGAAAGCATAGCGGCTGAGTGCCTGCTAAAACCCAACTGAATAGAACATGAAATCCTGAATGTGACACGCTGTGCTTTACTTTAATTTCTTCTGTATATTTTGTTTTGACAAGCAGCCTTGAAAATAGAAAAGTTGACTGGTGACAGGACTTAGATCAGAGGAGAAATATAGAATGTACAGGACAAGGTGGGTGTTCCTGTTTTATACTCTAAAGGGAAATGTATTACAGGTGTCTCGAAAATCTTCCTTGACGTATAAACACAAGCTAGCActcacctctcatctcctctcctcttcttcttctacctctCCTACAAATTCTTTGTGTTTGTCAGATCAATCAGATGAAGCATTGACACATAATTAATTTGTGAGAGCCTCAGAGTACATGCTAGGTGAAAATCAAAGTGTATTTTGCCTGTAAGTAATATTCCTCTGTGCAGTGTCAGCATTCTCTAATACCATGCCTCATTACCCGAGACAATCTGCACAGACAGTACAGTCCTGACTCCTGATGACTAACTTCACTCAGTATTGTCTTACTCCATCATGTCTTTCAATATTCACatacagagggtgtgtgtgtgtgtgtgttttgtttgtgatGTGATCTAGAGACAAGTCTTAATGTGAAAGGAGAAGGTGACCTTTGACCTAATCAATATGACTTGAGTTGTGAACAAGACTCAGCCCTACCCAATGGGATCATGTTATTTTGTAGCAGTCATATAATGATTTATAGAAAAAGATGCATTGATTGTTTCTATTCAGCAATAATGGTAAGAGTAAAGAGGGTGAAAGGAAAATAGTCAAGACATTAAAAtgattacatttttgttgttgccttAAATTAATGAATAAATGAAATACATATAATGGTTTCAGAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213948 lncRNA downstream 5507 78920727 ~ 78920944 (-) True G188654
TU213915 lncRNA downstream 48695 78875987 ~ 78877756 (-) True G188622
TU213771 lncRNA downstream 139543 78729602 ~ 78786908 (-) True G188489
TU213753 lncRNA downstream 213306 78711951 ~ 78713145 (-) True LOC110497066
TU213749 lncRNA downstream 214591 78710926 ~ 78711860 (-) False LOC110497066
TU214136 lncRNA upstream 24550 79021057 ~ 79021367 (-) True G188834
TU214195 lncRNA upstream 105087 79101594 ~ 79101991 (-) True G188891
TU214435 lncRNA upstream 163139 79159646 ~ 79159910 (-) True G189117
TU214436 lncRNA upstream 163721 79160228 ~ 79160501 (-) True G189118
TU214437 lncRNA upstream 164607 79161114 ~ 79168466 (-) True G189119
XM_036956343.1 mRNA downstream 72986 78710898 ~ 78853465 (-) False LOC110497066
XM_036956334.1 mRNA downstream 72988 78710898 ~ 78853463 (-) False LOC110497066
XM_036956322.1 mRNA downstream 360495 78560978 ~ 78565956 (-) True LOC110497044
XM_036956246.1 mRNA downstream 532487 78366116 ~ 78393964 (-) True LOC110496976
XM_036956249.1 mRNA downstream 532515 78366116 ~ 78393936 (-) False LOC110496976
XM_021573105.2 mRNA upstream 50925 79047432 ~ 79049962 (-) True LOC110497116
XM_036956430.1 mRNA upstream 247105 79243612 ~ 79276976 (-) False LOC110502122
XM_036934247.1 mRNA upstream 307809 79304316 ~ 79350048 (-) True LOC110502133
XM_021573118.2 mRNA upstream 389776 79386283 ~ 79393989 (-) False ehf
XM_021573122.2 mRNA upstream 389776 79386283 ~ 79393989 (-) True ehf
TU213521 other downstream 309144 78616582 ~ 78617307 (-) True G188257
TU212754 other downstream 1222962 77702899 ~ 77703489 (-) True G187579
TU212651 other downstream 1455354 77470393 ~ 77471097 (-) False G187490
TU211715 other downstream 1754812 77169963 ~ 77171639 (-) True LOC110496628
TU211248 other downstream 2602561 76321807 ~ 76323890 (-) True si:dkey-234i14.6
TU214411 other upstream 226723 79223230 ~ 79224998 (-) True G189093
TU214582 other upstream 369342 79365849 ~ 79366569 (-) True G189256
TU215157 other upstream 763532 79760039 ~ 79760627 (-) True G189806
TU216232 other upstream 1555620 80552127 ~ 80552484 (-) True G190857
TU217118 other upstream 1919172 80915679 ~ 80921415 (-) False G191669

Expression Profile