RNA id: XM_021573107.2


Basic Information

Item Value
RNA id XM_021573107.2
length 4662
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110497132
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79103574 ~ 79151359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaagagacaaattcagagagtgagggaaggaaagagagagggagggagaaagagaaagcaacagagggagagagaaagagaaagagtgtgaTGTCAAACCAGCTGAGCTCAGAAAGTAAACAGAGCTCCAGACTGCAGCATGCTTTCTGCGGTACGGGGACTGCAGCTGGGGGAAAGCCACGGGGGGACCCCTACGCTCCCTCACACAGGCATCCACCACTCCCCCGGGACCCGTGGATCTTCCCTCTTCATcactctcttcatcctcatctcCCTGTACCAGGGGCTAGCATGGCCCTACGACTACAGGTACCTATATAACCAGTGTCCGGGCCCAGAGTGGAACGTCATGTGTCGGGGCTGCTGTGAGTACGACGTGATCCGCTGTAAGTGTCCCCTCCAAGGCACCCCCGTTGGCTACGCTGTGCCTTGCTGCCGCAACGCCCTCAACGAGTGTGACCCCTGCATCATCCACCCAGgTTGCAGCATATTTGAGAACTGTAAGCGGTGTAACAATGGGACGTGGGGGCCCAGAGATGATTTCTTCGTCAAGGGGAAGTACTGTGCTGAGTGTCGACCCGGCTGGTCAGGCGGTGACTGCTTGAAGTGTGGAGGAGTGATCCGTAAACGTCAGGGCCACATAGTCCTGGAGAGTTACCCCACCAACGCTCGTTGTGAGTGGACTGTTCAGGTGGACCGAGCATTCACCATCGATTTCAGGTTTATGATGCTGAGCCTGGAGTTTGACCATTCCTGTCGCTACGACTACATCGAGGTGCGTGATGGTGACAGTATCAACTCTCGTGTGATTGGTCGGTTCTGTGGGAACAACAGGGCTGCTCCAATCCAGAGCTCTGGCAACTCCCTACACGTCCTGTTTGTAGCCGATGGCTATAAGAACTTTGACGGCTTCTTCGCCACCTTCCAAGAAAGCTCAGCATGCagctcctccccctgtctccatgATGGAACCTGTATCCTGGACACGTCCCAGTCCTACCACTGTGGCTGTCTGGGTGGCTACACTGGACAGCGGTGTGAGAATGTTGTAGGGTGCAGGAGGCCCCCAGTACCTGTCCATGGCTCCACAGAGGGGATATTCCATCACTCAGGGGCGCGAGTCACATTCCGCTGTGACCCTGGGTTCGAGCTGAGGGGGATCCGCACCGCCATCTGCCTCCAGGATGGCACCTGGAGCACCTCTGCCCCCCAGTGTGTGCCTATGGTGAAATTATGTGCCATCCCAGCCAAGCCTGTGCATGGAGACCACTTCCTAGTGTACGGGCCCAATGATATCATCATAGCCCTGCAGTACCTGTGCTACCGGCCCTACAAGCTGAGCGGGACGCACCAGAGGACCTGTTTGCCCAACAACACCTGGAGCGGAACACCCCCCACATGTGGTAAAGTGAATAATACACTTGCTGAACCAGGCAAAGACAAAGGAAATGACAAAGCAAGAGATACAGAAAAGGACAAAGAAAAGCATGCAGAAAAAGAGAAAGACACTGACAAAGACATTGAAAAACccaaagacaaagagaaagactATAATACAGGTATCAAAGAGGACGTAGCTTATAAAGATCCAGACACAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTTAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAACAGATGGTAAAGACAAAAACATTGACATTACTCTGGTTAACATCCCAGGACGAAACGAGGATAAAACAAGTGACAAAGAAAAAGAAACTGGGCTAGATAAACCTTCTGGAGATACCAAGGATAAAGTGGACAGTAAAGAAACGGATGACATTGTAAacacagtggagggagagagagaaaatgacgTGGGGAAAACCATCTCAGACATAGATGGCAGTCCAGATACTGGGGGAGACACAGACGTGGTACGGGAGATAGGAAAGACAACAGAGATCCCTgagatagtggtggtggtggaagataaaggacaggaggaagagaagaagaaagaggatcCAGTAGATAAAAGCAGTGATCCAAACATAGTTGATCCTAATGACTTAAAACCTAGGGGAGACACATTTGCCATAGATTACACTGAGTTAAAACCTAGGGGAGACACATTTGCCATAGATTACACCGAGTTAAAACCAAGGGGAGACACATTTGCTGTAGAGTACACTGTTACGGATGTGTTTGGCACCAATGACATAGAGCAGGGTATGAATACAACAATGTCGAAAGACATTGTGAAGATTTTTATTCCAActagaaacaacaacacacagttcACCCCATATTCATCAGGAGGTCAGGAAACCGAGAGGCTGGTGGAAAAGCCACACAAAGATATAGGAGCAACTAAAGATATAGGCTCAACTAAAGATACAATGGCAAGTACAAGCAAACCTGAAGAGGAAAATACTGGAAAAGATTCTGACAAAAAAACTGATGATGAGTCTGATGATGAGAAGAGAGAAAACCAAAGCATCAGTGAGGAGAGCTGTCCCCCTCTCCCACAGCTCTACCATGGGTACCAGCAGGTAGTGCCAGGGCTGGTGCCAGAGACAGTGGATTTCTTTTGTAATCACTCCTACGCTCTGAGTGGTGACGCCAGACGCACCTGCCAGGCTGGCGGAACCTGGGGAGGCACTCAACCCCTTTGTGTGAGAGcCTGCAGAGAGTCCAAGGTCTCAGAGCTGGTCAGACAGAGAGTTCTGCCTCCACAAGCTCCATCCAGGAAGACCCCTGTGCATAAGCTCTACTCATCCTCTGGGTTTGTGAAGATGTTCCAGTCTGTCGGCCCCACCAAAGTTCCCCCAATGCTATCCCAGCTGCCCCAGGGGTTCCACCACCTCCACACTCACATAGCGTACGAGTGTGCCTCTCCCTTTTACCAGCACTCAGGCAGTGCACGCCGCACCTGCCTCAAGACTGGCAAGTGGAGCGGGCGTCATGTCTCCTGTTCACCAGTGTGTGGGAAGCACCCTACCTTTGACCCCCAGAGCCCGGCAGAGTCCCACTGGCCCTGGTTAGCCGCCATCTACCAACGCCCCACCAACGGAGCAGGGACCAAGCTGGGCAAGAAGGCCAGCCTTGCGGGGTCACTAAAGAAGGGGACTGGAGCTGAATTAGGTGCTGGGGTTGGATCCCAGGGGCAGGATGAGGCCTCAGGCTGGCAGCTGGTGTGTAGCGGGGCCCTGGTGAACCAGCGGAGTGTGGTGTTGGCAGCCCACTGTGTGACTGAGCTGGGGAAACTGTACCCTCTGGATGCAGCCACGGTCAAGGTGGTGATGGGAAAACATTACCGCAGTGACCTTCGGGAGACCAAGGGCCTGCAGCATCTCAGGGTGGCCTCCATCTCTATCCACCCCAACTACGACCCCCTGGTTCTTGACTCAGACCTGGCAGTGATCAAGCTCCTGGACAAGGCTCGTATCGGGGAGAAGGTCCTGCCCCTCTGCCTACCTGACATCCAGGGGGGAGAGGTGACCTCCAGAGAAGGGTTGGTGACGGGCTGGGCCCCCCTGCCAGATCCCCGGATCGGGGAAGAGGAGCAGGCCAGGGTGGGTGTGCAGCACCTGGCCGACGTGGTGCCCTGCGAGCAGCAGTATGCCCGTAAAGGGGTGCCCGTGAGCGTCACGGACAACATGCTCTGTGGCCGCCAGCGACTCGACTACAGCCCATCTAACATCTGTCCCGCAGACACAGGGGGTATCCTGATCCTTCCTGCCCAGACAGGCTCCCCCCAGGACCCCTCTCTTGCCTCTCCAGAGGGGCGGGACACATCCAAAGGGGAGTGGCGGCTGCTGGGGTTGGTAAGTTTCGGGTATGACCAGGGAGAGTGTGACCCAGACCTGTTTACAGTGTACACACATGTGGCCAACTTCAAAGACTGGATAGAGAGCCATATGAAGTGACATCACCAGGATGTGACTCGCCCTGTATctctttttcctccctctcttcaacCAACAACTCCCtcttttgcttcatcattattcCCCCTCTTACTTTTATTTGCTGACATCTTTCTCcattctccctccttcctcctcccatcTACCTGCTTCTTGTTGTACCCAAGCAGGGAGTGTGATCACAAAAGAGCAGAGCAACACTGGACTGTACAGTGCTCTGAGCTGACTTTAGGGGGCCCTAACACAAACGGATCATATAGAGCTGCCCTCCACTCAGCACAATACTTCAGTGTTCAGGTTTTACCTTAAATTTGGTCTTAGACTTGAAAACGAAAACCAGTTCCCTGGGAAAAGCTGGTTTTCATTGTATTCTTTGATATGTATATATAATgtaatgaattattattatggCTCTGCACGTGGTTCAAGGGATGTACATATTGTATAGAAGGACATAAATGTAATGTTGTTTTTAATTAAAGATATGTGGTTGTGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214194 lncRNA upstream 1851 79101400 ~ 79101723 (+) True G188890
TU214192 lncRNA upstream 5694 79097665 ~ 79097880 (+) True G188888
TU214044 lncRNA upstream 59191 79044154 ~ 79044383 (+) True G188745
TU214018 lncRNA upstream 97255 79001094 ~ 79006319 (+) True G188721
TU213865 lncRNA upstream 239599 78863738 ~ 78863975 (+) True G188577
TU214250 lncRNA downstream 23847 79175206 ~ 79175428 (+) True G188945
TU214251 lncRNA downstream 24146 79175505 ~ 79175821 (+) True G188946
TU214271 lncRNA downstream 45729 79197088 ~ 79197592 (+) True G188965
TU214296 lncRNA downstream 87290 79238649 ~ 79238895 (+) True G188990
TU214297 lncRNA downstream 88693 79240052 ~ 79240610 (+) True G188991
XR_005039456.1 mRNA upstream 172098 78931423 ~ 78931476 (+) True LOC118944149
XM_021573061.2 mRNA upstream 523384 78578149 ~ 78580190 (+) False LOC110497055
XM_036956316.1 mRNA upstream 546306 78537027 ~ 78557268 (+) False LOC110502110
XM_021573109.2 mRNA downstream 25669 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA downstream 25671 79177030 ~ 79235909 (+) True LOC110497158
XM_021573124.2 mRNA downstream 765563 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA downstream 765563 79916922 ~ 80048182 (+) True LOC110497165
XM_021573150.2 mRNA downstream 1573001 80724360 ~ 80727535 (+) True rag2
TU213267 other upstream 523512 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 596642 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 833529 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 925991 78137513 ~ 78177583 (+) True G187260
TU212345 other upstream 1054774 78047887 ~ 78048800 (+) False LOC110502077
TU216437 other downstream 1603782 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 1613973 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 1614373 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 1914195 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 1917261 81068620 ~ 81070875 (+) True LOC110497314

Expression Profile