RNA id: XM_021573150.2


Basic Information

Item Value
RNA id XM_021573150.2
length 2112
RNA type mRNA
GC content 0.54
exon number 2
gene id rag2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80724360 ~ 80727535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTACCAGCTCAGTCTTATTGCAGTGTAGAGAGCACACCTGCCTGTCAGCAGCAGTCACAGACAGTTAACCTCAAGATCTGTAACTCATCTGAGTTAATCGAGCTTCACAAACTCTGTCAACCACTGTCTGTCTACACAGTTTAGTACTAAAGATACACAAAGACTAGCCTAACTTATTACAACATTCCACAACACTGTTCTTCGAGACGTTCAAACAGTAACGTTAGCTACTTGAGCAGAAGCCACCTGCGGTAGCATGTCTCTGCAACCACTGACTGCAGTGAACTGTGGCAGCCTCCTGCAGCCTGGCTGCTCCCTGTTACAGCTGGATGGTGACATATTTCTGTTCGGCCAAAAAGGCTGGCCCAGGCGCTCCTGTCCTACTGGGGTCTTCGGGGTACGCCTAAAGCATGGGGAGCTCAAACTGCgacccatctccttctcaaatgACTCCTGCTATCTTCCCCCTCTGCGTTGTCCCGCCGTGACCCGCCTTGAGCCCCATGATGGACACCCAGAGGGCTACCTCATCCATGGAGGCCGAACCCCAAACAACGAGATCTCCTCCAGCCTCTACCTGCTGACTCTGGACAGCCGTGGCTGCAACCGCAAAGTGACCCTGCgctgtcaggagagagagttgGTGGGAGAGCAGCCAGGGCCCCGATACGGCCACACACTTAGCATGGTGCAGAGTCTGGGCAAGCGGGCCTGCGTTGTGTTTGGGGGCAGATCCTACATGCCGGCCGGGGAGCGGAGCACAGAGAACTGGAACAGCGTTGTGGACTGCCCTCCTCAGGTGTTCATCATCGACTTAGAATTTGGCTGCTGCTCTGCCCACACCTTACCTGAGCTCACTGACGGCCAGTCCTTCCACCTAGCTTTGGCAAGAGACGACTATGTCTACTTCCTTGGTGGCCACACTCTGTCGTCTGACTCTCGTCCTCCTCGTGTGTTCTGCCTGCGTGTGGAGCTCCTGCAGGGCAGCCCTCTGCTCTCCTGTGAGCACCTGGACACCGGCCTGTCCATCTCAAGTGCTATTGCCACCCGTGTGGGGCCCTCCCATGAGTACATTATCCTGGGTGGGTATCAGTCAGAGACCCAAAAGAGGATGGAGTGCAGCAGTGTGGTGCTGGATGACTCTGGGATCAGCATCGAGCCCAGAGAGGCCCCTCAGTGGACAGGGGAAATCAGCCACAGCCACACCTGGTTCGGAGGCAGCTTGGGTGGAGGGAGCGCTCTGATTGGGGTCCCCTCTGAGGGCAGGCCAGCCCCGCCCGAAGCACATTACTTCTACCAGGTGTGCTTCCaaaaggagggggaaggagagggtgaaGATGGGAACCAGGGCTGCAGCCAGGAGTCCACAGACTTTGAGGACTCCGCCCCTCTGGAGGACTCTGAGGAGCTGTACTTCGGCCGCGAGCCCCATGAGCTGGAGGACagcagcgagggagagggggatacgtacaatgaagaggatgaggaggatgagacCCAGACAGGCTATTGGGTCAAATGTTGCCTGGGCTGCCAGGTGGACCCCAACACTTGGGAGCCCTACTACTCCACAGAACTGCTGCGGCCAGCCATGATCTACTGCTCCAAAGGGGAGGGAGGCCACTGGGTCCATGCCCAGTGTATGGAGCTGACTGAGGGCCTGCTGGTGAGGCTCTCGCAGGGAAACGGCAAGTACTTCTGCCTGGACCACGGGGGCCTGCCCCGCCAGGAGATGACCCCGCCACGTCAGGTGCTGTCCCTGAAGAGGAGCCCCATGAAACCCCAGCACAGGAAGGGCCCAATGATGCCGAAGATGACACCCGCCAAGAAGCGCTTCTTCAGGAGGCTGTTTGAGTAATGTCTGACCATGCAGTATAGTTATACTCACTCATTGATCAACTGGTTCAAAATATGTCATTCTAATTATATGGCCTAAATGCCATATCATTGTTTGATGTGCCATTGCAGCAATTTACTGTTCTCAAACTTATAAGTAAACTGAATAATTTGTTGTGCTTGTTTTTTGATTCCTTACAGTGTTCAATATTTTATGTAATAAACTAAAGTTTTGCCAAAAAATGTATGAAACCGAATTGAATAAAAATGGAA

Function

GO:

id name namespace
GO:0033151 V(D)J recombination biological_process
GO:0030183 B cell differentiation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0005634 nucleus cellular_component
GO:0043325 phosphatidylinositol-3,4-bisphosphate binding molecular_function
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function

KEGG:

id description
K10988 RAG2; recombination-activating protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216402 lncRNA upstream 1780 80721510 ~ 80722580 (+) True G191024
TU216404 lncRNA upstream 15630 80708098 ~ 80708730 (+) True G191025
TU216408 lncRNA upstream 20033 80704097 ~ 80704327 (+) True G191028
TU216363 lncRNA upstream 75372 80648652 ~ 80648988 (+) True G190986
TU216354 lncRNA upstream 84273 80639797 ~ 80640087 (+) True G190977
TU216551 lncRNA downstream 183193 80910728 ~ 81327424 (+) True G191161
TU216557 lncRNA downstream 186765 80914300 ~ 80924722 (+) True G191167
TU216603 lncRNA downstream 261352 80988887 ~ 80991854 (+) True LOC110497237
TU216636 lncRNA downstream 304507 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA downstream 304507 81032042 ~ 81033476 (+) True LOC118942351
XM_021573124.2 mRNA upstream 676178 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA upstream 676178 79916922 ~ 80048182 (+) True LOC110497165
XM_021573109.2 mRNA upstream 1488451 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA upstream 1488451 79177030 ~ 79235909 (+) True LOC110497158
XM_021573107.2 mRNA upstream 1573001 79103574 ~ 79151359 (+) False LOC110497132
XM_021573226.2 mRNA downstream 52524 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA downstream 52524 80780059 ~ 80977313 (+) True furinb
XM_021573270.2 mRNA downstream 263443 80990978 ~ 80994869 (+) False LOC110497237
XM_021573248.2 mRNA downstream 264649 80992184 ~ 80994869 (+) False LOC110497237
XM_021573261.2 mRNA downstream 264656 80992191 ~ 80994869 (+) False LOC110497237
TU213267 other upstream 2144298 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 2217428 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 2454315 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 2546777 78137513 ~ 78177583 (+) True G187260
TU212345 other upstream 2675560 78047887 ~ 78048800 (+) False LOC110502077
TU216437 other downstream 27606 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 37797 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 38197 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 338019 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 341085 81068620 ~ 81070875 (+) True LOC110497314

Expression Profile