RNA id: XM_036933301.1


Basic Information

Item Value
RNA id XM_036933301.1
length 5177
RNA type mRNA
GC content 0.50
exon number 4
gene id rag1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80727903 ~ 80734996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aCTCAGCTGTTAGACTCTAATGAAAGTTCAGTctgagagatacaaagagagctGGGAGTAAAGCAGACTTCCAAACGTCCCAGGGAAAAATCACACtgggtacatacacacacagagatggagagaaggaaaaTGACACTATGGGCACGCCAATGATGAGACATGagccGTTGCTGACACTATGGAGGAGACATATGCCCCCCGGTGCTCCATGCCGGCCGAGCTCCATCATCCCTACTCCAAGTTCTCAGACTGGAAGTTCAAGCTGTTCCGGGTCAGGTCCATGGAGAGGGCCCCACTGCCCGGGGAGATGCAGCTAGAGAGAGGGGCCTTGTCTGGTGTTGTGGCCTCTGCACCCCTGGGGGAAACTGTGGGGGATGTGGTGGGTCTCCCAGGGAGTGTGATGAAGCTTTGCCTGGGGGGTAAGAGCAAGGAGAACGTAGAGGGCCCGGGAAAGAGAGTGGACCTGAAACTCCAGGAGATGGACACACACATGAACCACCTCAGgtgtctgTGCCGTCTCTGTGGCGGGGCCCTGAGGAAAGCCAAAGGTCCAGAGCATGAAGTCCAGGGGCTTCTGGACGAGGCTAGCATGAGTGCCCTGCGTAGGATGGGCTGCAAGGCCACCAGCTGGCCAGAGGTCATCCTCAAGGTCTTCAAAGTGGACGTGGCGGGGGACATGGAGGTCGTCCATCCACCATTCTTCTGCCAGCGCTGCTGGACATTGGCCATGCGAGGAGGGGGCTTCTGCAGCTTCTCCAGGACCCATGTCCCTGGGTGGAGACCCCACaccaccctctgcctcctctGCCACCCCAagaaaccctcactacagaggagagggaggaagaggaggaagcctACTCGTGGAGCCCAACACCTGGCCAAGAGGACCAAGTGGGACCTCCAGGATAATGCTGCTATTGTTGGTGAGAAGAGAGCCTGGAGAACAGTGATAGATCCTCCCCAGGGACCTGGACTTAGACCCTGGGTGAGATCCAGCGTCCAGAGAGCTCAGTGGGTGAAGAGCATCACCCTCTGCCAGAAAGAGCACCTTAGTGCCAGACTGCTGTCCGAGGACCTCCCTGTGGACTTCCTGAGCTCAGTCACCTGTCAGGTGTGTGACCACCTGTTGTCTGAGCCCGTCCAGTCCCCCTGCAGACACCTCTTCTGCCGCAGCTGCATCGCTAAATATATTTACTCTCTGGGCCCCCACTGCCCGGCTTGCACCCTGCCCTGCGGCCCTGCCGACCTTACTGCCCCAGCTAAGGGCTTCCTGGGGGTCCTGCACTCCCTGCCGCTGCTTTGCCCCAGAGAGAGCTGTGGGGAGCAGGTACGGCTGGACTCCTTCAGAGCCCACTGCTTGGGTCACCATCTGGAGGAAGTGGATGGGGACCACAAGTCAGCGGAAAATAGCCTGGACAACTTCCTGCCTGTCAACAAAGGGGGAAGGCCCCGACAGCATCTCTTGTCACTGACGAGGCGTGCCCAGAAGCACCGGCTGAGGGACCTGAAGACCCAGGTGAAGGTGTTTGCAGAGAAGGAAGAAGGTGGAGACACCAAGTCGGTGTGCCTGACCCTGTTCCTGCTAGCTTTGAGGGCTGGAAACGAACACCGGCAGGCAGACGAACTGGAGGCCATGATGCAAGGCAGGGGCTTTGGCCTGCATCCTGCTGTGTGTCTGGCCATCCGGGTCAACACATTCCTGAGCTGCAGCCAGTACCACAAGATGTACCGCACCGTCAAGGCCACCAGTGGGCGCCAGATCTTCCAGCCACTACACACCTTACGCGCTGCAGAGAAGGAGCTCCTCCCAGGCTACCACCCCTTTGAGTGGCAGCCGGCTCTCAAGAGTGTGTCCACATCCTGCCATGTGGGGATCATTGATGGGCTATCAGGGTGGATCGCTTCGGTAGACGACTCCCCAGCAGATACAGTCACGCGACGGTTTCGCTACGACGTGGCCCTGGTGTCAGCCCTGAAGGACCTGGAGGAGGACATCATGGAGGGGCTGAGAGAGCGAGGCCTGGAGGACAGTGCTTGCACCTCGGGCTTCAGCGTTATGATCAAGGAGTCCTGCGATGGTATGGGGGACGTCAGTGAGAAGCATGGCGGAGGGCCGGCCGTCCCGGAAAAGGCTGTGCGTTTCTCCTTCACCATCATGTCCGTCTCTATTCAAGCTGAGGGAGAAGATGAGGCGATCACCATTTTCCGGGAGCCCAAGCCCAACTCAGAGATGTCCTGCAAGCCGCTAAGCCTGATGTTTGTGGACGAGTCGGACCACGAGACTCTCACAGGCGTCCTGGGGCCTGTGGTGGCCGAAAGGAATGCTATGAAGCACAGCCGTCTCATCCTGTCTGTGGGCGGCCTTTCTCGCTCCTTCCGCTTCCACTTCCGGGGCACGGGCTATGATGAGAAGATGGTGCGAGAGATGGAGGGTTTGGAGGCCTCTGGCTCCACTTACATCTGCACGCTGTGTGACTCCACTCGGGCAGAGGCCTCCCAAAACATGACTCTCCACTCTGTCACCCGCAGCCATGACGAGAACCTGGAGCGCTACGAACTTTGGAGGACCAACCCTCATTCTGAGTCAGCTGAAGAGCTGCGAGACCGAGTCAAAGGCGTCTCTGCCAAGCCCTTCATGGAGACCCAGCCCACACTGGACGCCCTGCACTGTGATATCGGCAATGCCACTGAGTTCTACAAGATCTTCCAGGATGAGATAGGGGAGGTCTATCACAAGGCAAACCCCAGCCGGGAGCAGCGTCGGAGCTGGCGGGCCGCCCTGGACAAGCAGCTGAGGAAGAAGATGAAGCTGAAGCCTGTGATGAGGATGAATGGGAACTATGCACGGAAGCTGATGACCCGGGAGGCAGTGGAGGCAGTGTGTGAGCTGGTGTGCTCAGAGGAGCGTCAGGAAGCTCTGAGGGAGCTGATGGGGCTCTACATCCAGATGAAGCCTGTGTGGCGCTCCACCTGCCCGGCCAAGGAGTGCCCAGACGAGCTCTGCCGGTATAGCTTCAACTCCCAACGCTTTGCAGAGCTGCTCTCCACCGTCTTCAAGTACAGGTATGACGGAAAGATCACCAACTACCTGCACAAGACCTTGGCCCATGTGCCAGAGATTGTGGAGAGGGATGGCTCCATCGGGGCCTGGGCCAGCGAGGGGAATGAGTCTGGGAACAAGCTGTTCAGACGGTTCAGGAAGATGAATGCCCGCCAGTCCAAGACCTTTGAGCTGGAGGACGTGCTGAAGCACCACTGGCTCTACACATCCAAGTACCTGCAGAAGTTCATGGAAGCTCACAAGGACTCTGCCAAAGCTCTGCAGGCCACCATTGACACTGTGGGGAGTCAGGAGACACAGGAGGATGCTGACATGTCACTGGATGTCCcagacttttgaaaaaaataaataatttgacATTTCTTTGGAACTTTATGGATTACAGGAGGGATATGTTTTAGCAGGAGCATGTCTAATTCTAAtctgtctgtactgtactgttctgcaGGGGTGGTCTGGGACCAAAAATCAGTCCTGGCATTCCTAGCATGTTAGCCCAGTGTTTTCCTTGAGGCCCACACAGCAGCCCATTTTTTTCCTCTAGTCCCCCACACCAGCAAAACATTTTCCCTTGAGGCCCCaattattagccagataatgatAATTTTGTGCAAAAAAAACCAAAGTTAGACATGTCCACTAGGCTAAAAAATGGACCCGCTAGTATAGCATTTCCACGAAAAGCCAGATGACCAGTGCGCCCCTGCTGTTCTGTTTTAATCTTAATATTTACTCTACAATATGAACTATGTATTAGTAGTGATGTAAGAGGAAGATACTTTATTCTGTAAAAACATTATTATTAATTGTCATAATCCAAAAAAGGTGGCACTTTTTTATTTGATTCATTATTTACTCTAAGGacatttgaaaatattttttacCTTAAATTTAATTTCCATACATAATTCCCAAAtgttgttgcattttatattggTATTTTATATTAGTTCATAATAATTTGATAGTGTTTTATCTCTGGGTGCCTATGAAATGTGGGACAGTTTATTGTATTGCATGGGTTATGACACATCCATGAATTTATCCAGTGGGTTTATTTATGGGAACAAATGAAAGCACTGTAAGTCATGGAATGGAAATTGTGATAAAGGAGCTCACATTTATGATCAGTGTATTAGTTTATCTCCAGTCCTGGAGCAAAATGGAATCATATAGACTCAAATTGTCTTCGTTTCAGGGCTGCCATCTAAAAATATTGCTTTAGAGCTTCATATTTGGGTCCTGAAGTCCAAAATGGGGGCCTGGGTGACTTTGAAACCATCTTTATCTGTTTTAGCATTTGCACAGTGAAGGAGAAATAATACCATTCTACCTCTTTTCATAAAATAACATATAAACAGCCCTTTTTGTTGACCGCATGAAAATGCAGTAGGCTCCATTACTAGGCCTAACACCTCTAGGCTTGACAGAAGGATGTTTTTAGATGATCTTTATTGAATCCTCACACACCCTGGTTCTATGCTTCTTCTGGAGCGAGTAAACAGGGAAGCAAGTGAGCCTTGAGGGGAACTGAAATGATTTGATAGTTtatttgtttgattgattgatgttatTGTTTATCTCTGATGACACCATTTTGAGTTGTGACAGGCAATTTTTATATTTGACACATTAAGTGTTCTAGCTCTATTTTACTGTCATGACTTTAACCTGATGATGTACAGATTTTCATAATGTATAATATTTAGTTTAAACAACAGTCACATAATAACATCACGTTTTACATGACGGTATGTTAAATAATGtaatttccattattaaattgCGTTTGCTTCATGAAGGATGATGGATATGGTTTGTGTGAATCTCATATCAGCGGTGTATTCAATCTGTTGCTTTGTCATGTTTCAagtgtacatttaaactcaggaaAATAACAACTGTTGCCAAAAACACTCactcatttgttttatttgaatgAAAATAATGATACGTATACCTGTTGCACATTTGTTCACTGTTCACTTGTTTAATGTGTTTGTTCATTTGATTTGGTGGTTTTATTGGCCTTTATTGTTTCACGATTACTGAAGTATTTGTTCATACCTCTCTACAATACTGTTAATGTACTGAAAATGTAGCAAACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216951 lncRNA downstream 71893 80655809 ~ 80656010 (-) True G191509
TU216939 lncRNA downstream 85569 80642121 ~ 80642334 (-) True G191497
TU216936 lncRNA downstream 91227 80636401 ~ 80636676 (-) True G191494
TU216341 lncRNA downstream 101289 80626415 ~ 80626614 (-) True G190964
TU216340 lncRNA downstream 101787 80625899 ~ 80626116 (-) True G190963
TU217027 lncRNA upstream 70473 80805156 ~ 80825746 (-) True G191582
TU217116 lncRNA upstream 179975 80914658 ~ 80919928 (-) False G191668
TU217117 lncRNA upstream 179975 80914658 ~ 80919928 (-) True G191668
TU217119 lncRNA upstream 180996 80915679 ~ 80920876 (-) False G191669
TU217120 lncRNA upstream 180996 80915679 ~ 80920876 (-) True G191669
XM_021573163.2 mRNA downstream 2484 80708099 ~ 80725419 (-) False iftap
XM_021573178.2 mRNA downstream 2621 80708099 ~ 80725282 (-) False iftap
XM_021573173.2 mRNA downstream 4159 80708100 ~ 80723744 (-) True iftap
XM_021573118.2 mRNA downstream 1333914 79386283 ~ 79393989 (-) False ehf
XM_021573122.2 mRNA downstream 1333914 79386283 ~ 79393989 (-) True ehf
XM_021573191.2 mRNA upstream 20367 80755050 ~ 80765470 (-) True si:ch211-256a21.4
XM_021573211.2 mRNA upstream 31272 80765955 ~ 80776162 (-) False accs
XM_036956464.1 mRNA upstream 31620 80766303 ~ 80773511 (-) False accs
XM_036956463.1 mRNA upstream 31620 80766303 ~ 80773977 (-) False accs
XM_036956462.1 mRNA upstream 31620 80766303 ~ 80773994 (-) False accs
TU216232 other downstream 175419 80552127 ~ 80552484 (-) True G190857
TU215157 other downstream 967276 79760039 ~ 79760627 (-) True G189806
TU214582 other downstream 1361334 79365849 ~ 79366569 (-) True G189256
TU214411 other downstream 1502905 79223230 ~ 79224998 (-) True G189093
TU213521 other downstream 2110596 78616582 ~ 78617307 (-) True G188257
TU217118 other upstream 180996 80915679 ~ 80921415 (-) False G191669
TU217319 other upstream 457845 81192528 ~ 81193845 (-) True cart2
TU219436 other upstream 2166957 82901640 ~ 82912504 (-) True G193745
TU219446 other upstream 2271147 83005830 ~ 83007976 (-) True G193755
TU219891 other upstream 2485339 83220022 ~ 83223144 (-) True LOC110502187

Expression Profile