RNA id: NM_001124737.1


Basic Information

Item Value
RNA id NM_001124737.1
length 3222
RNA type mRNA
GC content 0.59
exon number 5
gene id rag1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80727903 ~ 80734996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGGAGACATATGCCCCCCGGTGCTCCATGCCGGCCGAGCTCCATCATCCCTACTCCAAGTTCTCAGACTGGAAGTTCAAGCTGTTCCGGGTCAGGTCCATGGAGAGGGCCCCACTGCCCGGGGAGATGCAGCTAGAGAGAGGGGCCTTGTCTGGTGTTGTGGCCTCTGCACCCCTGGGGGAAACTGTGGGGGATGTGGTGGGTCTCCCAGGGAGTGTGATGAAGCTTTGCCTGGGGGGTAAGAGCAAGGAGAACGTAGAGGGCCCGGGAAAGAGAGTGGACCTGAAACTCCAGGAGATGGACACACACATGAACCACCTCAGgtgtctgTGCCGTCTCTGTGGCGGGGCCCTGAGGAAAGCCAAAGGTCCAGAGCATGAAGTCCAGGGGCTTCTGGACGAGGCTAGCATGAGTGCCCTGCGTAGGATGGGCTGCAAGGCCACCAGCTGGCCAGAGGTCATCCTCAAGGTCTTCAAAGTGGACGTGGCGGGGGACATGGAGGTCGTCCATCCACCATTCTTCTGCCAGCGCTGCTGGACATTGGCCATGCGAGGAGGGGGCTTCTGCAGCTTCTCCAGGACCCATGTCCCTGGGTGGAGACCCCACaccaccctctgcctcctctGCACCCCAagaaaccctcactacagaggagagaggaagaggaggaagcctACTCGTGGAGCCCAACACCTGGCCAAGAGGACCAAGTGGGACCTCCAGGATAATGCTGCTATTGTTGGTGAGAAGAGAGCCTGGAGAACAGTGATAGATCCTCCCCAGGGACCTGGACTTAGACCCTGGGTGAGATCCAGCGTCCAGAGAGCTCAGTGGGTGAAGAGCATCACCCTCTGCCAGAAAGAGCACCTTAGTGCCAGACTGCTGTCCGAGGACCTCCCTGTGGACTTCCTGAGCTCAGTCACCTGTCAGGTGTGTGACCACCTGTTGTCTGAGCCCGTCCAGTCCCCCTGCAGACACCTCTTCTGCCGCAGCTGCATCGCTAAATATATTTACTCTCTGGGCCCCCACTGCCCGGCTTGCACCCTGCCCTGCGGCCCTGCCGACCTTACTGCCCCAGCTAAGGGCTTCCTGGGGGTCCTGCACTCCCTGCCGCTGCTTTGCCCCAGAGAGAGCTGTGGGGAGCAGGTACGGCTGGACTCCTTCAGAGCCCACTGCTTGGGTCACCATCTGGAGGAAGTGGATGGGGACCACAAGTCAGCGGAAAATAGCCTGGACAACTTCCTGCCTGTCAACAAAGGGGGAAGGCCCCGACAGCATCTCTTGTCACTGACGAGGCGTGCCCAGAAGCACCGGCTGAGGGACCTGAAGACCCAGGTGAAGGTGTTTGCAGAGAAGGAAGAAGGTGGAGACACCAAGTCGGTGTGCCTGACCCTGTTCCTGCTAGCTTTGAGGGCTGGAAACGAACACCGGCAGGCAGACGAACTGGAGGCCATGATGCAAGGCAGGGGCTTTGGCCTGCATCCTGCTGTGTGTCTGGCCATCCGGGTCAACACATTCCTGAGCTGCAGCCAGTACCACAAGATGTACCGCACCGTCAAGGCCACCAGTGGGCGCCAGATCTTCCAGCCACTACACACCTTACGCGCTGCAGAGAAGGAGCTCCTCCCAGGCTACCACCCCTTTGAGTGGCAGCCGGCTCTCAAGAGTGTGTCCACATCCTGCCATGTGGGGATCATTGATGGGCTATCAGGGTGGATCGCTTCGGTAGACGACTCCCCAGCAGATACAGTCACGCGACGGTTTCGCTACGACGTGGCCCTGGTGTCAGCCCTGAAGGACCTGGAGGAGGACATCATGGAGGGGCTGAGAGAGCGAGGCCTGGAGGACAGTGCTTGCACCTCGGGCTTCAGCGTTATGATCAAGGAGTCCTGCGATGGTATGGGGGACGTCAGTGAGAAGCATGGCGGAGGGCCGGCCGTCCCGGAAAAGGCTGTGCGTTTCTCCTTCACCATCATGTCCGTCTCTATTCAAGCTGAGGGAGAAGATGAGGCGATCACCATTTTCCGGGAGCCCAAGCCCAACTCAGAGATGTCCTGCAAGCCGCTAAGCCTGATGTTTGTGGACGAGTCGGACCACGAGACTCTCACAGGCGTCCTGGGGCCTGTGGTGGCCGAAAGGAATGCTATGAAGCACAGCCGTCTCATCCTGTCTGTGGGCGGCCTTTCTCGCTCCTTCCGCTTCCACTTCCGGGGCACGGGCTATGATGAGAAGATGGTGCGAGAGATGGAGGGTTTGGAGGCCTCTGGCTCCACTTACATCTGCACGCTGTGTGACTCCACTCGGGCAGAGGCCTCCCAAAACATGACTCTCCACTCTGTCACCCGCAGCCATGACGAGAACCTGGAGCGCTACGAACTTTGGAGGACCAACCCTCATTCTGAGTCAGCTGAAGAGCTGCGAGACCGAGTCAAAGGCGTCTCTGCCAAGCCCTTCATGGAGACCCAGCCCACACTGGACGCCCTGCACTGTGATATCGGCAATGCCACTGAGTTCTACAAGATCTTCCAGGATGAGATAGGGGAGGTCTATCACAAGGCAAACCCCAGCCGGGAGCAGCGTCGGAGCTGGCGGGCCGCCCTGGACAAGCAGCTGAGGAAGAAGATGAAGCTGAAGCCTGTGATGAGGATGAATGGGAACTATGCACGGAAGCTGATGACCCGGGAGGCAGTGGAGGCAGTGTGTGAGCTGGTGTGCTCAGAGGAGCGTCAGGAAGCTCTGAGGGAGCTGATGGGGCTCTACATCCAGATGAAGCCTGTGTGGCGCTCCACCTGCCCGGCCAAGGAGTGCCCAGACGAGCTCTGCCGGTATAGCTTCAACTCCCAACGCTTTGCAGAGCTGCTCTCCACCGTCTTCAAGTACAGGTATGACGGAAAGATCACCAACTACCTGCACAAGACCTTGGCCCATGTGCCAGAGATTGTGGAGAGGGATGGCTCCATCGGGGCCTGGGCCAGCGAGGGGAATGAGTCTGGGAACAAGCTGTTCAGACGGTTCAGGAAGATGAATGCCCGCCAGTCCAAGACCTTTGAGCTGGAGGACGTGCTGAAGCACCACTGGCTCTACACATCCAAGTACCTGCAGAAGTTCATGGAAGCTCACAAGGACTCTGCCAAAGCTCTGCAGGCCACCATTGACACTGTGGGGAGTCAGGAGACACAGGAGGATGCTGACATGTCACTGGATGTCCcagacttttga

Function

GO:

id name namespace
GO:0033151 V(D)J recombination biological_process
GO:0010390 histone monoubiquitination biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0030183 B cell differentiation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10628 RAG1; V(D)J recombination-activating protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216951 lncRNA downstream 73664 80655809 ~ 80656010 (-) True G191509
TU216939 lncRNA downstream 87340 80642121 ~ 80642334 (-) True G191497
TU216936 lncRNA downstream 92998 80636401 ~ 80636676 (-) True G191494
TU216341 lncRNA downstream 103060 80626415 ~ 80626614 (-) True G190964
TU216340 lncRNA downstream 103558 80625899 ~ 80626116 (-) True G190963
TU217027 lncRNA upstream 71432 80805156 ~ 80825746 (-) True G191582
TU217116 lncRNA upstream 180934 80914658 ~ 80919928 (-) False G191668
TU217117 lncRNA upstream 180934 80914658 ~ 80919928 (-) True G191668
TU217119 lncRNA upstream 181955 80915679 ~ 80920876 (-) False G191669
TU217120 lncRNA upstream 181955 80915679 ~ 80920876 (-) True G191669
XM_021573163.2 mRNA downstream 4255 80708099 ~ 80725419 (-) False iftap
XM_021573178.2 mRNA downstream 4392 80708099 ~ 80725282 (-) False iftap
XM_021573173.2 mRNA downstream 5930 80708100 ~ 80723744 (-) True iftap
XM_021573118.2 mRNA downstream 1335685 79386283 ~ 79393989 (-) False ehf
XM_021573122.2 mRNA downstream 1335685 79386283 ~ 79393989 (-) True ehf
XM_021573191.2 mRNA upstream 21326 80755050 ~ 80765470 (-) True si:ch211-256a21.4
XM_021573211.2 mRNA upstream 32231 80765955 ~ 80776162 (-) False accs
XM_036956464.1 mRNA upstream 32579 80766303 ~ 80773511 (-) False accs
XM_036956463.1 mRNA upstream 32579 80766303 ~ 80773977 (-) False accs
XM_036956462.1 mRNA upstream 32579 80766303 ~ 80773994 (-) False accs
TU216232 other downstream 177190 80552127 ~ 80552484 (-) True G190857
TU215157 other downstream 969047 79760039 ~ 79760627 (-) True G189806
TU214582 other downstream 1363105 79365849 ~ 79366569 (-) True G189256
TU214411 other downstream 1504676 79223230 ~ 79224998 (-) True G189093
TU213521 other downstream 2112367 78616582 ~ 78617307 (-) True G188257
TU217118 other upstream 181955 80915679 ~ 80921415 (-) False G191669
TU217319 other upstream 458804 81192528 ~ 81193845 (-) True cart2
TU219436 other upstream 2167916 82901640 ~ 82912504 (-) True G193745
TU219446 other upstream 2272106 83005830 ~ 83007976 (-) True G193755
TU219891 other upstream 2486298 83220022 ~ 83223144 (-) True LOC110502187

Expression Profile