RNA id: XM_021573191.2


Basic Information

Item Value
RNA id XM_021573191.2
length 3133
RNA type mRNA
GC content 0.43
exon number 4
gene id si:ch211-256a21.4
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80755050 ~ 80765470 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatgTTTATGACGTGGTCATCTATAGTACCATTCATGAGCTTTTAAGACAGTTGTTGTTCATACTGTATACATATGTACAGTAAATGGTTCTGAATATTTCACCAAGTCTTAATGTTGATAAATTGGTCAACGTTCAATAAAAGCCTTATTTTTACCATTTGTGGAGAAGTACCGTATGTGGTTTTCCAAATCAATTCTAGTGAAAGCCTAAATACTGTAGACTACATTTTTTAGTTGGTAAATCAAGGAAGTGAAACTCACATTAAATAGTTTTGAAACTCAAATTATTGAAGTATAATGTTGCCTGTTTTTGTTACTGTAGATATTCCAAGGACACAACATAATCTGTTTTTGCCTGCCTTTTGATACATAGTAATTGACCAGTAAAAGTTGCATAGGCTGTTGTTGACAGTTTGGCTCTGGGCTGGTGGGGTTTTTCCAAGATGACCCTGCTCTGGCTGGGGGCTAGAAAAGGAAGCTGGATGTCTTAATTTGAGGTGTGAAACacgaagtgtttgtgtgtgttaatgtgtgtgtatgtgtggcggGGGTATTTCCCCCCCCATGATGATAACCTGTCCTTTGTACACACCTGCAGAGTGAGGGAACAGGGACCAAGCTTTAAAAGTGTCCTCACCCTTCAAAACAGATATaaatgcagtaaaaaaaaaataagttgTTCGACTATTGTCCTCTCACTACCACGGTGTatatggtagagggagagagagctgtttTCACTTTCCAAACGGCATGAGCCTTTGTGTCACAGCCAAGAGATGCCGAGGGAACTCAAACACTGAGTGGGGGGTTTCCACTGTAGTGGGAAGGCGGAGAGCAACACAGAGGAAAATATTTAGTGTCATATTCCACCACTATGTGTGTGTTCCTGACTGGTACACTGGTAGTGTGAGTCACTGTATCTGAGTGGTCGATGGCTGTGAACTCATTATACAGTAGTCCATCACGCATCTGACCTGCTCCTGCTCTCCTCATGCTGGGAAGATTTATACAAAGCTTCATCGCACACTCTAATCCAGCATTCAGGAGTCCACAGTTCAGACAGAGTTCAACATAACAAGATTGTCTGATCCTCTGTATCAACAAAACAAAACTAAAGCCCTCTCAGTCTGTCAGTATGAAGGTGTTAGAGGTGGGAGACTCAGTGAGTCAGTTCAGGTTGGCTGAGTCATGTGTGGGGCTGGCAGGGTGTCTGTGCGTGGCCTACTCTGTTTGGACCCCTCGCTGGCTCAATGACCAGGGACTGTGGTCTATAGGCAACAACAgcaccaacacagacagtgatGGTGACCAGACTGGGGACATCATCTTTAACGCCCTGGAGGCAGAGCAAGTGTTTGGGGTGCTGTCATTCCTCATGGCTGTGAATTCAGGGGCTCTGTGCCTCGTGTTCGCCCTCTGCTGGACATCCCAGACAGTGCGCTCTTACTCCAACACCCGCTCCCTCCTCATGGCAGGCCAGGCCCTCTACCCCACCGTCTTGCTGCTCCTCACTCTAGGACCCACAGgattcttcttcCTCCTCAGCTGGTCCCTCTTCACCTACCAGCACCGGGTGGAGATTAGTGATGACTTCACATGCCTGGGCTCCTCCTTTTGGCTGGGTACCCTGGGCTGGGCCCTGCTATTGGTTGCTCTGCCTGTGGTCTTCCTGGTGGAGCAGTGTGTGGTCCCGGACATCCTGCCAGATCTCATGAAGGCTGCTGATGGGTGGCGGGGCGCCTCCCAGGTACCGTACGCCCAGCACTCGTTCATCGTGAGTCACCAGCGTTGTCATGAAGACCAGAGTGATGAAGACATTGCGAGAGGCCTGAGGAGGTACATGTCTGTACCCtgagaggaggaatagagaggacaCAGGACAGTGATGGAGTATTAGTGTAACCTTCTTCAGGCTCAGAGACTGAGCTAACTGCAGAATGGGACTGGACTGGGCACACAGCTGATAGGGGTCCATGTTCACACTAGCAGTTCACCAGGGAGAGGAGCTTCTAGTCTGTGTCTGTATCAGAGATTTCTCCACTGTAGGATAATGTTTACAGACGCACTCTGAGAATATGTAATATTagactaatcaaatcaaatttcattggTTGTgcacacatattttgcagatgttatcgcagatgcagcgaaatgcttatgtttctagctcaaacagtgcagtaatacctaacaaaacAAATGACCAATTAGCCCttttaaattataaacttggattagctaacacaacgtgccattagaacacaggagtgatggttgctgataatgggcctctgtacgcctatgtagatattccataaaaaatcagccgtttccagctaaaatggccatttacaacattaacaatatctacactgtatttctgatcaattttatgttattttaatggacttgAGAATgagaaaaatgtgcttttctttcaaaaacaaggacatttctatgcccaaacttttgaacggtagtgtatatatacacaaatataatggtgtgtgtatagacagtatatgaatagaaaagttGTGTACAGGAGTAGATATATAGGATAAGCattgaatagaatacagtatatacatataaagtgggtaaaacagtatgtaaacattattaaagtgaccaaaaGTGTCAATGCTGAGATAAAGGGTTCTTGTCAAGCAAGGAACAATTTATTATTTGTAGTTGTTTGTTGCCAAGCACACTTTCAGTAAGATTTTCTGTGTAGTAAAGGAAACATTTATGTTACAATAGCAGCCTCATGTGGTGAGTATGACCAAGGTTTGATGTTGAAAAAGCTATTTTTGATACAGCTTGGCAGCAGTGTTCTGTTCGCAAGTATTCAACATTAATTAGTGGAAAGTCACACATTTTGGTTGTTTGTGTACAAAGTGGGATCACTACTTGTTGAATTTAGATGAAAGTGATACATACATTTAGAGTTTAACTAATACTTCTAAGACAGTCCTATGTGAATGTGCATTTTCTCAGTGAGCTTGATACTCATCACCACTATAAAGTGACTGATATCACAACGTTTTTGCAATGGGACTGTGATATTATTGATATTGTACCTTTAAAAAACAGATGAATAAACTGCTGCTTTTATTTACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216951 lncRNA downstream 99040 80655809 ~ 80656010 (-) True G191509
TU216939 lncRNA downstream 112716 80642121 ~ 80642334 (-) True G191497
TU216936 lncRNA downstream 118374 80636401 ~ 80636676 (-) True G191494
TU216341 lncRNA downstream 128436 80626415 ~ 80626614 (-) True G190964
TU216340 lncRNA downstream 128934 80625899 ~ 80626116 (-) True G190963
TU217027 lncRNA upstream 39686 80805156 ~ 80825746 (-) True G191582
TU217116 lncRNA upstream 149188 80914658 ~ 80919928 (-) False G191668
TU217117 lncRNA upstream 149188 80914658 ~ 80919928 (-) True G191668
TU217119 lncRNA upstream 150209 80915679 ~ 80920876 (-) False G191669
TU217120 lncRNA upstream 150209 80915679 ~ 80920876 (-) True G191669
XM_036933300.1 mRNA downstream 20054 80727903 ~ 80734996 (-) False rag1
XM_036933301.1 mRNA downstream 20367 80727903 ~ 80734683 (-) False rag1
NM_001124737.1 mRNA downstream 21326 80729674 ~ 80733724 (-) True rag1
XM_021573163.2 mRNA downstream 29631 80708099 ~ 80725419 (-) False iftap
XM_021573178.2 mRNA downstream 29768 80708099 ~ 80725282 (-) False iftap
XM_021573211.2 mRNA upstream 485 80765955 ~ 80776162 (-) False accs
XM_036956464.1 mRNA upstream 833 80766303 ~ 80773511 (-) False accs
XM_036956463.1 mRNA upstream 833 80766303 ~ 80773977 (-) False accs
XM_036956462.1 mRNA upstream 833 80766303 ~ 80773994 (-) False accs
XM_021573203.2 mRNA upstream 833 80766303 ~ 80776358 (-) False accs
TU216232 other downstream 202566 80552127 ~ 80552484 (-) True G190857
TU215157 other downstream 994423 79760039 ~ 79760627 (-) True G189806
TU214582 other downstream 1388481 79365849 ~ 79366569 (-) True G189256
TU214411 other downstream 1530052 79223230 ~ 79224998 (-) True G189093
TU213521 other downstream 2137743 78616582 ~ 78617307 (-) True G188257
TU217118 other upstream 150209 80915679 ~ 80921415 (-) False G191669
TU217319 other upstream 427058 81192528 ~ 81193845 (-) True cart2
TU219436 other upstream 2136170 82901640 ~ 82912504 (-) True G193745
TU219446 other upstream 2240360 83005830 ~ 83007976 (-) True G193755
TU219891 other upstream 2454552 83220022 ~ 83223144 (-) True LOC110502187

Expression Profile