RNA id: XM_021573226.2


Basic Information

Item Value
RNA id XM_021573226.2
length 4102
RNA type mRNA
GC content 0.54
exon number 15
gene id furinb
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80780059 ~ 80977313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTGGAGTGTGGACGTAGCTACTTCCTGTGTTTTTTGCTATTTTATTATAGGTAGCAAAGTGGACAAATATATCAGTTTCCTGTATAAAGAAATGTATAACCTTTTGATAATTTTAGAACATGCTTTGAATATATTAGTGTGTTCGAGTAGAGCAGTATGCATATCACGGAACTGTTTTGAACgctctagctagctacatagaaAAACAACTGGGTTTTGAAGTACTACTCGTTCGAGATAACGATTAATAAGACGAGGAAAGTCTACTACGAACAAAGTGTAGCAGAGTGTTAGGTGTGACAATATTGCAGTAGCAAGGTACACGGGGAGACCTTGAGTGGTGTCTGAGTATGTTGAGTGGTGTCTGACTACGTAACTCCACAGAGTTCCTGAGCAACGCCGCGGGAGAGAGCTGTCAACCGGGCAGCTGAGACGTGACGTGGACATTTTATCCGACAAATTGGTGCAAATGTCATAGCCAACGTGTATTGTTTTGCTCTTTGAGGAAAGAGGTTGGAGAGGTATCCCGAAGTGGCGGGGTGGGAGGGAACGAATTAACCAGGGAAGCATATATGGTAATATAAACTACAAGGCAAGAGCGCATTCTCTGCCTTTTATTCCAGTGTCTGACAGAACTGTCGATACTAGATAGCTACTTCACTTACCAAGTTGGAGCTCGGAGTTCGGGGTACATTGGTGCTATAGCTACACAGGACCATCTGACTGATGCGCatatgttttatttgatgacatGAAGTCAGCCCTATAACGCTTGCTGATTGAGTGCACGTCCCCATCACAGAAATAGCTCTTGGTCACTGCTCTACTTTGCTGCTGTGAGGGAGCTCAGGGCTGTGACTGGTAAGCAGTGAGACTTCTCCAccccagacagacggacagagtgCCTCTGTCCGGTGCCCCTGCTCTCCTTTTCATGGATGCCAGGCTGGCCCTGCTGCAGCTTGGGACTCTCCTGGGTCTCCTGTCCTTAGCACTGGAGTTTACTGCTGAACCGACCGCTGCCGAGGAGGTCTACACTAACACCTGGGCAGTCCATATAGAGGGAGGACCACAAGAGGCTGACCGCATCTCCAGGAAACATGGTTTCATCAACCACGGCAATGTGTTTGGGGGTTATTATCACTTCCGGCATCACACCGTGGTGAAGAGATCCCTATCAGGCCACAGGGGAACACACGTACGACTACAGAAGGAACCACAGGTGAGGTGGGCGGAACAGCAGGTGTCTAGgcggaggaaaaagagggatgtCTACACCGAACCATCCGACCCCAAATTCCCCCAGCAGTGGTACCTGGTGAGCAAGTCCAACCCCAGCCAAGCAGACCTGAATGCCAAGGGAGCGTGGTCCCAGGGTTACACTGGGAGAGGAGTTGTGGTCACCATCCTGGATGACGGTATAGAGAAAGACCACCCAGACCTGGCCACCAACTATGACCCTGAGGCCAGCTATGATGTCAACGATGGAGACTCTGACCCCCAGCCACGCTACACACAGCGCAACGAGAACAGACATGGAACACGGTGTGCTGGAGAGGTTGCTGCAGCCGCCAACAACAACGTATGTGGGGTGGGCGTGGCATACAACACCAAAATTGGAGgtgtgcgTATGCTGGACGGGGAGGTGACAGACATGGTGGAGGCCCACTCCCTCAGCCTGAACTCACAGCACATCCACATCTACAGCGCCAGCTGGGGCCCAGAGGATGATGGGAAGACGGTAGACGGCCCCGCCAAGCTAGCCAAGGAGGCCTTTCTCCGAGGAGTCACTGAGGGCCGAGGCAGGCTGGGCTCCATCTTTGTGTGGGCATCGGGGAATGGTGGTCGTGAGAAGGACAGCTGTAACTGTGACGGCTACACCAACAGCATCTACACACTATCCATCAGCAGCACCACCCAGTACGGCATGGTACCCTGGTACAGCGAGGCCTGCTCCTCCACCCTCGCCACCACCTTCAGCTCTGGGAACCCCAACGAGAAACAGATAGTGACTACAGACCTGAGACAGAAGTGTACAGACTCCCACACGGGGACGTCAGCCTCAGCCCCCCTGGCTGCTGGGATCATCGCACTGGCTCTGGAAGCCAATATGAACCTGACGTGGAGGGACATGCAGCACCTGGTGGTGAGAACCTCTCACCCCGCCCACCTCAGCACGGACGACTGGAGTACCAATGGAGTGGGCCGCAGAGTGAGTCATTCGTATGGGTATGGTCTGCTGGATGCGGGGGCCATGGTGGCTCTGGCTCAGAACTGGACAAGTGTGGGCCCACAGCACCAGTGTGTTCTCACCATGCTCTCAGAGCCTAGGGACATAAGCAGCCGGCTGCTGTTCAGTAAGACATTGGACGCCTGCTGGGGCAAACCAGAGTATGTCAGCTCTCTGGAGCACGTCCAGGCCCGCCTCACTCTCTCCTACAACCACAGAGGAAACCTGGCTATACACCTCATCAGCCCCCTAGGGACACGCTCTACCCTGCTGGCACCCAGGCCTAAAGACTACTCATCAGAGGGATTTAATGACTGGGCCTTCATGACCACCCACTCGTGGGATGAGGACCCTCGAGGGGAGTGGACCCTGGAGATAGAGAACGTCTCAGAACAAGGGCACGACTATGgtGTGTTGAGTCAGTTTACTCTGATCCTGTACGGTACGGGCTCCAGCTCCATTAACCCCTTGTCTCCTGACTTCCCCCGGCCGTCCAACAACAGCTGCAAGACCTTCGACGCCCAGCAGATCTGcatagAGTGCAGCCCAGGCTTCTCCCTGTTCCTGCAGGGTTGTGTGAAGCTCTGCCCCCCCGGCTTCACCTCAGGCCCCCAGCTCCTCAACCTGTCCCTGGACAACTGGGTGGACTTGTCCTCCGTCCAGGCCTGCCTGCCCTGCCACCCTGCCTGCCTCACCTGCTCCGGCCCCGGGCCCAACGACTGCCTCTCCTGCCCCCCTCACAGTCACCTGGTCCTCACCGCCTGCCTGCACCAGAACCAAGTCCAGCGCAAGTCCCCAACCGGCCAAGTCCTccagggagaggggagtggaCCAAGGGAGAGTCCAGTGGGGTCAGagcaggggggagggggagagccTCCAGGGCCTAACCTGGGCCTGTCCTCCCCTCTGATTACCCTGCTTGCAGTGCTCAGCTGTGCCTTCATCTTGGCAGCCTTCGCCGGGGTCTTCCTCCTGCTGCAGCTGCGCTCTGGTGGCGCCCCCTGGGCCCGAAGGACCAAACTGCACTCtgtggagacagggagaggggccTCGGGAGGCATCCGTGTGGGCATTGGCTTCGGCCTGGGGCTGGGCTGGGAAAGGCAGGGCAGGGTGTCTTATAAGGGGATCCCCACTGTGTGGAGGGACGAGGACCAGGTAACACTGGGGGGCTCTGAATCGGACAGTGAGGAGCTAGACTGCCACAGTGAGAGGACAGCCTTTATCAGGACACAGAGCTCCCTCTAGCCCCCTCTCTGACCCCTACATCTGGGGGAAACTCTCTTCAGAGGGGTTGGTCTCTCCGGCCCCTCCCTCTGCTAGAGCTCATGGGTCTGTGGTTTGGGTCTGGCTCAGGCCTCGTCCCTTGCTGAGACTGATACACAGAGATGCTGATCCAGGGATGTGATGGCAGCCCAGCAAGCATTAATCAACAGAAAATGTTTTAATTCTATAAGTACCATATTTTATTGTATATTTTTTTCCTTTGCTTTTAAAGACTTTAATAAGATTATTCCCCTGGCCCAAGGGTCAAGGTAAAGGGAAACTACAGTTTCTGAATTGAGTTGGGGAGCCATAGTTTTCGCTAATGTTTCCCATTGACCTTATTTTTGTTGCGTTATAAACATTGGCCCTTAGCCTCTGTCCTAATATGAGCAGGCATGGGAAGAGATGTCTGTATGTATcagcatacgtgtgtgtgtatgtgtgactgtgACTTTGTACACAAGAGCTAAATAGCCGCCCAACACAGTTTCTGAGTGGATGAAGAACACAGCAGGGTTTATTTAAagtatgacagagagagaaagagaaagtttGGATTTGTAAATTAGATTCTCTCTGTGATAAACACCTTCTGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216402 lncRNA upstream 57479 80721510 ~ 80722580 (+) True G191024
TU216404 lncRNA upstream 71329 80708098 ~ 80708730 (+) True G191025
TU216408 lncRNA upstream 75732 80704097 ~ 80704327 (+) True G191028
TU216363 lncRNA upstream 131071 80648652 ~ 80648988 (+) True G190986
TU216354 lncRNA upstream 139972 80639797 ~ 80640087 (+) True G190977
TU216603 lncRNA downstream 11574 80988887 ~ 80991854 (+) True LOC110497237
TU216636 lncRNA downstream 54729 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA downstream 54729 81032042 ~ 81033476 (+) True LOC118942351
TU216836 lncRNA downstream 357765 81335078 ~ 81335608 (+) True G191402
TU216843 lncRNA downstream 365151 81342464 ~ 81342689 (+) True G191405
XM_021573150.2 mRNA upstream 52524 80724360 ~ 80727535 (+) True rag2
XM_021573124.2 mRNA upstream 731877 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA upstream 731877 79916922 ~ 80048182 (+) True LOC110497165
XM_021573109.2 mRNA upstream 1544150 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA upstream 1544150 79177030 ~ 79235909 (+) True LOC110497158
XM_021573270.2 mRNA downstream 13665 80990978 ~ 80994869 (+) False LOC110497237
XM_021573248.2 mRNA downstream 14871 80992184 ~ 80994869 (+) False LOC110497237
XM_021573261.2 mRNA downstream 14878 80992191 ~ 80994869 (+) False LOC110497237
XM_036956465.1 mRNA downstream 14879 80992192 ~ 80994869 (+) False LOC110497237
XM_036956466.1 mRNA downstream 14879 80992192 ~ 80994869 (+) False LOC110497237
TU216442 other upstream 13345 80765332 ~ 80766714 (+) False G191057
TU216443 other upstream 13345 80765732 ~ 80766714 (+) True G191057
TU216437 other upstream 23412 80755141 ~ 80756647 (+) True G191052
TU213267 other upstream 2199997 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 2273127 78484824 ~ 78506932 (+) True LOC110496993
TU216622 other downstream 88241 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 91307 81068620 ~ 81070875 (+) True LOC110497314
TU216654 other downstream 106515 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other downstream 106515 81083828 ~ 81086180 (+) True LOC110497320
TU218731 other downstream 1388972 82366285 ~ 82388521 (+) True LOC110497665

Expression Profile