RNA id: XM_021573248.2


Basic Information

Item Value
RNA id XM_021573248.2
length 1412
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC110497237
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80988887 ~ 80994869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcttcacatttatacatccggttgAAGTATCTGTCTCGTTGTTCTATCTGTAGCACTGATCGCAACGTTGTACGGATTGTTTTGTTTACGCTACCGCGAAACGCAGAGTTGCTGATGAATtggtttggatttggcttcaacGGCTTTGGGCAAATACGAACGAATGAAAAATTGACGGATGGGGAAAGTGCCGGAGATGCCAACGTGACATATCCAATCTCTATTGATATTGTTTGTCGGAATTTGGAAGAGGAGCCTGTCCAAATCTGTCAACATAATAGCAATGTTGATACGCAGATCAGGACAAGTTGGAGTCGAAGAGCAGCTCTGCATTCAAATAGTGATGGAAGGCTGTGTTTGGCAGGTTTTGGAGTAGGGACCCCCAGTCAGAAAGGATGTGGCGGCTGTGTAGAGGAAAGCCGAGGGTGCCAGGATGCACATATCAGCGAGGGATATCTGGCCCTGTCTTTCACAGACAGAGTAGAGTGCTGGAACTCTGAGCGAAATGAGAAGAAACCAGGGTGGAGTATGGTGATTCCAGATAATACTGGGCCCTCACTAGCATTCCCATTAGTTCCAGGAGGGTACATAGCTTCCAATCCTCCCTTTTACCGCCCACTTTCCCCACAACTACTGGCTGTTAGCCTGGCACTAGGCACAGAGCACGCAGTCCTCCTCACTGCATCTGGAGACATCTACACCTGGGGCTCAGGCAGCCATGGGCAGCTGGGACATGGGGACCTGAGCCCGCAGGAGGAGCCCAGAGCAATGGAGGCACTAATGGGTATGTCCATGAGCACTGTGGCCGCCGGGGGttggcactctgtctgcaccagTGCTGGGGGAGACCTGTACGTGTGGGGCTGGAATGAGAGTGGCCAGGTGGGACTGCCATCACGAGCCCTAAGAGGAGAGCAGCAGAAGAGCCAGGACACAGGTGGTGCCAGCACATgtaaagatgaagaggagagcTACGACGACGTGTTCATATCAATACAGGCCTTCCCAGCCCTGGTGGATGTTACTCAGTCATGCGAGGTCAGCAAGATCAGCTGTGGGTCGCGTCACACTGCGGCAGTCACAAGTACAGGTGATCTCTACACTTGGGGCTGGGGTGAATACGGCCAGCTGGGACAGGGGACTGAGAACAGTTCAGACGAGCCAAGAAGGGTAGAGTTTTTCAAGGACCAGGGGCTGCGTGTGGTGGATGTAGTGTGTGGACCATGGAACACTTTTGTTTCTGCTATCAAAGAggacccctctctccatcctgacACAAATATCATTAATCCTCTAACCAAGAACGACATAGAATGGAAAAACTGCCTGTAGGAGTTGAGCACTAAGGACAGTGCACAGATTGATTGACTAGCTGCTTGTTTCAGACAAATAAAGTAAAGTCAGTGACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216603 lncRNA upstream 330 80988887 ~ 80991854 (+) True LOC110497237
TU216557 lncRNA upstream 67462 80914300 ~ 80924722 (+) True G191167
TU216402 lncRNA upstream 269604 80721510 ~ 80722580 (+) True G191024
TU216404 lncRNA upstream 283454 80708098 ~ 80708730 (+) True G191025
TU216408 lncRNA upstream 287857 80704097 ~ 80704327 (+) True G191028
TU216636 lncRNA downstream 37173 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA downstream 37173 81032042 ~ 81033476 (+) True LOC118942351
TU216836 lncRNA downstream 340209 81335078 ~ 81335608 (+) True G191402
TU216843 lncRNA downstream 347595 81342464 ~ 81342689 (+) True G191405
TU216844 lncRNA downstream 348759 81343628 ~ 81343850 (+) True G191406
XM_021573226.2 mRNA upstream 14871 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA upstream 14871 80780059 ~ 80977313 (+) True furinb
XM_021573150.2 mRNA upstream 264649 80724360 ~ 80727535 (+) True rag2
XM_021573124.2 mRNA upstream 944002 79916922 ~ 80048182 (+) False LOC110497165
LOC110502143 mRNA downstream 34472 81029341 ~ 81031876 (+) True LOC110502143
XR_005038304.1 mRNA downstream 37130 81031999 ~ 81033251 (+) False LOC118942351
XR_005038310.1 mRNA downstream 37130 81031999 ~ 81033251 (+) False LOC118942351
XR_005038316.1 mRNA downstream 37130 81031999 ~ 81033251 (+) False LOC118942351
XM_021573350.2 mRNA downstream 54637 81049506 ~ 81055428 (+) True LOC110497304
TU216442 other upstream 225470 80765332 ~ 80766714 (+) False G191057
TU216443 other upstream 225470 80765732 ~ 80766714 (+) True G191057
TU216437 other upstream 235537 80755141 ~ 80756647 (+) True G191052
TU213267 other upstream 2412122 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 2485252 78484824 ~ 78506932 (+) True LOC110496993
TU216622 other downstream 70685 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 73751 81068620 ~ 81070875 (+) True LOC110497314
TU216654 other downstream 88959 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other downstream 88959 81083828 ~ 81086180 (+) True LOC110497320
TU218731 other downstream 1371416 82366285 ~ 82388521 (+) True LOC110497665

Expression Profile