RNA id: TU216603


Basic Information

Item Value
RNA id TU216603
length 2559
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110497237
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80988887 ~ 80994869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTGCTGGACGCTGCGCAGGTTGAGCATGTAGAAGTCACAGGGCTCGCTGTTGCCATGGCAACTTTACCTCGAGCTCCACCTCTCAGGGCGAAGGAGACAAGAGAGTGAAACATGGAGAGTTTGGCAAAGAAGCCATCATGCTGAGTGCAATGGAGAAGGAGACCGAGAGAGATGACAAAAATAAATGGAGGGGAGTGACAAATAAAGAACGGAGACATGGGTTAAAGAGCGCAGCATGAGAGACCTacagtactcattcaagggtttttctttgttttttactgttttctacattgtagaataatagtgaagacatcaaaactatatttgagattcttcaaagtagccaccctttgccttgatgacagctttgcacacacttggcattctctcaaacagcttcacctggaatgcttttccaatagtcttgaaggagtcccacatatgctgagcacttgtgggctgcttttccttcactatgtggcccaattcatcccaaaccatctcaattgggttgaggttcggtgattgtggaggccaggtcatctgacgcagcactccatcttggtcaaatagcccttacacagcctggaggtgggttGGATCATTgtactactttgaagaatctaaaatctaaaataaatattgatttgtttaacacttttttggttactacatgatgtcatgtgtgttatttcagttttgatgtcttcactcttattatacaatgtagaaaatagtacaaataaagaaaaacccttgaatgagtatgtgtgtccaaacttttgactggtactgtatctatttttttatttgcatgtttagctcacatcatttaaaagtatgcattaaggtgtctttaATATAATAAATGTGTCAAAaacgaatgtagacattaatacatgcatttatatagcttccaaaattaatatatattttttttacaattgagGAGTACCAAGTTGGCGGTAGCTTCAATACCACGCAGTCATCAGTCAGTCATCCAATGTTTATACTTATTATTGGTTGACACATCTTGCTTTGAAATTAATTTCCATCactggaggttggtggcaccttatttGGGGAGGATGGGCCCGTAGTAATGGCAGGAACataataagtggaatggtatcaaagaggtttccatgtgtttgatgtaattCCATTCACTCAGTTCcctccccttagcagcctcctgtgatttcCATAATCCAGAAATTGCACATAAATATTTAAGGCTAGATGCAGTCTTTGGTGATGAAATTATTTAGATACAATGGATCAGCTTTTAATGAAATCACTCAGATGTATTAACATTGCAAGTTTTTCTGTCAGACAGCCTTCTAAACTCTTGGTGTTTTTGGTTTACAAACAATAACTGAGACATTGGAAATCTAGTGGAAATAGGAAAGGGAAGAAAAAATTATCCATATTATCAGAAGGTTCAAGTCAATCATTTCTGTTTCTCTGTGCATTATAGAACAACATAAATAATATGTTGGAAACATTAAACACTTGTAGAAATTGTCAGGGAATGCAAAGGAAATGCATGACGGGAAAAATGTCAGCAAGATAAAGgaatagcatcagcaatccagtgTTAATATATGTAATTAGTTTCAACTCGTCGGACAACTGCACAGCATGCATTCAATACGCTGATCTGACCTCCCACAATCGAACGGATCAAATTCTCTCACACCCATCTCCAACATCGTATGGAGCTGGAGGCAAGAGAGGAAAATGACCAGGAAGATGCTCTACAAATGTCGGCGCGTTTCCGAGGTGAGCAGGACGACTATGGGGTTACGTCCGGATGCCACCAGGCTGCAAGCAAAGTCGTGAGAATAGGAATATTGGGCCAGGGACACAAACATGTGGATTTCTGAGGAATGGAGGGAACAAATAGAAAGAAGAGGTCGAAGAGAATGAGGAAAACAGAGGTTTGGATTTGAATTTGAGGAAGATGGGGTGTTGAATAAGACTGGTGTCAAGTGCAAACAGAGTGGGCTGTGCGCCAGCCCAAATTCTGGAGgtgaaatggaagtgaatgagggcgAGTTAAGTGAGGTGGAAATTGTCTTGAAGAACTCGAAACATGAGCCTGGCATCAATGGACATGATAAAGAAGAATCTGGTCCAGTAGGAGTGACATTTTTGTAGAAAGGGGATCCTTACTTTTTAGCGGATCCATTATTGGTTTCTGGGTGGATGAGAAAGGAGGTGGGTGCATTTGaatcagtgaaggtaacctgtCGTGAACTTGTGATAtttgtttgtatttattatgacCAGAGGGAGTGGACGCTCTATGTCACACTACTTGGGTTAAGATCTGTACCATTGAAAGGAATAATTTAGAGTTAAGTGTGAAGTTAAAGATTCCTGGTGTTTGGTTTGTGATGCCTGCTGTTTGGTGCAACCCAGACCGGTGGGGAGCGCTGTGAAACAGTCACTGTAATCTAccctgccgcacgagcatgcttttgcggcacagtcgatagtgcgccggacctcgggctagaagtttgagggttcgagacctgctccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216557 lncRNA upstream 64165 80914300 ~ 80924722 (+) True G191167
TU216402 lncRNA upstream 266307 80721510 ~ 80722580 (+) True G191024
TU216404 lncRNA upstream 280157 80708098 ~ 80708730 (+) True G191025
TU216408 lncRNA upstream 284560 80704097 ~ 80704327 (+) True G191028
TU216363 lncRNA upstream 339899 80648652 ~ 80648988 (+) True G190986
TU216636 lncRNA downstream 40188 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA downstream 40188 81032042 ~ 81033476 (+) True LOC118942351
TU216836 lncRNA downstream 343224 81335078 ~ 81335608 (+) True G191402
TU216843 lncRNA downstream 350610 81342464 ~ 81342689 (+) True G191405
TU216844 lncRNA downstream 351774 81343628 ~ 81343850 (+) True G191406
XM_021573226.2 mRNA upstream 11574 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA upstream 11574 80780059 ~ 80977313 (+) True furinb
XM_021573150.2 mRNA upstream 261352 80724360 ~ 80727535 (+) True rag2
XM_021573124.2 mRNA upstream 940705 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA upstream 940705 79916922 ~ 80048182 (+) True LOC110497165
XM_021573248.2 mRNA downstream 330 80992184 ~ 80994869 (+) False LOC110497237
XM_021573261.2 mRNA downstream 337 80992191 ~ 80994869 (+) False LOC110497237
XM_036956465.1 mRNA downstream 338 80992192 ~ 80994869 (+) False LOC110497237
XM_036956466.1 mRNA downstream 338 80992192 ~ 80994869 (+) False LOC110497237
LOC110502143 mRNA downstream 37487 81029341 ~ 81031876 (+) True LOC110502143
TU216442 other upstream 222173 80765332 ~ 80766714 (+) False G191057
TU216443 other upstream 222173 80765732 ~ 80766714 (+) True G191057
TU216437 other upstream 232240 80755141 ~ 80756647 (+) True G191052
TU213267 other upstream 2408825 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 2481955 78484824 ~ 78506932 (+) True LOC110496993
TU216622 other downstream 73700 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 76766 81068620 ~ 81070875 (+) True LOC110497314
TU216654 other downstream 91974 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other downstream 91974 81083828 ~ 81086180 (+) True LOC110497320
TU218731 other downstream 1374431 82366285 ~ 82388521 (+) True LOC110497665

Expression Profile