RNA id: LOC110497262


Basic Information

Item Value
RNA id LOC110497262
length 2841
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC110497262
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80995022 ~ 80999005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAACCCCATGCtactctgtatttttccatcacgagaaaggcccatggccctgtaactgttaacaatgtttcaagtcagctatgttgcataacacatacatacatccacacaagccaacagcagataatattaaatCATATATATGGTAATGGATATAATGTAAAACAGGATCCAACATTACATAAATAATCatgtcaataaacgttgggtagttagttaatatactgcctggcaagtttgatgtattagtagccaactaacgttaggtaacTAGCTAACATATGGTATATATTGCTGTAATGCTATGCAGTTTGTAAGGATAGCGTAGCAAACAAATTGTCAGTCAACGTAATTTATTTGAAAAGGCATTACTTTATTACACTTTTCAAAAtgttcttaacatttgtcataattagttaaagcaattcATTTGTATCTACTCTCGCCTgacttcggctgcatattttctgccattttcttcaaatctgaaaagttATGAAGCCACACCCATTTCCTGAAGAATGgcattagcttgggtgcttgactgcgattgtaaggtcagaacgctcaaatcaaccATACtcctagcaagaggttgcatagcaacatcATCAACTTCCAGTAGACAGATGAAGAGCTAGTaagctcaactgaaaggatactgtaatgacctgactagatcataaaggaacaattgtccagacagaggtttgagtttacgaattgacggtttattaaaccaactttacacaggctactgtttggccgtagcccacgccaaataaatgaaagataacCCACAAGCCAATCatgaccttctcttgtgaagagagagaaaaaaggctaaacctggtcttaacttccaatgctccatccccctgcccaacccccctccacgccactccgccaaccgCCAGGATGAccggcatcagaacattccaggcattcctgtgattggcagatagcaggttgattggcatgtcccgcgaacactgggtactggtaagtacaacacaaccacctactagcctaacacataacacacagctgtctgtgcgggtcgctacagATACCATTCGTTTACATTATACTAAAAttaactaatagtatatagtatgctcattaagtatgtagtatacagtatgttagtatgggtattcgaacacaacTTTCGTATTTTGGCGAATTTCGTACgtcatccgggaacttttggcatactaactatatccatactatgaccaataagcatactatatactcaattcacgTCACAAATAGTAAGGTTattatgagtattcgaacacaacTCAGGTCTGGGTTCCATTGACTCAGGCAGCCGCAGAATAGCAGGTGGCACTTCTACTTAATAATATTACGTAAATTCCGGAAAGGGAAGTGGCTCCTTTGGAAAGTTATCGAAGCAGAAAGTTCTCAGAAGTTATCTAGCTTAACAAACAGAAGAAGGGAAACATGGGGACAACAGCAAGTCAATTAGGGAAGGATCTGCTCTCAGAATATCAGGAGCTGACATTTCTTACAAAACAAGAAATTCTGTTGGCACACAAGCGATTCTGTGAACTCCTCTCCAAAGAGGACAGAAACCTCACCAGTGTGCCCATGGAGAAAGTCCTTTCACTGCCAGAACTCAAGTCCAACCCTTTCAGGAAAAGGATCTGTCTGCCATGTATTCTCAACATCTGATATGAAAGATGGAAGTCTCACCTTTGAGGACTTTCTTGATCTCTTGAGTGCCTTCAGCGATTCAGCTACACTGGAAATCAAGTCCCACTATGCATTCCGCATTTTTGACTTTGATGACGATGGCACTCTGGATGGTGGGGACCTGGAGAAGCTGGTGAACTGTTTGACTGGTGAGACTGAAGACACAAGGCTTACACCTGAAGAGATGAGGCAGCTCATCAGCAATATTCTTGAAGAGTCAGATATAGACAAAGATGGGACAGTAAATCTGTCAGAGTTCCAACATGTTATCTCCAGGTCACCAGATTTCGTCAGTTCTTTTGAGATTGTGCTGTGAAGTCTACGAATAACACACCAGGATATGGATGCTTTGGATTCTGTTCTATTCATACTAAGAGGACCTCTTCTATTTTTTTCATTGTAATACCAATAACTTTGAGATTTTGCCTTAAATTATACGGAGTGAGATTTTTTTGATTCTGAgaatcttcatcagctaacatCACTTTCTTGAATTTTGAAGAATTCAtataatcaacaacaaaaaaagcataGCACAAAGGcttaattcataaaggtcatgttaactgactggtATTATCCGATATAACAAAACATAAGATCTCCtcagcctgtgttaacctcagaccttattttctgcatttattccaaaaccctattctttccccattAATTTTTCACATAGGGATGGCTGAACAAACCAAAGGTAACTAATTCTGGGTTTTAGGACTACACGCTGGCGAGCTCTGATAATTCAAGTTTTTACCGGTTAAACATCCATGCAGCATCTGCATACCAACCATTTGATCTCATCAGCTTCATGGGATATGCATTTAGATCTTCGTGTTATTGTTGTTTTGAATTATGGGCTAGTGAGCAAATTTTAGAGCAGATGTTAAACTGTAGCATAGTTTAGGCTGTGTTTTTGCCAAGTGGCCACATGGATTATTTTGTTGTCTGACAGTAATGTCATACTATTATATTCGGTTCTGTTTTGTAGAATACCATCATTGTGATCTTGCAGACATTGAATCAGCTTTGATCAAACTTTATTAAACAAGCTCCATTAGCCAGAGTAGCCTGTTCTGAGTAGTACAGAGTGTGCGTAAAGTAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217119 lncRNA downstream 74146 80915679 ~ 80920876 (-) False G191669
TU217120 lncRNA downstream 74146 80915679 ~ 80920876 (-) True G191669
TU217116 lncRNA downstream 75094 80914658 ~ 80919928 (-) False G191668
TU217117 lncRNA downstream 75094 80914658 ~ 80919928 (-) True G191668
TU217027 lncRNA downstream 169276 80805156 ~ 80825746 (-) True G191582
TU217191 lncRNA upstream 50536 81049541 ~ 81052986 (-) True G191727
TU217246 lncRNA upstream 84556 81083561 ~ 81086179 (-) False G191777
TU217247 lncRNA upstream 85152 81084157 ~ 81085026 (-) True G191777
TU217309 lncRNA upstream 143419 81142424 ~ 81185888 (-) False G191832
TU217303 lncRNA upstream 179117 81178122 ~ 81185700 (-) False G191832
XM_021573203.2 mRNA downstream 218664 80766303 ~ 80776358 (-) False accs
XM_021573219.2 mRNA downstream 218664 80766303 ~ 80776358 (-) True accs
XM_021573211.2 mRNA downstream 218860 80765955 ~ 80776162 (-) False accs
XM_036956462.1 mRNA downstream 221028 80766303 ~ 80773994 (-) False accs
XM_036956463.1 mRNA downstream 221045 80766303 ~ 80773977 (-) False accs
XM_021573315.2 mRNA upstream 9695 81008700 ~ 81010914 (-) True LOC110497280
XM_021573329.2 mRNA upstream 25618 81024623 ~ 81027430 (-) True LOC110497288
XM_021573342.2 mRNA upstream 34999 81034004 ~ 81037186 (-) True tmem17
XM_021573503.2 mRNA upstream 193559 81192564 ~ 81194099 (-) False cart2
XR_005038428.1 mRNA upstream 240025 81239030 ~ 81240770 (-) False LOC118942622
TU217118 other downstream 73607 80915679 ~ 80921415 (-) False G191669
TU216232 other downstream 442538 80552127 ~ 80552484 (-) True G190857
TU215157 other downstream 1234395 79760039 ~ 79760627 (-) True G189806
TU214582 other downstream 1628453 79365849 ~ 79366569 (-) True G189256
TU214411 other downstream 1770024 79223230 ~ 79224998 (-) True G189093
TU217319 other upstream 193523 81192528 ~ 81193845 (-) True cart2
TU219436 other upstream 1902635 82901640 ~ 82912504 (-) True G193745
TU219446 other upstream 2006825 83005830 ~ 83007976 (-) True G193755
TU219891 other upstream 2221017 83220022 ~ 83223144 (-) True LOC110502187
TU220290 other upstream 2616561 83615566 ~ 83616034 (-) True G194491

Expression Profile