RNA id: LOC110502143


Basic Information

Item Value
RNA id LOC110502143
length 2304
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110502143
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81029341 ~ 81031876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGAAGGGGAACGTGGTCTACTTCATTGACTCAGCCACAAAAACCTCCTACTTCACCTGCTCTCACGTGGGGGGGAGCTGGGGGCTCATCAAGAGCTCCACCTCCTGTGCCACGCATCAGGACCAGTCCTTTGAGTCATGCTTCGAGAGTGGCAACCTGCAGAAGGCAGTTCAAGTtctaccccccctctcccacTTACACAGTGGTGTCCATAACTACAAGCTCACCCTGCACACTGATATGTACACCACCAAGCACACGCAGTGGAGAGTACTTCCGGGTCAGAAACATGAAGGCTAGCAGTCTGTACTGCACAGGCATGAGGTCCATGCTCTACTCTGAGATAGCCGCCTGGGAGAAGGGACGGCTGGCACCGGACTGCCTCAAGCATCAGGTACTACCACAACCAGCATCATAAGGCTGAGCaggacaacaacaccaccacGAACATCAAATCCCTCACCTGGACCTGCCAGTTCCCCTATGACAGACACCTATCTGGCCCACTGCTAACCTTAACACCTACTCCCACCTGCAGTGCTACCTCAGCCGCCTCAACTCCAATTCGGCCACCGCCGGCTACTGCAAGCTGCGGGTGCATTGCCGCAGCCTGGCCGGCAACGTTGTACATGTGCTGACAGTGACGCCGCCGGGAGGAGGGTGGGCGGAGAGGATTGCCAAGCAGGTGGTGGTTGTGACGGCCGGGGTGCAACCCGGGGAGAACAACAGCTCCTGGTTGATGCAGGGATTCTTGGACTTCCTGCTGGGAGTCGGACGACACCAGGCAGCTGAGGGAGATCTTTGTGTTTAAAGTCGCTTATGCACTTTTGACTTTTTTATCTTTGAAAATAACCAAGTATTTCAGTTATGTGTTTGATTGCCATGTGGGATAAATGTACGTTTTCCATTCAGAATTAGAAACACATCATAAAGAGACCCCATGATGTTGATTGTTGTGTGGCTCCCTTGCGGACCTGCAGGTGATGCCTATGCTGAACCCAGACGGGGTGGTGAACTACTACTGATCTCTGGCCGGCAGGGACCTGAACAGGAACTACAAGACtctgctgagggattccttcCCCTGCGTCTAGCACACCAGGAACATGGTCAATAGGCGAGAGGGGGGAAGTGGGAGGATACTCAAACAGATGTGAGAGAGTCATGCCTCTCTAACCTACGTAGAGGTTTAAGTTCAGTCTGCCTTCTCTGACCTTGTTGCTATGGTTTCCCATCTGTCCTCGTTGTTGTCATTGCACCCAAAACTGATGGCTGAGAGAGATGTGGTGCTGTATTGATTTTCAGTCACAGTCATAAGAACAATGTCTTCATGTGCGGCTGTACCAACCGCGATGATGCCACACAATGGCTCCATGAGAGAATCTTCCCTCCCATGATGAGCAAGAACGTCAATGACAAGGTTCGAATCCCATTGAGTTAAAGAAAATCTTGGCCAACGGTagctgtggtcagagagaagagagagagaaggtatggATGAGAGAGAAGTTCACTCTTCCTCATTTGTTTAGACTGATTGTGGCTTGTGCATTACCCCAGAACCTAATTTCTAAAGACAGTACACTCCTGGATCCCCCATCCCACCACTCGCATTGGTGTCATAGGCCATGTGACCCTCTGGCAGGAGGAGGAGTCAGAAGGTAATGGCTGTCAATTACCCTTCAAGCCCTACTGCATCTTGATAGTTTGCAGTGTTACTAAAATACTGTTACAGGTACATTCATCTCAAGGTGTTTTACAACAACCTGGGCCTTGACCTCCCAAACCTGTTCTTAGTAGGCTGATGCACTCTGAACATCCCCACCTCATCAAACTTAAAAGGCATGAATAAGTGATGACCACTGTTTTGTGCCAGTGTGATGGTCAGCATTAACTGTGTTCCAGAATGAATACCTGGAGGCTGAGGGCTGCATACCTGTTGAGTGGGGCTCGTGCTCACCCTACTCAGCCACCTATCACAGGTGTGGAGGATAGAACCTTATCATTAGGAATGGATTTTGTTTTATGACTtcaccaattttttttttaaccaaatttGAGTTTTTCTGCTGAATGTGGCTCTGATGTTTGTCTTCCTCAGAGGAGCAGCGGCAGTATCAGTCACCAGCTGCAGTTTGGCTCCTCCCAGCCTCCACGGTCGGCCCCTCAGCAGTTGCCCCTATCTGTCACGGCCATAGAGCAATGCGGCCTCTCCATGCCTGTTATGCAGCAGCAGCCCATGCCCTTCAGCCCCGATCACAAAACCAACACTGAGATGAGAGGTTGGGTTTGAGCCagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216603 lncRNA upstream 37487 80988887 ~ 80991854 (+) True LOC110497237
TU216557 lncRNA upstream 104619 80914300 ~ 80924722 (+) True G191167
TU216402 lncRNA upstream 306761 80721510 ~ 80722580 (+) True G191024
TU216404 lncRNA upstream 320611 80708098 ~ 80708730 (+) True G191025
TU216408 lncRNA upstream 325014 80704097 ~ 80704327 (+) True G191028
TU216636 lncRNA downstream 166 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA downstream 166 81032042 ~ 81033476 (+) True LOC118942351
TU216836 lncRNA downstream 303202 81335078 ~ 81335608 (+) True G191402
TU216843 lncRNA downstream 310588 81342464 ~ 81342689 (+) True G191405
TU216844 lncRNA downstream 311752 81343628 ~ 81343850 (+) True G191406
XM_021573270.2 mRNA upstream 34472 80990978 ~ 80994869 (+) False LOC110497237
XM_021573248.2 mRNA upstream 34472 80992184 ~ 80994869 (+) False LOC110497237
XM_021573261.2 mRNA upstream 34472 80992191 ~ 80994869 (+) False LOC110497237
XM_036956465.1 mRNA upstream 34472 80992192 ~ 80994869 (+) False LOC110497237
XM_036956466.1 mRNA upstream 34472 80992192 ~ 80994869 (+) False LOC110497237
XR_005038304.1 mRNA downstream 123 81031999 ~ 81033251 (+) False LOC118942351
XR_005038310.1 mRNA downstream 123 81031999 ~ 81033251 (+) False LOC118942351
XR_005038316.1 mRNA downstream 123 81031999 ~ 81033251 (+) False LOC118942351
XM_021573350.2 mRNA downstream 17630 81049506 ~ 81055428 (+) True LOC110497304
XM_036956468.1 mRNA downstream 26308 81058184 ~ 81079423 (+) False LOC110497314
TU216442 other upstream 262627 80765332 ~ 80766714 (+) False G191057
TU216443 other upstream 262627 80765732 ~ 80766714 (+) True G191057
TU216437 other upstream 272694 80755141 ~ 80756647 (+) True G191052
TU213267 other upstream 2449279 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 2522409 78484824 ~ 78506932 (+) True LOC110496993
TU216622 other downstream 33678 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 36744 81068620 ~ 81070875 (+) True LOC110497314
TU216654 other downstream 51952 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other downstream 51952 81083828 ~ 81086180 (+) True LOC110497320
TU218731 other downstream 1334409 82366285 ~ 82388521 (+) True LOC110497665

Expression Profile