RNA id: TU216636



Basic Information


Item Value
RNA id TU216636
length 1073
lncRNA type sense_over
GC content 0.44
exon number 3
gene id LOC118942351
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81031999 ~ 81033476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTATGAACTAGTATGAAAGTAGTATGACACAGAAATGCAATCAGGAGTAAAGTCGGGGGCTTTCTTTTCCACCCCAGTTTAACAGATGGTAAATCAAGCGTCCTGCCGCTATTCCAACTTCTTCTCAGCCAAGTCCCACCACCATCGGCCGCACCCAGAGACAAGGCCACGCAGCCCGGGTCTCCATACGCTACTACTGTACATGCCAGAGGAGGTCCGAGGGAGGAGCCCAGAAAGAGAATACACAACAGGTGTATCTGTATCAAGCTCAGCACCTGTGAGTGAGCAGGACCAGAGAGGACCTCCAGCAGCCTTTGAGAACCCACTGAGTTAACCTGGGAGAGATGGCAACTCATTCATGCCAGACCTGAGcCATGACTGTCCATGGGGGGACCAGACAGCGGCTTAGATTAGAGGCAGGGCCCCTCAGAGAGAGCCGCTGGGGGGGAAGGGGAGCAGGCAGGCGTGTGTCTGGTGGagatgcagcagcagcagcgagtctgaacaacaaccacagACCTTGAAGAGGAAATCGGCGTTTTACCACAGATGTCCTCAACCCCCAAAGTGAGAGTCTACGTAGGCTCCAGAAACTCAGCCTGGCCAAGACCTCCAGGTTCCACTCCAATGGGAGAGGGGCCGAAGCAGATCTGGAGGAGAGGATGGTCGCCAGACTGTCAGGGTCTGCCCTCCTCGCAATAAAACACCTTTTGAGCTAAGAACCAGGCAGGGAAACACATTGGCAAATATGACAGACTGCTGACATTAACCCTTGAAGATGGATGGAGACTAGAGGGAGATTCTGCAACTATTTTGACCATGGGACAATAAAGGTCTTTTCACACTGCATTGTTCTTAGCCCCAGGCTAGCTTGGCCCCAGGCTTGACTGGCCCTGAGATAGCTTAGCCTGTGTTTCAGCATTTGTTAGCCCTGGGCTAAGGATTCACACTTTTATTCCAAAGCCCTGGTTAACGGACAAACACGCGACCAGCATTATAAGCAATTAACACGCAACCAAAGTTATAAGCAATTAAACATCTATTAACAGCACTTCCTTTTGCTTCTACTTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU216603 lncRNA upstream 40188 80988887 ~ 80991854 (+) True LOC110497237
TU216557 lncRNA upstream 107320 80914300 ~ 80924722 (+) True G191167
TU216402 lncRNA upstream 309462 80721510 ~ 80722580 (+) True G191024
TU216404 lncRNA upstream 323312 80708098 ~ 80708730 (+) True G191025
TU216408 lncRNA upstream 327715 80704097 ~ 80704327 (+) True G191028
TU216836 lncRNA downstream 301602 81335078 ~ 81335608 (+) True G191402
TU216843 lncRNA downstream 308988 81342464 ~ 81342689 (+) True G191405
TU216844 lncRNA downstream 310152 81343628 ~ 81343850 (+) True G191406
TU217572 lncRNA downstream 503649 81537125 ~ 81537623 (+) True G192071
TU217583 lncRNA downstream 524245 81557721 ~ 81558024 (+) True G192082
LOC110502143 mRNA upstream 166 81029341 ~ 81031876 (+) True LOC110502143
XM_021573270.2 mRNA upstream 37173 80990978 ~ 80994869 (+) False LOC110497237
XM_021573248.2 mRNA upstream 37173 80992184 ~ 80994869 (+) False LOC110497237
XM_021573261.2 mRNA upstream 37173 80992191 ~ 80994869 (+) False LOC110497237
XM_036956465.1 mRNA upstream 37173 80992192 ~ 80994869 (+) False LOC110497237
XM_021573350.2 mRNA downstream 16030 81049506 ~ 81055428 (+) True LOC110497304
XM_036956468.1 mRNA downstream 24708 81058184 ~ 81079423 (+) False LOC110497314
XM_036956467.1 mRNA downstream 24708 81058184 ~ 81080502 (+) False LOC110497314
XM_021573376.2 mRNA downstream 50280 81083756 ~ 81086188 (+) False LOC110497320
XR_002469663.2 mRNA downstream 50280 81083756 ~ 81086188 (+) False LOC110497320
TU216442 other upstream 265328 80765332 ~ 80766714 (+) False G191057
TU216443 other upstream 265328 80765732 ~ 80766714 (+) True G191057
TU216437 other upstream 275395 80755141 ~ 80756647 (+) True G191052
TU213267 other upstream 2451980 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 2525110 78484824 ~ 78506932 (+) True LOC110496993
TU216622 other downstream 32078 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 35144 81068620 ~ 81070875 (+) True LOC110497314
TU216654 other downstream 50352 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other downstream 50352 81083828 ~ 81086180 (+) True LOC110497320
TU218731 other downstream 1332809 82366285 ~ 82388521 (+) True LOC110497665

Expression Profile