RNA id: XM_036956468.1


Basic Information

Item Value
RNA id XM_036956468.1
length 5590
RNA type mRNA
GC content 0.56
exon number 35
gene id LOC110497314
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81058184 ~ 81080502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGATTACAAAGTCACTCTACCTGGGTTGCCCAGCAACGAGTCAACTACAAATGAAGATGGACTCTTCTGAGAAACAACCAGCTGAAGACAATTTTCAAGGTGACCCCACAGGAAAGCAGAAAGCTTCTGGGGAAACGGAAAGCTCAAATGTTCAGCCACCTCCAGAGAACAACACAACTTCCCAATCAGCAGCTCCTGCAGCCTCTGAGCAGGTGCAGCAGCAGCCAGGTGGGAGTAGTGATgctgtggaggaagaggaggagcgaaTGGGGATGAAGAAACTCTCTGAGGACATGTACTACAACTATGACGAGCTGTACTCCAGACCAGTCATCACTGCAGACTCGGAGATCCCAGAGAACCTGCTGCACCTTACGCACTCTTTTGGGTATGACTGTGGGCGCAGGGCTAACCTGCAGCTGCTGGATGAGCGAACGCTGGCCTTTGTGGCTGGAAACCAGCTCATATTCCTGGATGTTCGGACCAAGGAGCAACGCTACCTCCGCTCCTGCAGTGGGGGAGGCATCGGCACCatcatgGCCCACCCCAGTAATAGGTATTTTGCTGTGGCAGAGAAGGGAGACCAGCCCAACATCGTCATCTATGAGTATCCCTCACTACGACCCTACCGCATTCTCAGAGGTGGGACAGGGCAGGCTTACAGCTTTGTGGACTTTAACCATGAGGGCACCCTGCTGGCCAGTGTGGGTAGTGCTCCGGACTACATGCTGACCCTGTGGGAATGGAGACATGAACAGGTGATGCTGCGCTGCAAGGCCTTCTCACAGGACGTCTACAGGGTCACCTTTTCACCTGACAATCCTGGGCAACTCACCACCTCCGGATCTGGACACATCAAGTTTTGGAAAATGGCCAGCACTTTTACTGGTCTCAAACTGCAAGGGCTTCTGGGAAGGTTTGGGAAGACTGCCCTGACGGATATCGAGGGTTATGTGGAGCTGCCTGATGGGAAGGTAGTGTCGGGGTCTGAGTGGGGAAACATGCTGCTGTGGGACGGGGGCCTGATCAAGGTAGAGATATGCCGTAAGGGGGGCAGGACGTGCCACGCTGGCACCATCCAGCAGTTTGCTTTGGACGAGGGGGAGCTCATGACCATCGGCTCCGATGGAGCCATTAGGGGCTGGGACTTTGAGAGCATTGACACAGCAGACTGTAACGATGACAGCGGTCTGTTTGAGATTGAGCCCATGAACGAGATGGTGATTGGACGCAACGTCAGCCTGTCCTCCATGGTCAAAAGCTGCCTGCCAGACTCCTTCATCTGGTTTGCCCAGGATTCCAATGGAGGCATCTGGAAACTGGATCTTTCATTTTCCAACATTACCCAGGACCCAGAGTGTCTGTTCTCCTTCCATGCTGGAGTGATCCAGGGAATGGATGTGTCCAGCACTAGCCATCTGATGGCCACCACCACTTTAGACCgCTCAGTGAGGATTTTTGACTTCCTTGCAAAGAAAGAACTAACAACCAGCCGCTACAAACAAGGTGGAACAACACTGACCTGGGCGCCACGCCTGgtgaaccCTAGTGGAGGGCTGGTGGTGGTGGGCTTTGAGGACGGGGTGGTCCGTCTGCTGGAGCTCTACAACCCCCAGAGTTTACGAGTGGTTGCCGGGCGCAGTCGCTATGGAGATGCCGAGCTCCGTCTCAAACAGGCCTTCAAACCCCACAATGCAGCTGTGACAGCCATTGCATATGAACGTAACGGCGAGATCCTAGCTACTGGGagtATGGACTGCACTGTGTTCTTCTTCACTGTGGGGGACAGGTATGACCCCATTGGGTTTGTCACAGTACCAGGACCTGTACAGGGGCTGGAGTGGTCCCCCCAGTCACATggcaaAAACACCCTGCTGGTCCTGTGTAGGAGTGGTCATGTAGTGGAGGTCCAGTCTCCAGACCCAGAGGCCCAGAACCACGGCACCACCTACCACATCTCTGGCCTCCCCACAAGAAACTTCACCTTCAGCAGCATCAAGTCACACATCAAGCGGGAGGAGGAGATTGCGCGCAGGCAGGCTCTGAAGGAGAAgaagcagaaggagagagaagcaCAGCTGAAGAAAGCCAAGGAGGAGGGCCTTGAGCCCACTGAGGAGGAGCTgcaggaggtagaggaggaggaagagctgCCCCCTCTTTACACCCCTgacccccccagccctctctgcTGTGGCTTCTACTCTCTTCCTGGGGCCTTCTGGCTCTCCatgGGAGGCTATGATTCGGGGTTCCTGTACCACTGTAAGTTTTCCGAGCAGCAGGGTGAGGACCTGTTACAGCGCAGGGATGAGCCGTTCACCTTCCTGCCTGTCCAGAATACAGACGAGGACCCCATCTGCACCATCACCTTCAGctcaaGCAGGCAGCTGTTGCTATGTGGCATGCAGTCAGGCAGTGTCCGAGCCTACCCTCTGCAGCCACCTGACTTCCACCTCACATCCATGCAGGCCTTCTGGGCCCTCAGCGTCCATGACAACCAGTATGGACAGCTGCGCCAGCTGCGCTGTAGCTTTGACGACCAATTTGTCCTGACGACAGGGGAGGACGGCAACATCTTCTCCTTCAGCCTACTGCCCCAGGAGGACCTGCTTAAAGCCCTGCAGTGCAGCAAGGCCAAAGTCCCCTCACCACGGGTCGGCGTTGAAATGGAGGGTGTGGCCCAGGATATTGAAGACCCGTCGGCATACAGCATTGAGACGGCTAAGCAGAAGTTGGAAATGGACCGTATGCGTCGGGAGGCTGAGATGAGGAAGGTGGAGAGACGTAAGATGCTGGCCGAGCTGCAGAACCAGTTCAAACAGCTACTGGAGAAGAACCAGGGTCTGCCCGAACACGTCCGCTTGCACCGCACGgagTTGGAGCTGGACTGGCGGTTCCGTGAGGAGACTGAGAGGATGACGGCCCAGAGGGTGAgagaggccaggaaggagctggccTGGGAGGAGGAACGCCACCGCATCGGACTCCAGaaactacaggagagGTTCTGGGATTCTCTTGAGTCGGACACAGTTACTGTGGTAGCGTTCCAGAGTGACCACAGGATCTCCACCTATCGTCTGCTGGCACTGTCCCAGAGGTTCCACGAGCTGAAACAGAGGGGAAGGGTGGGGGGCCCGGGGACAGTGGGGCAGGAACGTTGGAGGAACAAAGCAGAGGCCGGCAAAGACAGTTCCAACATCACAGCGGACCAGGAGGACCTGGGTGAGGAGGCTGTTATGGCGCCCCATGTGGTGCGTCCAGGGGGCAGCAAGCTGGCTGGCCGCCAGGCAGAGAAACTCCGCAAGGCTACGGAGAAGGCAGAGCGGGCCCGAGTTAagatagagaagaggagaaaagagTGGGCTGAACTGTATGCCACAAAGCCCAATGAGAACTGTGAGGATCCGGAAGATGTGCGAGCCATCCGATTGGCTACGGAGAACATGGGTGACTTCAAGCTGAAGACTGCCAAAGACTTTACGGTCCCAGAACACCTGAGGATGAACGCAGAGAAGAAGAGAGCTCAGCTGGTCCACTTAGAGGAGAAGATCCATGAGAGGAAGACGCAGATGAACAGTCGCATAATGGCCCTAAGGGACACTAAGGTGAGCCTCGTGTCACGCCTGCGCTCCCAGGCCCAGCAGCTACAGGCTGTCCAGGAGCGCCTAGCGCCTCATTTCTGCAGCCCTGCCCCAACCCTGCCCTCCCTGCTGCCCGAGGAGACCCCTGAGACGAAGCTACGCTACACCCGCACCACCCTGCAGCGCTACGGGGCCCTGAGGGCTCAGAGggcctgtacTCGTGGCCAGGAACTAGAGGGGGGGCAGACTCTGCTggaacagctggaggcagagctAGAAAAACAGGAGGAGACACCCTGCCATACACCTGcagatatgagagagagggaggtggaggaatCTGGGGTGACCgagctggaggaggagatgagggaggtggaggagatcaGGCTGCTGTATGAAGAGGAATCCCTGCTGGAACAGatgTCGTCGTCAATGTGGCAGTTTGATGCGGAGCTGTGCCTGCTGCGTCACGAGAAGCTGTGTCTAGACATCCAGATGAAGCTGGCTGACCTGCGCCATGTCACCCTGTTCCAGGAGCTGCTGCTGCTCAAAGAGTTTGAGAAGAGAGAGAACTCCTTGCAGGAGAGACTCAATGCCTGCGTGGAAGAAGAGGAAGACCTCAggtctaagTTGGAGGAGTGTAAGCAGGCACTGGAGTTGAAGCGGAGGGACATCTCCAagctccaggagagagagagggccataGCTGCCACCTTCCAGGCCTCTCTAGGGGAGAACAACAAGTTTGCTGacttcctcaccagggtcttcaAGAAGAAGATCAAACGCGTCAAGAAGAAAGAAAAGGCTGGAGATGACGaggagcaggaggacagtGATGAAGATTCTGATGAAGAGTCTGActgggatgaggatgaggatgacaGTGGCTCAGAGAGCGGTGGTCCTCTGGATGACAGCGTCTGCCCCCCAAACTGTAACTCAGAGCTGTTTGAGAACACGGTGCAGCTCCGTGAGCGTCGTCTGGACCTTGAGGAGCTgctagtggaggagaggaagactgcAGACAACCTGAGGAAGGAGTGTGACTCCCTCGTCAAGAAGGAAAAAGTGGTTCATGGCAGTCTGAAAGCAGCAGAGGGAGACCTGGAGCTGTTcaacagagagaaacaacagaagCTCAATGAGCTGGATGTGGTGGTTCCCCTCAGACTGCACCAGATAGAGTTTGTGAGCAATGGGGTGGTACCGTGCAGCCTGGCCCCAGCACTGGTGCTGAACACAGTGGCATTGGGAGGACTACAGGAGAGGATTAAAGAACTGCAGGTGGAGAAGAGTGAACAGAGAGACCTCTACAGACAGGCCAGGCAGCAACACGTCCAGCTCATTCACGACCGCAAGGACATGGAGGCCAAGATACAGAgtctggaGGCGCGCTGTGAGCAGCTGATGCTGATGAAGTTTGGGAAGCTAGTGGACCTGGAAGCCTTACAGACTCTGTCTGGCAACAGAAACCTGGAGGAGATGAGACAGGATAGCAGAGTCCGAGAGGCCGCTTACACACAGGAGGTCAGACAGTGGGAGatgaaAGTGACAGAGGCCCGTCATGCGGTGACAGAGGTGACAAGGCATCACACCGAGCGTCTCCTCAGTATGAACAGCCTGCTGAGCCAGAAGAAAGAAATGGAGGACAAACTCAACACCAGGCAGAGCAGGATGggtacCCAGTTCCAGGGCCGTCGGCATGCTGAGGAGGACGAGAGGCAGAGGCTGTACCAGCTGGTCCAGAGTCAAGCTCAGGAGGCAAACGCCCTCCGCCAGGAGATCAACATCCTGTCCAGAAAGGGGGGTCACATCCTGCCCCCCAGCCAGGCCCCATTGCCCCCCCTGCCCGACGCCCCATCCCGCTCCACCCGTACCAACCCAGAGAGGCTCAACAGACACTTCAAACTGGGAGGGGGGCATCCATCCACCACCAGCCAGGGGTTGGAATAGAGCCTAAACACTCACATTGATAATACCCACACATATTATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216636 lncRNA upstream 24708 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA upstream 24708 81032042 ~ 81033476 (+) True LOC118942351
TU216603 lncRNA upstream 66330 80988887 ~ 80991854 (+) True LOC110497237
TU216557 lncRNA upstream 133462 80914300 ~ 80924722 (+) True G191167
TU216402 lncRNA upstream 335604 80721510 ~ 80722580 (+) True G191024
TU216836 lncRNA downstream 255655 81335078 ~ 81335608 (+) True G191402
TU216843 lncRNA downstream 263041 81342464 ~ 81342689 (+) True G191405
TU216844 lncRNA downstream 264205 81343628 ~ 81343850 (+) True G191406
TU217572 lncRNA downstream 457702 81537125 ~ 81537623 (+) True G192071
TU217583 lncRNA downstream 478298 81557721 ~ 81558024 (+) True G192082
XM_021573350.2 mRNA upstream 2756 81049506 ~ 81055428 (+) True LOC110497304
XR_005038304.1 mRNA upstream 24933 81031999 ~ 81033251 (+) False LOC118942351
XR_005038310.1 mRNA upstream 24933 81031999 ~ 81033251 (+) False LOC118942351
XR_005038316.1 mRNA upstream 24933 81031999 ~ 81033251 (+) False LOC118942351
LOC110502143 mRNA upstream 26308 81029341 ~ 81031876 (+) True LOC110502143
XM_021573376.2 mRNA downstream 4333 81083756 ~ 81086188 (+) False LOC110497320
XR_002469663.2 mRNA downstream 4333 81083756 ~ 81086188 (+) False LOC110497320
XM_021573388.2 mRNA downstream 4640 81084063 ~ 81086188 (+) False LOC110497320
XM_021573417.2 mRNA downstream 23880 81103303 ~ 81173090 (+) False csnk1g1
XM_021573421.2 mRNA downstream 23880 81103303 ~ 81173090 (+) False csnk1g1
TU216442 other upstream 291470 80765332 ~ 80766714 (+) False G191057
TU216443 other upstream 291470 80765732 ~ 80766714 (+) True G191057
TU216437 other upstream 301537 80755141 ~ 80756647 (+) True G191052
TU213267 other upstream 2478122 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 2551252 78484824 ~ 78506932 (+) True LOC110496993
TU216654 other downstream 4405 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other downstream 4405 81083828 ~ 81086180 (+) True LOC110497320
TU218731 other downstream 1286862 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 1321690 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 1338823 82418246 ~ 82422182 (+) True LOC110497686

Expression Profile