RNA id: XM_021573408.2


Basic Information

Item Value
RNA id XM_021573408.2
length 6910
RNA type mRNA
GC content 0.44
exon number 14
gene id csnk1g1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81103303 ~ 81173090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccttcCTTTCTAGTTTGGATCAACACTTCCGGAACACTTTCATATCAGTGGAGGCGAACTGAACAGGGCTCTGGGAGGCATAGCTTGACATAACCTTAGCCAAATTGACATCTCGATCTTGTTTCTGGCGTAATTGTCACTACACAAACGGAAAATAAATGACTAAATGCACCCAGGATCACATTGAAAGATACCTGTGAAAGCTCTTGCTTCCCACCCAAATGTCAAGGTCACAGTGACCGGGGCGGGCGGAGGCAGAGCCCGTTGCCCCGGCCCCTTTGCCCAGCTGCAGAGCAGCCCCTGTCAGGGAGCACATCCTCCCATTCCAGTCCTCTGGGTGGCACCTTGAGCCATGGAGCACTCAcgggagaaagagggtgagagaccTGCACGCAGCAACAAGGCAGGTCAGGGGCGCAGCGGGCACTCGCGCCCCTCGGGATCAGGCTCCTCCGGAGTGCTCATGGTGGGGCCCAACTTCCGTGTGGGCAAGAAGATCGGCTGTGGTAACTTTGGAGAGCTGAAGTTAGGTAAAAATCTCTACACCAATGAATATGTTGCAATAAAATTGGAACCAATCAAATCAAGGGCACCACAGCTGCATTTGGAGTACCGGTTTTACAAAACATTAGGCAGCACAGAGGGTCTTCCTCAGGTCTTCTACTTTGGGCCATGTGGGAAATACAATGCCATGGTTTTGGAGCTGCTGGGTCCCAGTCTAGAAGACCTCTTTGACCTCTGTGACAGGACCTTCTCTCTTAAGACCGTTTTGATGATGGCTATTCAGCTGCTCTCCCGGATGGAGTACGTCCACTCCAAGAACCTCATCTACCGAGACGTGAAGCCAGAGAACTTCCTCATCGGACGGCAGGGGCACAAGCAGGAGCACATCATCCACATAATCGACTTTGGCCTGGCCAAAGAGTACATCGACCCCGAGACCAAAAAACACATCCCCTACAGGGAACACAAGAGCCTCACAGGGACCGCCCGCTACATGTCTATTAACACCCACTTAGGAAAAGAGCAAAGTCGACGGGATGACCTGGAAGCCCTGGGCCACATGTTCATGTATTTCCTACGAGGGAGTCTACCGTGGCAAGGACTCAAGGCTGACACCCTGAAAGAGCGATACCAGAAGATTGGCGACACCAAGCGCAACACTCCCATTGAGGTCCTCTGTGAAAGCTTTCCAGAAGAGATGGCCACCTACCTGCGCTACGTGCGGCGATTGGACTTCTTTGAGAAGCCCGACTACGAGTATTTGAGGACTCTGTTCACCGAGCTGCTTGAGCGGAAAGGATACACCTTTGACTACACCTACGACTGGGATGGCAGACCGATTcCTACTCCAGTGGGGGCTGTCAACGTGGACTCGGGTGCGTCTGCCATCACGAGAGAAAGCAACGCTAACAGAGACAGGCCCTCTCAGCAACAACCCCTACGGAACCAGACGGCAGCATCAGACCGCAGAGGGGCATGGGATGCACAGCCCCACCGGCAGACAAACTCCTCCTACATGAGCAGCTCCCACCTGGCCGCAGACAGGCATGGGGGCTCTGTGCAGGTGGTCAGCTCCACCAATGGGGAACTGAATGCCGATGACCCAATGACGGCCCACTCCAACGCACCTATCGCAGCGCAGGCCGACGTGGAGGTGGTGGATGAGGCCAACTGCGTGAAAATGCTCAACCTGTGGTGTTGTTGCTTCTTCAAGCGAAAACGGAAGAAGAACACTCCACGGCAGAAATGATCTCCTGCTACCCTGTCCGGTGTCGCTGAGCGAGTTTAGTTTTAAGGAAACTAACGAAGGGATATTTCTGGGAGGGAGTTGGGAGAGAGACTTGTTATTACAAGAGAAATGGGATTCTTACTGACCTGGACCTACTGAATGGAACTACTATACACATGAAGACCTTGGCCACAAAgtcctttcttttctttccttCTTGGTGGATGAATGACTAAATTTGACTTTTGACCTTTCCTCTGAATACTGGAGGATGCCTGAGGACATCTCTTCATCTGCCCcagtttgttttttgtttttttctagtGGAGATCAAAAGTCAAGTCttcccctctccatttctcttttcGGGCGTGAGGAGACCAGTCTAGCAGTCTATAGACCTTTACCACCTTTCTTtcgtgtctctctcctctttctctctctccaaacccaCTCACCGCCACAGTAAAAGCCGGTCTTAAGCTGTCCCATTTGCTTTTTGTTCATACAAATTTATGTCTACATACGTAGGTGTGGATGTTTGTTTGAATGTGTGAATGTGCCCTAATGGCTAATTGGTTCATATGCCACGAAGCTCCTCCCACTAAGCCCTGTTTGACTGTCTTTTGAAAAAGGCATTATAGATGATGCTTCCTAGTCCTGAAGTAACCTTGCTTCAACCCTAGACACCTCCATGGTCCCTTGTAGATCTGCAAAGATGCCACAGGTTCTTTCAAATCTATCAAGAACGGTCTGCAGGTTGATTTGGGATTGGCATAAGTAGTCAAAGCAGAAAGAAATGGTAGAAAAGGAGGGAACACCAAAATAATCACTTTTCTAATGCATCCTTGCCAGAAAAAAACCTGATGAGTACCAATTCACCTCTCAACAATCACTAAATTTGCCTTCTGCCTCCATATTTGTGTTAAAAACAATTGTGCTAATTTCAATGATAGGCAAGAAAAATGTTAGACCGCAGCGAGTGACCAAAGGGATGTGTGTGGACAGAGGACCTATTATGTTACCAGATTTAGATTTAACTGAAAATTATTTGTATTCCAGATCCATGCACTGGTCATTATTTACCCACCCACTCCTTTTCAGCTTTTCAATTTCAGgccaacaaaaaaaatgtttggggGGAGAGAATCACCAATAGATCTGTTATGAGTTGCATTTCGCATTGCTTTTGGTAACATTGCCAGTACCTGTAAACTGGTTCCTGTTATCCACAAACACTTAACTTTGTGTCTGTGCGGATTTAGGAAAAGTTGCTTCCAActgctgatctaaggtcagttgtagattttttttttacctcccaATGTTTAAAGCTAGGATTGGGCTATCATGAACTGACACCAGGTGTACACTTTAGGGTGGCTTCTAcctccagtctgtctgtctgtgtactgaATCTGGGACAAGGAGAACAGACTTGGCTCTCCTATTGATTTAGATGCTACTGCTCCTCCTGCTGGCCTTACCATGTAATGCCTTAATCAAACCACCTCTCTTCAGAGCCTATCAGGATAGGCATCTGTTCACTGCAACAACACACCAGCCAATAAGAAGACATGTTGACAAGTCTGGTTCCTATAGAGCAGTGTTGCTCAACTGGATTCCTGGGGTACCTTATGGTGTTGCATATTTTTGTTCTAGCCCAGCCTGAACACCTGAATCAACTAATTGCAGGTTTAATGATTAGTTGAGTATTAtttttgaatcaggtgtgtttgctgGGCTAGAACAAAAAATGGAGCTGTGCTGTGGCGTCGACGCTCAAGACCTGGACTTAAGAAATGGAAGCTGTAGAGAGGGAGACTATACAGCTGCCTCAATGCCCCTTAGAGGTCAAAATTATTTAGCCTGTGGAAATGGTTGCGTTTTAGGAGATGACACTGTGGTCTCTcactttaaatacattttagtgcAGACAAGGTTGAGAAAGCAGAATTTGAAGATTTCAAATACAGGAACAGTTTTATGTGACTCGTGACAGGTCATCTAAGGTCATCAGAGTAAAAGGAAGTGAAGGACCTTTTTTTTATTCTTCAGATTTGCTTATTTGTGTTCCTCTGCAGTCAAAACATTTGAGGTTGTGAAATGCTACATTTTACAATAATATTCTACCCTTTTGGTAAACCTCAGTGTTTACTCCTGAGTGGTTATCTTGTCTGTTTTcaatttattttgttttgtgttgtcaATGTGAACTGAAAATGTATGATGTCctgtaatttgtatttttttaatcattGAATGATCTTGCTttttcatgggggggggggggtgtatttaaaCAGCGATTGAGTGCACTACTTATTTTGTACCTACTGTTGACTGCAGTTAGAATGCCAGCCTTGCTCTCTACCATCTAGATACTATCCACTGTTTCACTTGTGTATTATGGAAATGGTGGCAAGAACTCTGTGGCTTTGAGTCAAGGCTGGGGGAATTGTCAATTTCCTTATGCTTCTATTGAATAACTCCcttgtacacagacacacaggcttgtgtgatactgtatgatacGTTTTTATCTTTGGAGTCAGTTACCTAGCTGTCTTTTATAGGGATAGACAAACAGAAGCTATGTATATTTTTGAGTAAcaaagcagatttttttttttttgtactgtgTGCAAATGTCGTATTCTTCCTTGAAAGTGTATGTCTTGAGTAAGTATCTCTGCAGTTtaaattatttcaaatgtacTTGAATTGAAAGATGTGGGACGAGTCTTAGTCAAGTAGTGGAGTGTCAGGATTTACTCAAATGCCATTGTCTGACTAAATGATGTGCTTGTGAGTGATCTTAATTCATGGATTGGTCAGTTGATTCACCCACCTATCATTCAGACTTTTAGACATCGCTGCTGACCACACCAGGATAATTGTGAAGTGGGTAAAAGGCTTAggctgttgtcatgtggtgtcgctctcctcttgctctctccttttctctctccttcaccttgtTGTTTTTGTTGGCTTCTTCCCTTCCTTGAAGTACTTAGTGATATAACGTGACAGTTGAAAGAAATGGCTTTTCTAGTCATGTCCAATCAGTGATTACttgaaggaagagagaaaggactGTATTTATCCCAGCCTTTTAAACTTTCTATGACACTGGTGCAGCATGGAGGTGCTGACCCCAGGGTTTCTTGAGAGGACAGAGGATGTATTTTCTgctagttaccacagccatatTGTCATATttggctatatcgtaaaaatgcatgacactttttggtcttaatttaagattAGTGTTAGGCATAATATTATCATTGTGGTTCGAGGTAGGTTTAAAATTACATTTTTAAGAACATAAATCGTAGAAGTTGGGGTGTTTATGACTTCGTGGCTAGGGTAACTAGTGAAGACCAGAGGACTTTTACTGGCTTATTCACCGGAGTCCCACACGCCCCCTGATGGCAGTATATATTTGCCCATGCAGCCTTCTGATCCCACTGGGGGTAATTTTGACGCTGCACATTCCTTTTCCTCCATGACATGTTAACACAACCTCCTCCGATGGCAGGGTTTGTTTGAGATGTCACTCACTGTATCCGGATGCGCTGACTATGAATATGTATACCTCAGAGAAAAGCCATTACTGTCTCTAGCGCACACACTTTTTGTTCTCTCATCtgtctttgcccccccccccccctccagtgtCAGCTTCATGACCTCACCTTCCTCTGGTGCCAAGGGTGCTGAAATGTTAACATGTTGTAGACATGAGCTCTATGCTCTGCTCTTAAGGTGGTGCCATTTTAGACACTGGCATTTGGTGGGTTAGTTCTAACATTGCAAGTGCTTTTGGAGAAACCATTCAgaaatagatatatatatttttttgccatGTTATTGCTTACCTGCTGTCTTCCCAGGCCATGCTTGTGTAACAACCATACCAACTCAGAATTGGTATGGTTGCGTATTTCTGACATTACATAAAAGGTCTTATTTTGCTTTAGATCATTTACGTGACTAAGAATTCATGAGGCTTCTACTATAGTAATATTGCTTATGATTACAGATTATAATTTCTTTCATTAAGTATTCTTGACCTTCTTTTTTTGCTTGATCCCAACAACCAAAGTTATTGTTTTGGCATCCTTGTTTTCTTGTCATTGTACTTCCTTTTTATTAATGGAACCACTTACTTTAATACATACTTGAAATGTTTTGCCACAGTTTGTGCAACATGTACATATGTACAGGCACCTCTAAATGAACTAGATGCTACGGGGGGAGGCATGACTTTACCCTCTCCATCAGCAACTAGAAGACGACACTGAGTCAGATGGCTTTGACCAGTTGTATCCTCGTCATGCCTTCTGCATCTAGGGGTAGATTAATTCAACCGGAGGTTTTCTCATTGGCTTTAAGCACAACTATTATTGTACTGGTATGCTTTGTGTATTTAAAGAATACTATCTTGCTTGAATGAAACGGGTCCATCAGGGCCTTAACGACCATTTTCATCGTTGCTGGTTCCTTTTTCATTCTCACTGTCGTTCCAGACAATCTCTCCACTTCCTCAGTGTTGGAGAGACCATTTATCGATGGTTGCTTGCATTTGTCCACAGAAATGTGTAGGGCACGAGCTGCAAAGACTGCTCAAGTGAGGTAGACTTTTTCCGACATTACGTTCAGAGTTGcttaaactgtagacctccagtGGTTAGAGACAAGACTGCAATATTGTACTGATTATTTTCAATTGTAAATTATGTAAAGTTGATTATGTTCAAATGGGAGTCTATTTTCTTGATGCGTTTTTCTTTTCTCCCTCTTCAAAGCTGTCTCCTGTTCTGGTAATAGTTTCAAAGCTATGAATATGAGTCAAGTATTACAATTGTATTATGGATATTACTGTGTTGAAACATGAATGTTACTTCAAAATGTATTTGAATGCTTTAACCTGGTTAAGGGCTCCAATTGTGAAAACCCCcccttttccttttttttttacacagaaaGATACGAGGTCTCTACTCTTTCTGTCTTAAAATTCCTACCCCcctcgcccccagaaacctcaaGTGAAATGTGTCTTGGGAACTTTCCAAAATCATACTTTTTATTCCCTCCTAACTTAAAGGGAAAATCAAGTTTGCACCCTTTTTTATGTAAAATAAATCTCTCTTAACCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216636 lncRNA upstream 69828 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA upstream 69828 81032042 ~ 81033476 (+) True LOC118942351
TU216603 lncRNA upstream 111450 80988887 ~ 80991854 (+) True LOC110497237
TU216557 lncRNA upstream 178582 80914300 ~ 80924722 (+) True G191167
TU216402 lncRNA upstream 380724 80721510 ~ 80722580 (+) True G191024
TU216836 lncRNA downstream 161988 81335078 ~ 81335608 (+) True G191402
TU216843 lncRNA downstream 169374 81342464 ~ 81342689 (+) True G191405
TU216844 lncRNA downstream 170538 81343628 ~ 81343850 (+) True G191406
TU217572 lncRNA downstream 364035 81537125 ~ 81537623 (+) True G192071
TU217583 lncRNA downstream 384631 81557721 ~ 81558024 (+) True G192082
XM_021573376.2 mRNA upstream 17116 81083756 ~ 81086188 (+) False LOC110497320
XR_002469663.2 mRNA upstream 17116 81083756 ~ 81086188 (+) False LOC110497320
XM_021573388.2 mRNA upstream 17116 81084063 ~ 81086188 (+) False LOC110497320
XM_036956467.1 mRNA upstream 22802 81058184 ~ 81080502 (+) False LOC110497314
XM_036956468.1 mRNA upstream 23881 81058184 ~ 81079423 (+) False LOC110497314
XM_021573490.2 mRNA downstream 4693 81177783 ~ 81185724 (+) False LOC110497399
XM_036956470.1 mRNA downstream 4693 81177783 ~ 81185894 (+) True LOC110497399
XR_005039451.1 mRNA downstream 7428 81180518 ~ 81180642 (+) True LOC118944145
XR_005039450.1 mRNA downstream 9702 81182792 ~ 81182920 (+) True LOC118944144
XM_021573522.2 mRNA downstream 36567 81209657 ~ 81213316 (+) False LOC110497416
TU216654 other upstream 17124 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 17124 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 32429 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 34740 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 336590 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 1193195 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 1228023 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 1245156 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 1479543 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 1946237 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile